RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 PPP1R9AQ9ULJ8 1098 aa20.59■□□□□ 0.89
VPS9D1-203ENST00000563798 SYNPO2Q9UMS6 1093 aa20.59■□□□□ 0.89
VPS9D1-203ENST00000563798 COBLO75128 1261 aa20.58■□□□□ 0.89
VPS9D1-203ENST00000563798 CYBAP13498 195 aa20.58■□□□□ 0.89
VPS9D1-203ENST00000563798 MX1P20591 662 aa20.58■□□□□ 0.89
VPS9D1-203ENST00000563798 CYP2C19P33261 490 aa20.58■□□□□ 0.89
VPS9D1-203ENST00000563798 BMP8BP34820 402 aa20.58■□□□□ 0.89
VPS9D1-203ENST00000563798 RIOX2Q8IUF8 465 aa20.58■□□□□ 0.89
VPS9D1-203ENST00000563798 GDF15Q99988 308 aa20.58■□□□□ 0.89
VPS9D1-203ENST00000563798 MKNK2Q9HBH9 465 aa20.58■□□□□ 0.89
VPS9D1-203ENST00000563798 SLC5A4Q9NY91 659 aa20.58■□□□□ 0.89
VPS9D1-203ENST00000563798 MINDY4BA8MYZ0 360 aa20.57■□□□□ 0.88
VPS9D1-203ENST00000563798 VWA5AO00534 786 aa20.57■□□□□ 0.88
VPS9D1-203ENST00000563798 ZMYM1Q5SVZ6 1142 aa20.57■□□□□ 0.88
VPS9D1-203ENST00000563798 NCAPG2Q86XI2 1143 aa20.57■□□□□ 0.88
VPS9D1-203ENST00000563798 IFNL3Q8IZI9 196 aa20.57■□□□□ 0.88
VPS9D1-203ENST00000563798 TRPV1Q8NER1 839 aa20.57■□□□□ 0.88
VPS9D1-203ENST00000563798 REPS2Q8NFH8 660 aa20.57■□□□□ 0.88
VPS9D1-203ENST00000563798 MKL1Q969V6 931 aa20.57■□□□□ 0.88
VPS9D1-203ENST00000563798 FBXO28Q9NVF7 368 aa20.57■□□□□ 0.88
VPS9D1-203ENST00000563798 TDO2P48775 406 aa20.56■□□□□ 0.88
VPS9D1-203ENST00000563798 PLS1Q14651 629 aa20.56■□□□□ 0.88
VPS9D1-203ENST00000563798 C7orf61Q8IZ16 206 aa20.56■□□□□ 0.88
VPS9D1-203ENST00000563798 NACAP1Q9BZK3 213 aa20.56■□□□□ 0.88
VPS9D1-203ENST00000563798 ZNF214Q9UL59 606 aaPredicted RBP20.56■□□□□ 0.88
VPS9D1-203ENST00000563798 FRMPD3Q5JV73 1810 aa20.55■□□□□ 0.88
VPS9D1-203ENST00000563798 F5H6K3 240 aa20.55■□□□□ 0.88
VPS9D1-203ENST00000563798 FCER1AP12319 257 aa20.55■□□□□ 0.88
VPS9D1-203ENST00000563798 COPB2P35606 906 aa20.55■□□□□ 0.88
VPS9D1-203ENST00000563798 STAT3P40763 770 aa20.55■□□□□ 0.88
VPS9D1-203ENST00000563798 KLRC3Q07444 240 aa20.55■□□□□ 0.88
VPS9D1-203ENST00000563798 HDAC1Q13547 482 aaPredicted RBP20.55■□□□□ 0.88
VPS9D1-203ENST00000563798 FAM83BQ5T0W9 1011 aa20.55■□□□□ 0.88
VPS9D1-203ENST00000563798 SEC62Q99442 399 aaKnown RBP20.55■□□□□ 0.88
VPS9D1-203ENST00000563798 STAP2Q9UGK3 403 aa20.55■□□□□ 0.88
VPS9D1-203ENST00000563798 PLIN4Q96Q06 1357 aa20.55■□□□□ 0.88
VPS9D1-203ENST00000563798 APPP05067 770 aa20.54■□□□□ 0.88
VPS9D1-203ENST00000563798 TICAM2Q86XR7 235 aa20.54■□□□□ 0.88
VPS9D1-203ENST00000563798 ZNF444Q8N0Y2 327 aaPredicted RBP20.54■□□□□ 0.88
VPS9D1-203ENST00000563798 MAML3Q96JK9 1138 aa20.54■□□□□ 0.88
VPS9D1-203ENST00000563798 CRBNQ96SW2 442 aa20.54■□□□□ 0.88
VPS9D1-203ENST00000563798 FSD1Q9BTV5 496 aa20.54■□□□□ 0.88
VPS9D1-203ENST00000563798 NRBP1Q9UHY1 535 aa20.54■□□□□ 0.88
VPS9D1-203ENST00000563798 DIS3Q9Y2L1 958 aaKnown RBP20.54■□□□□ 0.88
VPS9D1-203ENST00000563798 DNM1LO00429 736 aa20.53■□□□□ 0.88
VPS9D1-203ENST00000563798 ATP2A1O14983 1001 aa20.53■□□□□ 0.88
VPS9D1-203ENST00000563798 SEPT4O43236 478 aa20.53■□□□□ 0.88
VPS9D1-203ENST00000563798 NDUFB10O96000 172 aa20.53■□□□□ 0.88
VPS9D1-203ENST00000563798 CNGA1P29973 690 aa20.53■□□□□ 0.88
VPS9D1-203ENST00000563798 AAMPQ13685 434 aa20.53■□□□□ 0.88
VPS9D1-203ENST00000563798 SLF1Q9BQI6 1058 aa20.53■□□□□ 0.88
VPS9D1-203ENST00000563798 MTMR4Q9NYA4 1195 aa20.53■□□□□ 0.88
VPS9D1-203ENST00000563798 LRRC26Q2I0M4 334 aa20.52■□□□□ 0.88
VPS9D1-203ENST00000563798 ZNF792Q3KQV3 632 aa20.52■□□□□ 0.88
VPS9D1-203ENST00000563798 PRPF38AQ8NAV1 312 aaKnown RBP20.52■□□□□ 0.88
VPS9D1-203ENST00000563798 GMCL1P1Q8NEA9 526 aa20.52■□□□□ 0.88
VPS9D1-203ENST00000563798 NEDD1Q8NHV4 660 aa20.52■□□□□ 0.88
VPS9D1-203ENST00000563798 CLIP2Q9UDT6 1046 aa20.52■□□□□ 0.88
VPS9D1-203ENST00000563798 ZMYND8Q9ULU4 1186 aaPredicted RBP20.52■□□□□ 0.88
VPS9D1-203ENST00000563798 COL11A1P12107 1806 aaPredicted RBP20.52■□□□□ 0.88
VPS9D1-203ENST00000563798 FOXP2O15409 715 aa20.51■□□□□ 0.87
VPS9D1-203ENST00000563798 SLC3A2P08195 630 aaKnown RBP20.51■□□□□ 0.87
VPS9D1-203ENST00000563798 PDE4BQ07343 736 aa20.51■□□□□ 0.87
VPS9D1-203ENST00000563798 ANKRD45Q5TZF3 282 aa20.51■□□□□ 0.87
VPS9D1-203ENST00000563798 DHX30Q7L2E3 1194 aaKnown RBP eCLIP20.51■□□□□ 0.87
VPS9D1-203ENST00000563798 STK11IPQ8N1F8 1099 aa20.51■□□□□ 0.87
VPS9D1-203ENST00000563798 ARRDC4Q8NCT1 418 aa20.51■□□□□ 0.87
VPS9D1-203ENST00000563798 EVI5LQ96CN4 794 aa20.51■□□□□ 0.87
VPS9D1-203ENST00000563798 CEP95Q96GE4 821 aa20.51■□□□□ 0.87
VPS9D1-203ENST00000563798 MMP19Q99542 508 aa20.51■□□□□ 0.87
VPS9D1-203ENST00000563798 NUP88Q99567 741 aaPredicted RBP20.51■□□□□ 0.87
VPS9D1-203ENST00000563798 TEX13BQ9BXU2 312 aa20.51■□□□□ 0.87
VPS9D1-203ENST00000563798 NAPBQ9H115 298 aa20.51■□□□□ 0.87
VPS9D1-203ENST00000563798 PRDM1O75626 825 aa20.5■□□□□ 0.87
VPS9D1-203ENST00000563798 TTLL1O95922 423 aa20.5■□□□□ 0.87
VPS9D1-203ENST00000563798 PPARAQ07869 468 aa20.5■□□□□ 0.87
VPS9D1-203ENST00000563798 KCTD2Q14681 263 aa20.5■□□□□ 0.87
VPS9D1-203ENST00000563798 SAMD1Q6SPF0 538 aaPredicted RBP20.5■□□□□ 0.87
VPS9D1-203ENST00000563798 ZBTB47Q9UFB7 747 aaPredicted RBP20.5■□□□□ 0.87
VPS9D1-203ENST00000563798 RAD21O60216 631 aa20.49■□□□□ 0.87
VPS9D1-203ENST00000563798 PDE1AP54750 535 aa20.49■□□□□ 0.87
VPS9D1-203ENST00000563798 TINF2Q9BSI4 451 aa20.49■□□□□ 0.87
VPS9D1-203ENST00000563798 SENP6Q9GZR1 1112 aaPredicted RBP20.49■□□□□ 0.87
VPS9D1-203ENST00000563798 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.49■□□□□ 0.87
VPS9D1-203ENST00000563798 ZNFX1Q9P2E3 1918 aaKnown RBP20.49■□□□□ 0.87
VPS9D1-203ENST00000563798 SZT2Q5T011 3432 aa20.48■□□□□ 0.87
VPS9D1-203ENST00000563798 TSPY3P0CV98 308 aa20.48■□□□□ 0.87
VPS9D1-203ENST00000563798 TSPY8P0CW00 308 aa20.48■□□□□ 0.87
VPS9D1-203ENST00000563798 SYN1P17600 705 aa20.48■□□□□ 0.87
VPS9D1-203ENST00000563798 MAGEA10P43363 369 aaPredicted RBP20.48■□□□□ 0.87
VPS9D1-203ENST00000563798 MSL3Q8N5Y2 521 aaKnown RBP20.48■□□□□ 0.87
VPS9D1-203ENST00000563798 ANAPC4Q9UJX5 808 aa20.48■□□□□ 0.87
VPS9D1-203ENST00000563798 FEM1BQ9UK73 627 aa20.48■□□□□ 0.87
VPS9D1-203ENST00000563798 PGK2P07205 417 aa20.47■□□□□ 0.87
VPS9D1-203ENST00000563798 FDX1P10109 184 aa20.47■□□□□ 0.87
VPS9D1-203ENST00000563798 OAZ1P54368 228 aa20.47■□□□□ 0.87
VPS9D1-203ENST00000563798 TFAP4Q01664 338 aa20.47■□□□□ 0.87
VPS9D1-203ENST00000563798 ALX1Q15699 326 aa20.47■□□□□ 0.87
VPS9D1-203ENST00000563798 PPP4R3BQ5MIZ7 849 aa20.47■□□□□ 0.87
VPS9D1-203ENST00000563798 PRAMEF19Q5SWL8 479 aa20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms