RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 HOXC6P09630 235 aa20.03■□□□□ 0.8
CLK3-210ENST00000563112 ERCC3P19447 782 aa20.03■□□□□ 0.8
CLK3-210ENST00000563112 KLRC3Q07444 240 aa20.03■□□□□ 0.8
CLK3-210ENST00000563112 CACNB2Q08289 660 aaPredicted RBP20.03■□□□□ 0.8
CLK3-210ENST00000563112 NCAPG2Q86XI2 1143 aa20.03■□□□□ 0.8
CLK3-210ENST00000563112 ANKLE1Q8NAG6 615 aa20.03■□□□□ 0.8
CLK3-210ENST00000563112 RILPL2Q969X0 211 aa20.03■□□□□ 0.8
CLK3-210ENST00000563112 SLC5A4Q9NY91 659 aa20.03■□□□□ 0.8
CLK3-210ENST00000563112 GREB1LQ9C091 1923 aaPredicted RBP20.03■□□□□ 0.8
CLK3-210ENST00000563112 IGKV6D-41A0A0C4DH26 115 aa20.02■□□□□ 0.8
CLK3-210ENST00000563112 SLC25A27O95847 323 aa20.02■□□□□ 0.8
CLK3-210ENST00000563112 TTLL1O95922 423 aa20.02■□□□□ 0.8
CLK3-210ENST00000563112 NUCB1Q02818 461 aa20.02■□□□□ 0.8
CLK3-210ENST00000563112 MCMDC2Q4G0Z9 681 aa20.02■□□□□ 0.8
CLK3-210ENST00000563112 NECAB2Q7Z6G3 386 aa20.02■□□□□ 0.8
CLK3-210ENST00000563112 NEDD1Q8NHV4 660 aa20.02■□□□□ 0.8
CLK3-210ENST00000563112 MTMR4Q9NYA4 1195 aa20.02■□□□□ 0.8
CLK3-210ENST00000563112 PPP1R9AQ9ULJ8 1098 aa20.02■□□□□ 0.8
CLK3-210ENST00000563112 SYNPO2Q9UMS6 1093 aa20.02■□□□□ 0.8
CLK3-210ENST00000563112 TFAP4Q01664 338 aa20.01■□□□□ 0.79
CLK3-210ENST00000563112 PPP4R3BQ5MIZ7 849 aa20.01■□□□□ 0.79
CLK3-210ENST00000563112 MKL1Q969V6 931 aa20.01■□□□□ 0.79
CLK3-210ENST00000563112 CEP95Q96GE4 821 aa20.01■□□□□ 0.79
CLK3-210ENST00000563112 PAWRQ96IZ0 340 aaKnown RBP20.01■□□□□ 0.79
CLK3-210ENST00000563112 FBXO28Q9NVF7 368 aa20.01■□□□□ 0.79
CLK3-210ENST00000563112 ADAMTS5Q9UNA0 930 aa20.01■□□□□ 0.79
CLK3-210ENST00000563112 NR2E3Q9Y5X4 410 aa20.01■□□□□ 0.79
CLK3-210ENST00000563112 A0A0G2JMZ2 1700 aa20.01■□□□□ 0.79
CLK3-210ENST00000563112 VWA5AO00534 786 aa20■□□□□ 0.79
CLK3-210ENST00000563112 NDUFB10O96000 172 aa20■□□□□ 0.79
CLK3-210ENST00000563112 ADORA2AP29274 412 aa20■□□□□ 0.79
CLK3-210ENST00000563112 TMEM132BQ14DG7 1078 aa20■□□□□ 0.79
CLK3-210ENST00000563112 ALX1Q15699 326 aa20■□□□□ 0.79
CLK3-210ENST00000563112 FAM47AQ5JRC9 791 aa20■□□□□ 0.79
CLK3-210ENST00000563112 PLEKHM2Q8IWE5 1019 aa20■□□□□ 0.79
CLK3-210ENST00000563112 ABRAQ8N0Z2 381 aa20■□□□□ 0.79
CLK3-210ENST00000563112 FAM227BQ96M60 508 aa20■□□□□ 0.79
CLK3-210ENST00000563112 SLF1Q9BQI6 1058 aa20■□□□□ 0.79
CLK3-210ENST00000563112 OSBPL3Q9H4L5 887 aa20■□□□□ 0.79
CLK3-210ENST00000563112 OGDHLQ9ULD0 1010 aa20■□□□□ 0.79
CLK3-210ENST00000563112 CTDP1Q9Y5B0 961 aaPredicted RBP20■□□□□ 0.79
CLK3-210ENST00000563112 H0YGN5 161 aa19.99■□□□□ 0.79
CLK3-210ENST00000563112 FCER1AP12319 257 aa19.99■□□□□ 0.79
CLK3-210ENST00000563112 COPB2P35606 906 aa19.99■□□□□ 0.79
CLK3-210ENST00000563112 STAT3P40763 770 aa19.99■□□□□ 0.79
CLK3-210ENST00000563112 MFAP1P55081 439 aaKnown RBP19.99■□□□□ 0.79
CLK3-210ENST00000563112 CTDSPL2Q05D32 466 aa19.99■□□□□ 0.79
CLK3-210ENST00000563112 VPS53Q5VIR6 699 aa19.99■□□□□ 0.79
CLK3-210ENST00000563112 PRPF38AQ8NAV1 312 aaKnown RBP19.99■□□□□ 0.79
CLK3-210ENST00000563112 NPLOC4Q8TAT6 608 aa19.99■□□□□ 0.79
CLK3-210ENST00000563112 NUP88Q99567 741 aaPredicted RBP19.99■□□□□ 0.79
CLK3-210ENST00000563112 FLRT1Q9NZU1 646 aa19.99■□□□□ 0.79
CLK3-210ENST00000563112 MYH4Q9Y623 1939 aa19.99■□□□□ 0.79
CLK3-210ENST00000563112 PARP14Q460N5 1801 aa19.99■□□□□ 0.79
CLK3-210ENST00000563112 PLIN4Q96Q06 1357 aa19.98■□□□□ 0.79
CLK3-210ENST00000563112 A0A0D9SFI3 127 aa19.98■□□□□ 0.79
CLK3-210ENST00000563112 TSPY2A6NKD2 308 aa19.98■□□□□ 0.79
CLK3-210ENST00000563112 CCND3P30281 292 aaPredicted RBP19.98■□□□□ 0.79
CLK3-210ENST00000563112 NMIQ13287 307 aaPredicted RBP19.98■□□□□ 0.79
CLK3-210ENST00000563112 RIOX2Q8IUF8 465 aa19.98■□□□□ 0.79
CLK3-210ENST00000563112 GMCL1P1Q8NEA9 526 aa19.98■□□□□ 0.79
CLK3-210ENST00000563112 NBPF3Q9H094 633 aa19.98■□□□□ 0.79
CLK3-210ENST00000563112 ANAPC4Q9UJX5 808 aa19.98■□□□□ 0.79
CLK3-210ENST00000563112 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.98■□□□□ 0.79
CLK3-210ENST00000563112 FOXP2O15409 715 aa19.97■□□□□ 0.79
CLK3-210ENST00000563112 EVI5O60447 810 aa19.97■□□□□ 0.79
CLK3-210ENST00000563112 ZBED4O75132 1171 aa19.97■□□□□ 0.79
CLK3-210ENST00000563112 CNGA1P29973 690 aa19.97■□□□□ 0.79
CLK3-210ENST00000563112 KCTD2Q14681 263 aa19.97■□□□□ 0.79
CLK3-210ENST00000563112 OLFML2BQ68BL8 750 aa19.97■□□□□ 0.79
CLK3-210ENST00000563112 SLFN13Q68D06 897 aa19.97■□□□□ 0.79
CLK3-210ENST00000563112 LRRC47Q8N1G4 583 aaKnown RBP19.97■□□□□ 0.79
CLK3-210ENST00000563112 FEM1BQ9UK73 627 aa19.97■□□□□ 0.79
CLK3-210ENST00000563112 ZNF236Q9UL36 1845 aa19.97■□□□□ 0.79
CLK3-210ENST00000563112 RANBP6O60518 1105 aaKnown RBP19.96■□□□□ 0.79
CLK3-210ENST00000563112 MSCO60682 206 aa19.96■□□□□ 0.79
CLK3-210ENST00000563112 FGAP02671 866 aa19.96■□□□□ 0.79
CLK3-210ENST00000563112 SDSP20132 328 aa19.96■□□□□ 0.79
CLK3-210ENST00000563112 CYP2C19P33261 490 aa19.96■□□□□ 0.79
CLK3-210ENST00000563112 DIS3LQ8TF46 1054 aaKnown RBP19.96■□□□□ 0.79
CLK3-210ENST00000563112 MMP19Q99542 508 aa19.96■□□□□ 0.79
CLK3-210ENST00000563112 TOMM22Q9NS69 142 aa19.96■□□□□ 0.79
CLK3-210ENST00000563112 ZNF214Q9UL59 606 aaPredicted RBP19.96■□□□□ 0.79
CLK3-210ENST00000563112 ISY1Q9ULR0 285 aaKnown RBP19.96■□□□□ 0.79
CLK3-210ENST00000563112 STX8Q9UNK0 236 aa19.96■□□□□ 0.79
CLK3-210ENST00000563112 COL11A1P12107 1806 aaPredicted RBP19.96■□□□□ 0.79
CLK3-210ENST00000563112 CCDC171Q6TFL3 1326 aa19.96■□□□□ 0.79
CLK3-210ENST00000563112 HIP1O00291 1037 aa19.95■□□□□ 0.78
CLK3-210ENST00000563112 ORC4O43929 436 aa19.95■□□□□ 0.78
CLK3-210ENST00000563112 COBLO75128 1261 aa19.95■□□□□ 0.78
CLK3-210ENST00000563112 HSPD1P10809 573 aaKnown RBP19.95■□□□□ 0.78
CLK3-210ENST00000563112 BMP3P12645 472 aa19.95■□□□□ 0.78
CLK3-210ENST00000563112 KIFC2Q96AC6 838 aa19.95■□□□□ 0.78
CLK3-210ENST00000563112 TEX13BQ9BXU2 312 aa19.95■□□□□ 0.78
CLK3-210ENST00000563112 C11orf49Q9H6J7 331 aa19.95■□□□□ 0.78
CLK3-210ENST00000563112 DIAPH3Q9NSV4 1193 aa19.95■□□□□ 0.78
CLK3-210ENST00000563112 LHX8Q68G74 356 aa19.94■□□□□ 0.78
CLK3-210ENST00000563112 SNRNP48Q6IEG0 339 aaKnown RBP19.94■□□□□ 0.78
CLK3-210ENST00000563112 ZNF589Q86UQ0 364 aaPredicted RBP19.94■□□□□ 0.78
CLK3-210ENST00000563112 REPS2Q8NFH8 660 aa19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms