RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 CYP2C19P33261 490 aa17.81■□□□□ 0.44
CLN3-222ENST00000566083 RIOX2Q8IUF8 465 aa17.81■□□□□ 0.44
CLN3-222ENST00000566083 CLEC10AQ8IUN9 316 aa17.81■□□□□ 0.44
CLN3-222ENST00000566083 GDF15Q99988 308 aa17.81■□□□□ 0.44
CLN3-222ENST00000566083 STAP2Q9UGK3 403 aa17.81■□□□□ 0.44
CLN3-222ENST00000566083 PPP1R9AQ9ULJ8 1098 aa17.81■□□□□ 0.44
CLN3-222ENST00000566083 PFASO15067 1338 aa17.8■□□□□ 0.44
CLN3-222ENST00000566083 RAD21O60216 631 aa17.8■□□□□ 0.44
CLN3-222ENST00000566083 RASA1P20936 1047 aa17.8■□□□□ 0.44
CLN3-222ENST00000566083 RLFQ13129 1914 aa17.8■□□□□ 0.44
CLN3-222ENST00000566083 PPP4R3BQ5MIZ7 849 aa17.8■□□□□ 0.44
CLN3-222ENST00000566083 DIS3Q9Y2L1 958 aaKnown RBP17.8■□□□□ 0.44
CLN3-222ENST00000566083 RANBP2P49792 3224 aaKnown RBP17.79■□□□□ 0.44
CLN3-222ENST00000566083 A0A0G2JMZ2 1700 aa17.79■□□□□ 0.44
CLN3-222ENST00000566083 VWA5AO00534 786 aa17.79■□□□□ 0.44
CLN3-222ENST00000566083 STAT3P40763 770 aa17.79■□□□□ 0.44
CLN3-222ENST00000566083 PDE4BQ07343 736 aa17.79■□□□□ 0.44
CLN3-222ENST00000566083 KCTD2Q14681 263 aa17.79■□□□□ 0.44
CLN3-222ENST00000566083 TMEM132BQ14DG7 1078 aa17.79■□□□□ 0.44
CLN3-222ENST00000566083 PCDHB15Q9Y5E8 787 aa17.79■□□□□ 0.44
CLN3-222ENST00000566083 ALPK3Q96L96 1907 aa17.78■□□□□ 0.44
CLN3-222ENST00000566083 SMIM22K7EJ46 135 aa17.78■□□□□ 0.44
CLN3-222ENST00000566083 SEPT4O43236 478 aa17.78■□□□□ 0.44
CLN3-222ENST00000566083 MX1P20591 662 aa17.78■□□□□ 0.44
CLN3-222ENST00000566083 SAMD1Q6SPF0 538 aaPredicted RBP17.78■□□□□ 0.44
CLN3-222ENST00000566083 TICAM2Q86XR7 235 aa17.78■□□□□ 0.44
CLN3-222ENST00000566083 IFNL3Q8IZI9 196 aa17.78■□□□□ 0.44
CLN3-222ENST00000566083 PRPF38AQ8NAV1 312 aaKnown RBP17.78■□□□□ 0.44
CLN3-222ENST00000566083 MMP19Q99542 508 aa17.78■□□□□ 0.44
CLN3-222ENST00000566083 SLF1Q9BQI6 1058 aa17.78■□□□□ 0.44
CLN3-222ENST00000566083 FSD1Q9BTV5 496 aa17.78■□□□□ 0.44
CLN3-222ENST00000566083 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.78■□□□□ 0.44
CLN3-222ENST00000566083 ZMYND8Q9ULU4 1186 aaPredicted RBP17.78■□□□□ 0.44
CLN3-222ENST00000566083 F5H6K3 240 aa17.77■□□□□ 0.44
CLN3-222ENST00000566083 COBLO75128 1261 aa17.77■□□□□ 0.44
CLN3-222ENST00000566083 KLRC3Q07444 240 aa17.77■□□□□ 0.44
CLN3-222ENST00000566083 AAMPQ13685 434 aa17.77■□□□□ 0.44
CLN3-222ENST00000566083 FAM83BQ5T0W9 1011 aa17.77■□□□□ 0.44
CLN3-222ENST00000566083 TSHZ3Q63HK5 1081 aa17.77■□□□□ 0.44
CLN3-222ENST00000566083 GPR153Q6NV75 609 aa17.77■□□□□ 0.44
CLN3-222ENST00000566083 PI4K2BQ8TCG2 481 aa17.77■□□□□ 0.44
CLN3-222ENST00000566083 MKL1Q969V6 931 aa17.77■□□□□ 0.44
CLN3-222ENST00000566083 MAML3Q96JK9 1138 aa17.77■□□□□ 0.44
CLN3-222ENST00000566083 SENP6Q9GZR1 1112 aaPredicted RBP17.77■□□□□ 0.44
CLN3-222ENST00000566083 CTDP1Q9Y5B0 961 aaPredicted RBP17.77■□□□□ 0.44
CLN3-222ENST00000566083 KBTBD13C9JR72 458 aa17.76■□□□□ 0.43
CLN3-222ENST00000566083 TTLL1O95922 423 aa17.76■□□□□ 0.43
CLN3-222ENST00000566083 RRP1P56182 461 aaKnown RBP17.76■□□□□ 0.43
CLN3-222ENST00000566083 MSL3Q8N5Y2 521 aaKnown RBP17.76■□□□□ 0.43
CLN3-222ENST00000566083 TEX13BQ9BXU2 312 aa17.76■□□□□ 0.43
CLN3-222ENST00000566083 NAPBQ9H115 298 aa17.76■□□□□ 0.43
CLN3-222ENST00000566083 FBXO28Q9NVF7 368 aa17.76■□□□□ 0.43
CLN3-222ENST00000566083 M0R2C6 588 aa17.75■□□□□ 0.43
CLN3-222ENST00000566083 ATP2A1O14983 1001 aa17.75■□□□□ 0.43
CLN3-222ENST00000566083 FDX1P10109 184 aa17.75■□□□□ 0.43
CLN3-222ENST00000566083 LRRC26Q2I0M4 334 aa17.75■□□□□ 0.43
CLN3-222ENST00000566083 ZMYM1Q5SVZ6 1142 aa17.75■□□□□ 0.43
CLN3-222ENST00000566083 TRPV1Q8NER1 839 aa17.75■□□□□ 0.43
CLN3-222ENST00000566083 EPB41L4AQ9HCS5 686 aaPredicted RBP17.75■□□□□ 0.43
CLN3-222ENST00000566083 MTMR4Q9NYA4 1195 aa17.75■□□□□ 0.43
CLN3-222ENST00000566083 CLIP2Q9UDT6 1046 aa17.75■□□□□ 0.43
CLN3-222ENST00000566083 PRKAG2Q9UGJ0 569 aa17.75■□□□□ 0.43
CLN3-222ENST00000566083 ZNF214Q9UL59 606 aaPredicted RBP17.75■□□□□ 0.43
CLN3-222ENST00000566083 IGKV6D-41A0A0C4DH26 115 aa17.74■□□□□ 0.43
CLN3-222ENST00000566083 ZBED4O75132 1171 aa17.74■□□□□ 0.43
CLN3-222ENST00000566083 NDUFB10O96000 172 aa17.74■□□□□ 0.43
CLN3-222ENST00000566083 TSPY3P0CV98 308 aa17.74■□□□□ 0.43
CLN3-222ENST00000566083 TSPY8P0CW00 308 aa17.74■□□□□ 0.43
CLN3-222ENST00000566083 SYN1P17600 705 aa17.74■□□□□ 0.43
CLN3-222ENST00000566083 MAGEA10P43363 369 aaPredicted RBP17.74■□□□□ 0.43
CLN3-222ENST00000566083 TDHQ8IZJ6 230 aa17.74■□□□□ 0.43
CLN3-222ENST00000566083 NEDD1Q8NHV4 660 aa17.74■□□□□ 0.43
CLN3-222ENST00000566083 UBE2OQ9C0C9 1292 aaKnown RBP17.74■□□□□ 0.43
CLN3-222ENST00000566083 FEM1BQ9UK73 627 aa17.74■□□□□ 0.43
CLN3-222ENST00000566083 GREB1LQ9C091 1923 aaPredicted RBP17.74■□□□□ 0.43
CLN3-222ENST00000566083 PARP14Q460N5 1801 aa17.73■□□□□ 0.43
CLN3-222ENST00000566083 LRIT3Q3SXY7 679 aa17.73■□□□□ 0.43
CLN3-222ENST00000566083 STK11IPQ8N1F8 1099 aa17.73■□□□□ 0.43
CLN3-222ENST00000566083 GMCL1P1Q8NEA9 526 aa17.73■□□□□ 0.43
CLN3-222ENST00000566083 REPS2Q8NFH8 660 aa17.73■□□□□ 0.43
CLN3-222ENST00000566083 EVI5LQ96CN4 794 aa17.73■□□□□ 0.43
CLN3-222ENST00000566083 LBHD1Q9BQE6 289 aaPredicted RBP17.73■□□□□ 0.43
CLN3-222ENST00000566083 TINF2Q9BSI4 451 aa17.73■□□□□ 0.43
CLN3-222ENST00000566083 FBXO40Q9UH90 709 aa17.73■□□□□ 0.43
CLN3-222ENST00000566083 CNPY2Q9Y2B0 182 aa17.73■□□□□ 0.43
CLN3-222ENST00000566083 ZNFX1Q9P2E3 1918 aaKnown RBP17.73■□□□□ 0.43
CLN3-222ENST00000566083 PLIN4Q96Q06 1357 aa17.73■□□□□ 0.43
CLN3-222ENST00000566083 RARBP10826 455 aa17.72■□□□□ 0.43
CLN3-222ENST00000566083 OAZ1P54368 228 aa17.72■□□□□ 0.43
CLN3-222ENST00000566083 PPARAQ07869 468 aa17.72■□□□□ 0.43
CLN3-222ENST00000566083 HDAC1Q13547 482 aaPredicted RBP17.72■□□□□ 0.43
CLN3-222ENST00000566083 ZNF792Q3KQV3 632 aa17.72■□□□□ 0.43
CLN3-222ENST00000566083 ANKRD45Q5TZF3 282 aa17.72■□□□□ 0.43
CLN3-222ENST00000566083 DDX11Q96FC9 970 aa17.72■□□□□ 0.43
CLN3-222ENST00000566083 CEP95Q96GE4 821 aa17.72■□□□□ 0.43
CLN3-222ENST00000566083 PRDM1O75626 825 aa17.72■□□□□ 0.43
CLN3-222ENST00000566083 SNRNP48Q6IEG0 339 aaKnown RBP17.72■□□□□ 0.43
CLN3-222ENST00000566083 FRMPD3Q5JV73 1810 aa17.72■□□□□ 0.43
CLN3-222ENST00000566083 PGK2P07205 417 aa17.71■□□□□ 0.43
CLN3-222ENST00000566083 GJC2Q5T442 439 aaPredicted RBP17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms