RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 SHCBP1Q8NEM2 672 aa12.93□□□□□ -0.34
VPS39-208ENST00000564994 IVNS1ABPQ9Y6Y0 642 aa12.93□□□□□ -0.34
VPS39-208ENST00000564994 DNAH12Q6ZR08 3092 aa12.93□□□□□ -0.34
VPS39-208ENST00000564994 RAD21O60216 631 aa12.92□□□□□ -0.34
VPS39-208ENST00000564994 ADORA2AP29274 412 aa12.92□□□□□ -0.34
VPS39-208ENST00000564994 PLS1Q14651 629 aa12.92□□□□□ -0.34
VPS39-208ENST00000564994 NECAB2Q7Z6G3 386 aa12.92□□□□□ -0.34
VPS39-208ENST00000564994 SMC5Q8IY18 1101 aa12.92□□□□□ -0.34
VPS39-208ENST00000564994 EXOC6Q8TAG9 804 aa12.92□□□□□ -0.34
VPS39-208ENST00000564994 NUP88Q99567 741 aaPredicted RBP12.92□□□□□ -0.34
VPS39-208ENST00000564994 LNPKQ9C0E8 428 aa12.92□□□□□ -0.34
VPS39-208ENST00000564994 GOPCQ9HD26 462 aa12.92□□□□□ -0.34
VPS39-208ENST00000564994 NYAP2Q9P242 653 aa12.92□□□□□ -0.34
VPS39-208ENST00000564994 ZBTB47Q9UFB7 747 aaPredicted RBP12.92□□□□□ -0.34
VPS39-208ENST00000564994 F5H6K3 240 aa12.91□□□□□ -0.34
VPS39-208ENST00000564994 STRNO43815 780 aa12.91□□□□□ -0.34
VPS39-208ENST00000564994 COBLO75128 1261 aa12.91□□□□□ -0.34
VPS39-208ENST00000564994 NDUFB10O96000 172 aa12.91□□□□□ -0.34
VPS39-208ENST00000564994 IGHDP01880 384 aa12.91□□□□□ -0.34
VPS39-208ENST00000564994 CYP2C19P33261 490 aa12.91□□□□□ -0.34
VPS39-208ENST00000564994 KLRC3Q07444 240 aa12.91□□□□□ -0.34
VPS39-208ENST00000564994 PPARAQ07869 468 aa12.91□□□□□ -0.34
VPS39-208ENST00000564994 AAMPQ13685 434 aa12.91□□□□□ -0.34
VPS39-208ENST00000564994 VPS53Q5VIR6 699 aa12.91□□□□□ -0.34
VPS39-208ENST00000564994 NCAPG2Q86XI2 1143 aa12.91□□□□□ -0.34
VPS39-208ENST00000564994 ZNF444Q8N0Y2 327 aaPredicted RBP12.91□□□□□ -0.34
VPS39-208ENST00000564994 TRPV1Q8NER1 839 aa12.91□□□□□ -0.34
VPS39-208ENST00000564994 REPS2Q8NFH8 660 aa12.91□□□□□ -0.34
VPS39-208ENST00000564994 EVI5LQ96CN4 794 aa12.91□□□□□ -0.34
VPS39-208ENST00000564994 CEP95Q96GE4 821 aa12.91□□□□□ -0.34
VPS39-208ENST00000564994 NACAP1Q9BZK3 213 aa12.91□□□□□ -0.34
VPS39-208ENST00000564994 NAPBQ9H115 298 aa12.91□□□□□ -0.34
VPS39-208ENST00000564994 MROH8Q9H579 483 aa12.91□□□□□ -0.34
VPS39-208ENST00000564994 CLIP2Q9UDT6 1046 aa12.91□□□□□ -0.34
VPS39-208ENST00000564994 ZNF214Q9UL59 606 aaPredicted RBP12.91□□□□□ -0.34
VPS39-208ENST00000564994 PPP1R9AQ9ULJ8 1098 aa12.91□□□□□ -0.34
VPS39-208ENST00000564994 SMCHD1A6NHR9 2005 aa12.91□□□□□ -0.34
VPS39-208ENST00000564994 LAMA3Q16787 3333 aa12.9□□□□□ -0.34
VPS39-208ENST00000564994 VWA5AO00534 786 aa12.9□□□□□ -0.34
VPS39-208ENST00000564994 EVI5O60447 810 aa12.9□□□□□ -0.34
VPS39-208ENST00000564994 FAM47AQ5JRC9 791 aa12.9□□□□□ -0.34
VPS39-208ENST00000564994 MFSD14CQ5VZR4 134 aa12.9□□□□□ -0.34
VPS39-208ENST00000564994 B4GALNT3Q6L9W6 998 aa12.9□□□□□ -0.34
VPS39-208ENST00000564994 CHRDL2Q6WN34 429 aa12.9□□□□□ -0.34
VPS39-208ENST00000564994 DPP9Q86TI2 863 aa12.9□□□□□ -0.34
VPS39-208ENST00000564994 NEDD1Q8NHV4 660 aa12.9□□□□□ -0.34
VPS39-208ENST00000564994 MKL1Q969V6 931 aa12.9□□□□□ -0.34
VPS39-208ENST00000564994 FAM227BQ96M60 508 aa12.9□□□□□ -0.34
VPS39-208ENST00000564994 NBPF3Q9H094 633 aa12.9□□□□□ -0.34
VPS39-208ENST00000564994 ZNF287Q9HBT7 754 aa12.9□□□□□ -0.34
VPS39-208ENST00000564994 INCENPQ9NQS7 918 aa12.9□□□□□ -0.34
VPS39-208ENST00000564994 MTMR4Q9NYA4 1195 aa12.9□□□□□ -0.34
VPS39-208ENST00000564994 TACC3Q9Y6A5 838 aa12.9□□□□□ -0.34
VPS39-208ENST00000564994 PLIN4Q96Q06 1357 aa12.9□□□□□ -0.34
VPS39-208ENST00000564994 PFASO15067 1338 aa12.89□□□□□ -0.35
VPS39-208ENST00000564994 A0A0D9SFI3 127 aa12.89□□□□□ -0.35
VPS39-208ENST00000564994 TFAP4Q01664 338 aa12.89□□□□□ -0.35
VPS39-208ENST00000564994 RIOX2Q8IUF8 465 aa12.89□□□□□ -0.35
VPS39-208ENST00000564994 ABRAQ8N0Z2 381 aa12.89□□□□□ -0.35
VPS39-208ENST00000564994 LRRC47Q8N1G4 583 aaKnown RBP12.89□□□□□ -0.35
VPS39-208ENST00000564994 SLF1Q9BQI6 1058 aa12.89□□□□□ -0.35
VPS39-208ENST00000564994 PRO3102Q9H379 93 aa12.89□□□□□ -0.35
VPS39-208ENST00000564994 RWDD1Q9H446 243 aaPredicted RBP12.89□□□□□ -0.35
VPS39-208ENST00000564994 C11orf49Q9H6J7 331 aa12.89□□□□□ -0.35
VPS39-208ENST00000564994 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.89□□□□□ -0.35
VPS39-208ENST00000564994 NR2E3Q9Y5X4 410 aa12.89□□□□□ -0.35
VPS39-208ENST00000564994 SLC25A27O95847 323 aa12.88□□□□□ -0.35
VPS39-208ENST00000564994 TTLL1O95922 423 aa12.88□□□□□ -0.35
VPS39-208ENST00000564994 COL6A1P12109 1028 aa12.88□□□□□ -0.35
VPS39-208ENST00000564994 CYBAP13498 195 aa12.88□□□□□ -0.35
VPS39-208ENST00000564994 STAT3P40763 770 aa12.88□□□□□ -0.35
VPS39-208ENST00000564994 FXR1P51114 621 aaKnown RBP eCLIP12.88□□□□□ -0.35
VPS39-208ENST00000564994 CTDSPL2Q05D32 466 aa12.88□□□□□ -0.35
VPS39-208ENST00000564994 PDE4BQ07343 736 aa12.88□□□□□ -0.35
VPS39-208ENST00000564994 OLFML2BQ68BL8 750 aa12.88□□□□□ -0.35
VPS39-208ENST00000564994 HELLSQ9NRZ9 838 aa12.88□□□□□ -0.35
VPS39-208ENST00000564994 RBM27Q9P2N5 1060 aaKnown RBP12.88□□□□□ -0.35
VPS39-208ENST00000564994 DDX20Q9UHI6 824 aaKnown RBP12.88□□□□□ -0.35
VPS39-208ENST00000564994 PGK2P07205 417 aa12.87□□□□□ -0.35
VPS39-208ENST00000564994 SLC3A2P08195 630 aaKnown RBP12.87□□□□□ -0.35
VPS39-208ENST00000564994 TSPY3P0CV98 308 aa12.87□□□□□ -0.35
VPS39-208ENST00000564994 TSPY8P0CW00 308 aa12.87□□□□□ -0.35
VPS39-208ENST00000564994 FCER1AP12319 257 aa12.87□□□□□ -0.35
VPS39-208ENST00000564994 CNGA1P29973 690 aa12.87□□□□□ -0.35
VPS39-208ENST00000564994 NUCB1Q02818 461 aa12.87□□□□□ -0.35
VPS39-208ENST00000564994 NMIQ13287 307 aaPredicted RBP12.87□□□□□ -0.35
VPS39-208ENST00000564994 ZNF589Q86UQ0 364 aaPredicted RBP12.87□□□□□ -0.35
VPS39-208ENST00000564994 CHD1LQ86WJ1 897 aa12.87□□□□□ -0.35
VPS39-208ENST00000564994 PLEKHM2Q8IWE5 1019 aa12.87□□□□□ -0.35
VPS39-208ENST00000564994 GMCL1P1Q8NEA9 526 aa12.87□□□□□ -0.35
VPS39-208ENST00000564994 MAML3Q96JK9 1138 aa12.87□□□□□ -0.35
VPS39-208ENST00000564994 MMP19Q99542 508 aa12.87□□□□□ -0.35
VPS39-208ENST00000564994 IL17RBQ9NRM6 502 aa12.87□□□□□ -0.35
VPS39-208ENST00000564994 ANAPC4Q9UJX5 808 aa12.87□□□□□ -0.35
VPS39-208ENST00000564994 SYNPO2Q9UMS6 1093 aa12.87□□□□□ -0.35
VPS39-208ENST00000564994 RIPK3Q9Y572 518 aa12.87□□□□□ -0.35
VPS39-208ENST00000564994 MCM3APO60318 1980 aa12.87□□□□□ -0.35
VPS39-208ENST00000564994 NMT2O60551 498 aa12.86□□□□□ -0.35
VPS39-208ENST00000564994 ALX1Q15699 326 aa12.86□□□□□ -0.35
VPS39-208ENST00000564994 MCMDC2Q4G0Z9 681 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms