RNA–Protein interactions for RNA: ENST00000565023.1

VPS9D1-204, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 5

Gene VPS9D1, Length 775 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-204ENST00000565023 PTPREP23469 700 aa16.2■□□□□ 0.18
VPS9D1-204ENST00000565023 FXR1P51114 621 aaKnown RBP eCLIP16.2■□□□□ 0.18
VPS9D1-204ENST00000565023 TFAP4Q01664 338 aa16.2■□□□□ 0.18
VPS9D1-204ENST00000565023 MAP2K5Q13163 448 aa16.2■□□□□ 0.18
VPS9D1-204ENST00000565023 MCMDC2Q4G0Z9 681 aa16.2■□□□□ 0.18
VPS9D1-204ENST00000565023 MORN1Q5T089 497 aa16.2■□□□□ 0.18
VPS9D1-204ENST00000565023 ZNF589Q86UQ0 364 aaPredicted RBP16.2■□□□□ 0.18
VPS9D1-204ENST00000565023 NCAPG2Q86XI2 1143 aa16.2■□□□□ 0.18
VPS9D1-204ENST00000565023 SPATC1LQ9H0A9 340 aa16.2■□□□□ 0.18
VPS9D1-204ENST00000565023 HMX1Q9NP08 348 aaPredicted RBP16.2■□□□□ 0.18
VPS9D1-204ENST00000565023 TOMM22Q9NS69 142 aa16.2■□□□□ 0.18
VPS9D1-204ENST00000565023 ZNFX1Q9P2E3 1918 aaKnown RBP16.19■□□□□ 0.18
VPS9D1-204ENST00000565023 F5H6K3 240 aa16.19■□□□□ 0.18
VPS9D1-204ENST00000565023 PRKAR2AP13861 404 aaKnown RBP16.19■□□□□ 0.18
VPS9D1-204ENST00000565023 ERCC3P19447 782 aa16.19■□□□□ 0.18
VPS9D1-204ENST00000565023 SLC4A3P48751 1232 aa16.19■□□□□ 0.18
VPS9D1-204ENST00000565023 KLRC3Q07444 240 aa16.19■□□□□ 0.18
VPS9D1-204ENST00000565023 APBA2Q99767 749 aa16.19■□□□□ 0.18
VPS9D1-204ENST00000565023 OSBPL3Q9H4L5 887 aa16.19■□□□□ 0.18
VPS9D1-204ENST00000565023 NYAP2Q9P242 653 aa16.19■□□□□ 0.18
VPS9D1-204ENST00000565023 COL6A3P12111 3177 aa16.18■□□□□ 0.18
VPS9D1-204ENST00000565023 RANBP2P49792 3224 aaKnown RBP16.18■□□□□ 0.18
VPS9D1-204ENST00000565023 CEP290O15078 2479 aa16.18■□□□□ 0.18
VPS9D1-204ENST00000565023 TRIOBPQ9H2D6 2365 aa16.18■□□□□ 0.18
VPS9D1-204ENST00000565023 IGKV6D-41A0A0C4DH26 115 aa16.18■□□□□ 0.18
VPS9D1-204ENST00000565023 SLC15A5A6NIM6 579 aa16.18■□□□□ 0.18
VPS9D1-204ENST00000565023 TSPY2A6NKD2 308 aa16.18■□□□□ 0.18
VPS9D1-204ENST00000565023 FARP2O94887 1054 aaPredicted RBP16.18■□□□□ 0.18
VPS9D1-204ENST00000565023 NDUFB10O96000 172 aa16.18■□□□□ 0.18
VPS9D1-204ENST00000565023 SDSP20132 328 aa16.18■□□□□ 0.18
VPS9D1-204ENST00000565023 HAND2P61296 217 aa16.18■□□□□ 0.18
VPS9D1-204ENST00000565023 RRP12Q5JTH9 1297 aaKnown RBP16.18■□□□□ 0.18
VPS9D1-204ENST00000565023 USP6NLQ92738 828 aa16.18■□□□□ 0.18
VPS9D1-204ENST00000565023 MTMR7Q9Y216 660 aa16.18■□□□□ 0.18
VPS9D1-204ENST00000565023 CCDC171Q6TFL3 1326 aa16.18■□□□□ 0.18
VPS9D1-204ENST00000565023 RPTORQ8N122 1335 aa16.18■□□□□ 0.18
VPS9D1-204ENST00000565023 RANBP6O60518 1105 aaKnown RBP16.17■□□□□ 0.18
VPS9D1-204ENST00000565023 PDE4AP27815 886 aa16.17■□□□□ 0.18
VPS9D1-204ENST00000565023 TMEM132BQ14DG7 1078 aa16.17■□□□□ 0.18
VPS9D1-204ENST00000565023 CWC27Q6UX04 472 aaKnown RBP16.17■□□□□ 0.18
VPS9D1-204ENST00000565023 DPP9Q86TI2 863 aa16.17■□□□□ 0.18
VPS9D1-204ENST00000565023 MB21D1Q8N884 522 aa16.17■□□□□ 0.18
VPS9D1-204ENST00000565023 NEDD1Q8NHV4 660 aa16.17■□□□□ 0.18
VPS9D1-204ENST00000565023 NPLOC4Q8TAT6 608 aa16.17■□□□□ 0.18
VPS9D1-204ENST00000565023 DPF3Q92784 378 aa16.17■□□□□ 0.18
VPS9D1-204ENST00000565023 PAK6Q9NQU5 681 aaPredicted RBP16.17■□□□□ 0.18
VPS9D1-204ENST00000565023 DIAPH3Q9NSV4 1193 aa16.17■□□□□ 0.18
VPS9D1-204ENST00000565023 MTMR4Q9NYA4 1195 aa16.17■□□□□ 0.18
VPS9D1-204ENST00000565023 FLRT1Q9NZU1 646 aa16.17■□□□□ 0.18
VPS9D1-204ENST00000565023 PPP1R9AQ9ULJ8 1098 aa16.17■□□□□ 0.18
VPS9D1-204ENST00000565023 TACC3Q9Y6A5 838 aa16.17■□□□□ 0.18
VPS9D1-204ENST00000565023 NMT2O60551 498 aa16.16■□□□□ 0.18
VPS9D1-204ENST00000565023 TTLL1O95922 423 aa16.16■□□□□ 0.18
VPS9D1-204ENST00000565023 FGAP02671 866 aa16.16■□□□□ 0.18
VPS9D1-204ENST00000565023 HSPD1P10809 573 aaKnown RBP16.16■□□□□ 0.18
VPS9D1-204ENST00000565023 XRCC5P13010 732 aaKnown RBP16.16■□□□□ 0.18
VPS9D1-204ENST00000565023 ADORA2AP29274 412 aa16.16■□□□□ 0.18
VPS9D1-204ENST00000565023 CCND3P30281 292 aaPredicted RBP16.16■□□□□ 0.18
VPS9D1-204ENST00000565023 CACNB2Q08289 660 aaPredicted RBP16.16■□□□□ 0.18
VPS9D1-204ENST00000565023 GRB14Q14449 540 aa16.16■□□□□ 0.18
VPS9D1-204ENST00000565023 KIFC2Q96AC6 838 aa16.16■□□□□ 0.18
VPS9D1-204ENST00000565023 SLF1Q9BQI6 1058 aa16.16■□□□□ 0.18
VPS9D1-204ENST00000565023 STX8Q9UNK0 236 aa16.16■□□□□ 0.18
VPS9D1-204ENST00000565023 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.16■□□□□ 0.18
VPS9D1-204ENST00000565023 CTDP1Q9Y5B0 961 aaPredicted RBP16.16■□□□□ 0.18
VPS9D1-204ENST00000565023 MFSD14CQ5VZR4 134 aa16.15■□□□□ 0.18
VPS9D1-204ENST00000565023 SLFN13Q68D06 897 aa16.15■□□□□ 0.18
VPS9D1-204ENST00000565023 CENPQQ7L2Z9 268 aaPredicted RBP16.15■□□□□ 0.18
VPS9D1-204ENST00000565023 TRMT44Q8IYL2 757 aaKnown RBP16.15■□□□□ 0.18
VPS9D1-204ENST00000565023 CPXCR1Q8N123 301 aa16.15■□□□□ 0.18
VPS9D1-204ENST00000565023 VWA5AO00534 786 aa16.14■□□□□ 0.17
VPS9D1-204ENST00000565023 CNGA1P29973 690 aa16.14■□□□□ 0.17
VPS9D1-204ENST00000565023 CYP2C19P33261 490 aa16.14■□□□□ 0.17
VPS9D1-204ENST00000565023 IKQ13123 557 aaPredicted RBP16.14■□□□□ 0.17
VPS9D1-204ENST00000565023 ALX1Q15699 326 aa16.14■□□□□ 0.17
VPS9D1-204ENST00000565023 ERICH6BQ5W0A0 696 aa16.14■□□□□ 0.17
VPS9D1-204ENST00000565023 SHCBP1Q8NEM2 672 aa16.14■□□□□ 0.17
VPS9D1-204ENST00000565023 DIS3LQ8TF46 1054 aaKnown RBP16.14■□□□□ 0.17
VPS9D1-204ENST00000565023 PAWRQ96IZ0 340 aaKnown RBP16.14■□□□□ 0.17
VPS9D1-204ENST00000565023 MROH8Q9H579 483 aa16.14■□□□□ 0.17
VPS9D1-204ENST00000565023 PLXNA1Q9UIW2 1896 aa16.14■□□□□ 0.17
VPS9D1-204ENST00000565023 PLIN4Q96Q06 1357 aa16.13■□□□□ 0.17
VPS9D1-204ENST00000565023 FRMPD3Q5JV73 1810 aa16.13■□□□□ 0.17
VPS9D1-204ENST00000565023 COBLO75128 1261 aa16.13■□□□□ 0.17
VPS9D1-204ENST00000565023 STAT3P40763 770 aa16.13■□□□□ 0.17
VPS9D1-204ENST00000565023 MAP3K21Q5TCX8 1036 aa16.13■□□□□ 0.17
VPS9D1-204ENST00000565023 RASGRP2Q7LDG7 609 aa16.13■□□□□ 0.17
VPS9D1-204ENST00000565023 TICAM2Q86XR7 235 aa16.13■□□□□ 0.17
VPS9D1-204ENST00000565023 MKL1Q969V6 931 aa16.13■□□□□ 0.17
VPS9D1-204ENST00000565023 MMP19Q99542 508 aa16.13■□□□□ 0.17
VPS9D1-204ENST00000565023 HTATIP2Q9BUP3 242 aa16.13■□□□□ 0.17
VPS9D1-204ENST00000565023 ANAPC4Q9UJX5 808 aa16.13■□□□□ 0.17
VPS9D1-204ENST00000565023 ZNF236Q9UL36 1845 aa16.12■□□□□ 0.17
VPS9D1-204ENST00000565023 TMEM232C9JQI7 657 aa16.12■□□□□ 0.17
VPS9D1-204ENST00000565023 ZBED4O75132 1171 aa16.12■□□□□ 0.17
VPS9D1-204ENST00000565023 PGK2P07205 417 aa16.12■□□□□ 0.17
VPS9D1-204ENST00000565023 FCER1AP12319 257 aa16.12■□□□□ 0.17
VPS9D1-204ENST00000565023 BMP3P12645 472 aa16.12■□□□□ 0.17
VPS9D1-204ENST00000565023 MCCP23508 829 aa16.12■□□□□ 0.17
VPS9D1-204ENST00000565023 MFAP1P55081 439 aaKnown RBP16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms