RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 SNX14Q9Y5W7 946 aa23.01■■□□□ 1.27
CLN3-225ENST00000566824 DOCK3Q8IZD9 2030 aa23■■□□□ 1.27
CLN3-225ENST00000566824 Q3C1V9 767 aa23■■□□□ 1.27
CLN3-225ENST00000566824 TSGA10IPQ3SY00 556 aa23■■□□□ 1.27
CLN3-225ENST00000566824 COL13A1Q5TAT6 717 aaPredicted RBP23■■□□□ 1.27
CLN3-225ENST00000566824 IQCA1Q86XH1 822 aa23■■□□□ 1.27
CLN3-225ENST00000566824 DGKHQ86XP1 1220 aa23■■□□□ 1.27
CLN3-225ENST00000566824 ATG4CQ96DT6 458 aa23■■□□□ 1.27
CLN3-225ENST00000566824 TTC14Q96N46 770 aa23■■□□□ 1.27
CLN3-225ENST00000566824 BTBD7Q9P203 1132 aa23■■□□□ 1.27
CLN3-225ENST00000566824 FLOT1O75955 427 aa22.99■■□□□ 1.27
CLN3-225ENST00000566824 DSG3P32926 999 aa22.99■■□□□ 1.27
CLN3-225ENST00000566824 NT5C2P49902 561 aa22.99■■□□□ 1.27
CLN3-225ENST00000566824 COG2Q14746 738 aa22.99■■□□□ 1.27
CLN3-225ENST00000566824 PPP4R3BQ5MIZ7 849 aa22.99■■□□□ 1.27
CLN3-225ENST00000566824 RNF20Q5VTR2 975 aa22.99■■□□□ 1.27
CLN3-225ENST00000566824 GMCL1Q96IK5 515 aa22.99■■□□□ 1.27
CLN3-225ENST00000566824 UBAC1Q9BSL1 405 aa22.99■■□□□ 1.27
CLN3-225ENST00000566824 PAGR1Q9BTK6 254 aa22.99■■□□□ 1.27
CLN3-225ENST00000566824 PRC1O43663 620 aa22.98■■□□□ 1.27
CLN3-225ENST00000566824 BMP3P12645 472 aa22.98■■□□□ 1.27
CLN3-225ENST00000566824 CPA1P15085 419 aa22.98■■□□□ 1.27
CLN3-225ENST00000566824 GCLCP48506 637 aaPredicted RBP22.98■■□□□ 1.27
CLN3-225ENST00000566824 KCTD1Q719H9 257 aa22.98■■□□□ 1.27
CLN3-225ENST00000566824 IGDCC4Q8TDY8 1250 aa22.98■■□□□ 1.27
CLN3-225ENST00000566824 LRRC2Q9BYS8 371 aa22.98■■□□□ 1.27
CLN3-225ENST00000566824 IFIT3O14879 490 aaKnown RBP22.97■■□□□ 1.27
CLN3-225ENST00000566824 LACTBP83111 547 aaPredicted RBP22.97■■□□□ 1.27
CLN3-225ENST00000566824 TTBK2Q6IQ55 1244 aa22.97■■□□□ 1.27
CLN3-225ENST00000566824 TCEANC2Q96MN5 208 aa22.97■■□□□ 1.27
CLN3-225ENST00000566824 MORF4L1Q9UBU8 362 aa22.97■■□□□ 1.27
CLN3-225ENST00000566824 FRMPD2Q68DX3 1309 aaPredicted RBP22.96■■□□□ 1.27
CLN3-225ENST00000566824 SLC1A4P43007 532 aa22.96■■□□□ 1.27
CLN3-225ENST00000566824 LBX2Q6XYB7 198 aa22.96■■□□□ 1.27
CLN3-225ENST00000566824 PNMA1Q8ND90 353 aa22.96■■□□□ 1.27
CLN3-225ENST00000566824 TRIM47Q96LD4 638 aa22.96■■□□□ 1.27
CLN3-225ENST00000566824 NEK1Q96PY6 1258 aa22.96■■□□□ 1.27
CLN3-225ENST00000566824 PPP1R9AQ9ULJ8 1098 aa22.96■■□□□ 1.27
CLN3-225ENST00000566824 TMEM232C9JQI7 657 aa22.95■■□□□ 1.26
CLN3-225ENST00000566824 PDHBP11177 359 aa22.95■■□□□ 1.26
CLN3-225ENST00000566824 FAM110CQ1W6H9 321 aa22.95■■□□□ 1.26
CLN3-225ENST00000566824 CCDC178Q5BJE1 867 aa22.95■■□□□ 1.26
CLN3-225ENST00000566824 TMEM67Q5HYA8 995 aa22.95■■□□□ 1.26
CLN3-225ENST00000566824 IFIT1BQ5T764 474 aaKnown RBP22.95■■□□□ 1.26
CLN3-225ENST00000566824 KAT14Q9H8E8 782 aa22.95■■□□□ 1.26
CLN3-225ENST00000566824 GPCPD1Q9NPB8 672 aa22.95■■□□□ 1.26
CLN3-225ENST00000566824 HOXC10Q9NYD6 342 aa22.95■■□□□ 1.26
CLN3-225ENST00000566824 ISY1Q9ULR0 285 aaKnown RBP22.95■■□□□ 1.26
CLN3-225ENST00000566824 ADAMTS5Q9UNA0 930 aa22.95■■□□□ 1.26
CLN3-225ENST00000566824 SNHG28P0DPA3 235 aa22.94■■□□□ 1.26
CLN3-225ENST00000566824 ZKSCAN1P17029 563 aaPredicted RBP22.94■■□□□ 1.26
CLN3-225ENST00000566824 MCM5P33992 734 aa22.94■■□□□ 1.26
CLN3-225ENST00000566824 ERVK-9P63128 1117 aa22.94■■□□□ 1.26
CLN3-225ENST00000566824 ERVK-24P63145 666 aa22.94■■□□□ 1.26
CLN3-225ENST00000566824 EXOSC10Q01780 885 aaKnown RBP22.94■■□□□ 1.26
CLN3-225ENST00000566824 CCDC96Q2M329 555 aa22.94■■□□□ 1.26
CLN3-225ENST00000566824 REPS2Q8NFH8 660 aa22.94■■□□□ 1.26
CLN3-225ENST00000566824 DCAF4Q8WV16 495 aa22.94■■□□□ 1.26
CLN3-225ENST00000566824 ERO1AQ96HE7 468 aa22.94■■□□□ 1.26
CLN3-225ENST00000566824 SLF1Q9BQI6 1058 aa22.94■■□□□ 1.26
CLN3-225ENST00000566824 LY9Q9HBG7 655 aa22.94■■□□□ 1.26
CLN3-225ENST00000566824 RABGAP1Q9Y3P9 1069 aa22.94■■□□□ 1.26
CLN3-225ENST00000566824 PLXNB2O15031 1838 aa22.94■■□□□ 1.26
CLN3-225ENST00000566824 SMCHD1A6NHR9 2005 aa22.93■■□□□ 1.26
CLN3-225ENST00000566824 SH2B2O14492 632 aaPredicted RBP22.93■■□□□ 1.26
CLN3-225ENST00000566824 EPB41L2O43491 1005 aaKnown RBP22.93■■□□□ 1.26
CLN3-225ENST00000566824 GOLGA8HP0CJ92 632 aa22.93■■□□□ 1.26
CLN3-225ENST00000566824 SLC16A2P36021 539 aa22.93■■□□□ 1.26
CLN3-225ENST00000566824 PSMC4P43686 418 aa22.93■■□□□ 1.26
CLN3-225ENST00000566824 SNAP25P60880 206 aa22.93■■□□□ 1.26
CLN3-225ENST00000566824 WTAPQ15007 396 aa22.93■■□□□ 1.26
CLN3-225ENST00000566824 OTOP1Q7RTM1 612 aa22.93■■□□□ 1.26
CLN3-225ENST00000566824 GPRC5AQ8NFJ5 357 aa22.93■■□□□ 1.26
CLN3-225ENST00000566824 KIFC2Q96AC6 838 aa22.93■■□□□ 1.26
CLN3-225ENST00000566824 JAKMIP1Q96N16 626 aaKnown RBP22.93■■□□□ 1.26
CLN3-225ENST00000566824 PORCNQ9H237 461 aa22.93■■□□□ 1.26
CLN3-225ENST00000566824 CPVLQ9H3G5 476 aa22.93■■□□□ 1.26
CLN3-225ENST00000566824 FEM1BQ9UK73 627 aa22.93■■□□□ 1.26
CLN3-225ENST00000566824 MYPNQ86TC9 1320 aa22.93■■□□□ 1.26
CLN3-225ENST00000566824 VWA5AO00534 786 aa22.92■■□□□ 1.26
CLN3-225ENST00000566824 ZNF543Q08ER8 600 aa22.92■■□□□ 1.26
CLN3-225ENST00000566824 TMEM132BQ14DG7 1078 aa22.92■■□□□ 1.26
CLN3-225ENST00000566824 KRT32Q14532 448 aa22.91■■□□□ 1.26
CLN3-225ENST00000566824 GTF3C2Q8WUA4 911 aaPredicted RBP22.91■■□□□ 1.26
CLN3-225ENST00000566824 EFCC1Q9HA90 598 aa22.91■■□□□ 1.26
CLN3-225ENST00000566824 TRIM17Q9Y577 477 aa22.91■■□□□ 1.26
CLN3-225ENST00000566824 DHX32Q7L7V1 743 aaKnown RBP22.9■■□□□ 1.26
CLN3-225ENST00000566824 CTU1Q7Z7A3 348 aaKnown RBP22.9■■□□□ 1.26
CLN3-225ENST00000566824 PRPF38AQ8NAV1 312 aaKnown RBP22.9■■□□□ 1.26
CLN3-225ENST00000566824 PRR12Q9ULL5 1215 aa22.9■■□□□ 1.26
CLN3-225ENST00000566824 ERICH2A1L162 156 aa22.89■■□□□ 1.26
CLN3-225ENST00000566824 FMNL1O95466 1100 aaPredicted RBP22.89■■□□□ 1.26
CLN3-225ENST00000566824 STAT2P52630 851 aa22.89■■□□□ 1.26
CLN3-225ENST00000566824 IKQ13123 557 aaPredicted RBP22.89■■□□□ 1.26
CLN3-225ENST00000566824 SART3Q15020 963 aaKnown RBP22.89■■□□□ 1.26
CLN3-225ENST00000566824 STAG2Q8N3U4 1231 aa22.89■■□□□ 1.26
CLN3-225ENST00000566824 TMEM87BQ96K49 555 aa22.89■■□□□ 1.26
CLN3-225ENST00000566824 MYL10Q9BUA6 226 aa22.89■■□□□ 1.26
CLN3-225ENST00000566824 MOV10L1Q9BXT6 1211 aaKnown RBP22.89■■□□□ 1.26
CLN3-225ENST00000566824 UBA5Q9GZZ9 404 aa22.89■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms