RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 ADAMTS5Q9UNA0 930 aa17.93■□□□□ 0.46
CLN3-236ENST00000568558 COL6A3P12111 3177 aa17.93■□□□□ 0.46
CLN3-236ENST00000568558 SAMD1Q6SPF0 538 aaPredicted RBP17.92■□□□□ 0.46
CLN3-236ENST00000568558 MAML3Q96JK9 1138 aa17.92■□□□□ 0.46
CLN3-236ENST00000568558 STRBPQ96SI9 672 aaKnown RBP17.92■□□□□ 0.46
CLN3-236ENST00000568558 FBXO28Q9NVF7 368 aa17.92■□□□□ 0.46
CLN3-236ENST00000568558 SEPT4O43236 478 aa17.91■□□□□ 0.46
CLN3-236ENST00000568558 SLC25A27O95847 323 aa17.91■□□□□ 0.46
CLN3-236ENST00000568558 FCER1AP12319 257 aa17.91■□□□□ 0.46
CLN3-236ENST00000568558 ATN1P54259 1190 aaPredicted RBP17.91■□□□□ 0.46
CLN3-236ENST00000568558 MDM2Q00987 491 aaPredicted RBP17.91■□□□□ 0.46
CLN3-236ENST00000568558 SBK1Q52WX2 424 aa17.91■□□□□ 0.46
CLN3-236ENST00000568558 GJC2Q5T442 439 aaPredicted RBP17.91■□□□□ 0.46
CLN3-236ENST00000568558 KBTBD3Q8NAB2 608 aa17.91■□□□□ 0.46
CLN3-236ENST00000568558 ARRDC4Q8NCT1 418 aa17.91■□□□□ 0.46
CLN3-236ENST00000568558 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.91■□□□□ 0.46
CLN3-236ENST00000568558 GOPCQ9HD26 462 aa17.91■□□□□ 0.46
CLN3-236ENST00000568558 ROBO3Q96MS0 1386 aa17.91■□□□□ 0.46
CLN3-236ENST00000568558 ANO1Q5XXA6 986 aa17.9■□□□□ 0.46
CLN3-236ENST00000568558 RIOX2Q8IUF8 465 aa17.9■□□□□ 0.46
CLN3-236ENST00000568558 PPP1R9AQ9ULJ8 1098 aa17.9■□□□□ 0.46
CLN3-236ENST00000568558 GSG1L2A8MUP6 293 aa17.89■□□□□ 0.45
CLN3-236ENST00000568558 RASA1P20936 1047 aa17.89■□□□□ 0.45
CLN3-236ENST00000568558 RTP1P59025 263 aa17.89■□□□□ 0.45
CLN3-236ENST00000568558 PRAMEF19Q5SWL8 479 aa17.89■□□□□ 0.45
CLN3-236ENST00000568558 FAM83BQ5T0W9 1011 aa17.89■□□□□ 0.45
CLN3-236ENST00000568558 GIMAP6Q6P9H5 292 aa17.89■□□□□ 0.45
CLN3-236ENST00000568558 APPBP2Q92624 585 aa17.89■□□□□ 0.45
CLN3-236ENST00000568558 OSBP2Q969R2 916 aa17.89■□□□□ 0.45
CLN3-236ENST00000568558 MMP19Q99542 508 aa17.89■□□□□ 0.45
CLN3-236ENST00000568558 DCTPP1Q9H773 170 aa17.89■□□□□ 0.45
CLN3-236ENST00000568558 ZNF214Q9UL59 606 aaPredicted RBP17.89■□□□□ 0.45
CLN3-236ENST00000568558 KBTBD13C9JR72 458 aa17.88■□□□□ 0.45
CLN3-236ENST00000568558 VWA5AO00534 786 aa17.88■□□□□ 0.45
CLN3-236ENST00000568558 RAD21O60216 631 aa17.88■□□□□ 0.45
CLN3-236ENST00000568558 TSHZ3Q63HK5 1081 aa17.88■□□□□ 0.45
CLN3-236ENST00000568558 REPS2Q8NFH8 660 aa17.88■□□□□ 0.45
CLN3-236ENST00000568558 GPATCH3Q96I76 525 aa17.88■□□□□ 0.45
CLN3-236ENST00000568558 MCM3APO60318 1980 aa17.88■□□□□ 0.45
CLN3-236ENST00000568558 RNF113AO15541 343 aaKnown RBP17.87■□□□□ 0.45
CLN3-236ENST00000568558 PGK2P07205 417 aa17.87■□□□□ 0.45
CLN3-236ENST00000568558 STAT3P40763 770 aa17.87■□□□□ 0.45
CLN3-236ENST00000568558 SLC39A5Q6ZMH5 540 aa17.87■□□□□ 0.45
CLN3-236ENST00000568558 Q7L0L9 218 aa17.87■□□□□ 0.45
CLN3-236ENST00000568558 STK11IPQ8N1F8 1099 aa17.87■□□□□ 0.45
CLN3-236ENST00000568558 DEFB123Q8N688 67 aa17.87■□□□□ 0.45
CLN3-236ENST00000568558 LBHD1Q9BQE6 289 aaPredicted RBP17.87■□□□□ 0.45
CLN3-236ENST00000568558 MKNK2Q9HBH9 465 aa17.87■□□□□ 0.45
CLN3-236ENST00000568558 EPB41L4AQ9HCS5 686 aaPredicted RBP17.87■□□□□ 0.45
CLN3-236ENST00000568558 NRBP1Q9UHY1 535 aa17.87■□□□□ 0.45
CLN3-236ENST00000568558 MINDY4BA8MYZ0 360 aa17.86■□□□□ 0.45
CLN3-236ENST00000568558 GPAA1O43292 621 aa17.86■□□□□ 0.45
CLN3-236ENST00000568558 ZFYP08048 801 aaPredicted RBP17.86■□□□□ 0.45
CLN3-236ENST00000568558 COPB2P35606 906 aa17.86■□□□□ 0.45
CLN3-236ENST00000568558 KCTD2Q14681 263 aa17.86■□□□□ 0.45
CLN3-236ENST00000568558 SNX17Q15036 470 aa17.86■□□□□ 0.45
CLN3-236ENST00000568558 LRRC41Q15345 812 aa17.86■□□□□ 0.45
CLN3-236ENST00000568558 ZNF792Q3KQV3 632 aa17.86■□□□□ 0.45
CLN3-236ENST00000568558 FAM47AQ5JRC9 791 aa17.86■□□□□ 0.45
CLN3-236ENST00000568558 NUP88Q99567 741 aaPredicted RBP17.86■□□□□ 0.45
CLN3-236ENST00000568558 TINF2Q9BSI4 451 aa17.86■□□□□ 0.45
CLN3-236ENST00000568558 NYAP2Q9P242 653 aa17.86■□□□□ 0.45
CLN3-236ENST00000568558 PRKAG2Q9UGJ0 569 aa17.86■□□□□ 0.45
CLN3-236ENST00000568558 ATP11BQ9Y2G3 1177 aa17.86■□□□□ 0.45
CLN3-236ENST00000568558 DIS3Q9Y2L1 958 aaKnown RBP17.86■□□□□ 0.45
CLN3-236ENST00000568558 MYCNP04198 464 aaPredicted RBP17.85■□□□□ 0.45
CLN3-236ENST00000568558 SLF1Q9BQI6 1058 aa17.85■□□□□ 0.45
CLN3-236ENST00000568558 IGKV6D-41A0A0C4DH26 115 aa17.84■□□□□ 0.45
CLN3-236ENST00000568558 F5H6K3 240 aa17.84■□□□□ 0.45
CLN3-236ENST00000568558 M0R2C6 588 aa17.84■□□□□ 0.45
CLN3-236ENST00000568558 NDUFB10O96000 172 aa17.84■□□□□ 0.45
CLN3-236ENST00000568558 GNAT2P19087 354 aa17.84■□□□□ 0.45
CLN3-236ENST00000568558 ADCYAP1R1P41586 468 aa17.84■□□□□ 0.45
CLN3-236ENST00000568558 TDO2P48775 406 aa17.84■□□□□ 0.45
CLN3-236ENST00000568558 KLRC3Q07444 240 aa17.84■□□□□ 0.45
CLN3-236ENST00000568558 SLC17A8Q8NDX2 589 aa17.84■□□□□ 0.45
CLN3-236ENST00000568558 MTMR10Q9NXD2 777 aa17.84■□□□□ 0.45
CLN3-236ENST00000568558 RARBP10826 455 aa17.83■□□□□ 0.44
CLN3-236ENST00000568558 TRIM60Q495X7 471 aa17.83■□□□□ 0.44
CLN3-236ENST00000568558 C1orf53Q5VUE5 145 aa17.83■□□□□ 0.44
CLN3-236ENST00000568558 FERMT2Q96AC1 680 aa17.83■□□□□ 0.44
CLN3-236ENST00000568558 TEX13BQ9BXU2 312 aa17.83■□□□□ 0.44
CLN3-236ENST00000568558 XPNPEP3Q9NQH7 507 aa17.83■□□□□ 0.44
CLN3-236ENST00000568558 LAMA2P24043 3122 aaKnown RBP17.83■□□□□ 0.44
CLN3-236ENST00000568558 PLIN4Q96Q06 1357 aa17.82■□□□□ 0.44
CLN3-236ENST00000568558 TTC41PQ6P2S7 1318 aa17.82■□□□□ 0.44
CLN3-236ENST00000568558 PRDM1O75626 825 aa17.82■□□□□ 0.44
CLN3-236ENST00000568558 ZNF865P0CJ78 1059 aaPredicted RBP17.82■□□□□ 0.44
CLN3-236ENST00000568558 TAL1P17542 331 aaPredicted RBP17.82■□□□□ 0.44
CLN3-236ENST00000568558 SNRNP48Q6IEG0 339 aaKnown RBP17.82■□□□□ 0.44
CLN3-236ENST00000568558 IFNL3Q8IZI9 196 aa17.82■□□□□ 0.44
CLN3-236ENST00000568558 PRPF38AQ8NAV1 312 aaKnown RBP17.82■□□□□ 0.44
CLN3-236ENST00000568558 ZNF287Q9HBT7 754 aa17.82■□□□□ 0.44
CLN3-236ENST00000568558 PRDM5Q9NQX1 630 aaPredicted RBP17.82■□□□□ 0.44
CLN3-236ENST00000568558 PDLIM7Q9NR12 457 aa17.82■□□□□ 0.44
CLN3-236ENST00000568558 CLIP2Q9UDT6 1046 aa17.82■□□□□ 0.44
CLN3-236ENST00000568558 PHF24Q9UPV7 400 aa17.82■□□□□ 0.44
CLN3-236ENST00000568558 STXBP5LQ9Y2K9 1186 aa17.82■□□□□ 0.44
CLN3-236ENST00000568558 RIPK3Q9Y572 518 aa17.82■□□□□ 0.44
CLN3-236ENST00000568558 PATL2C9JE40 543 aaKnown RBP17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms