RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 TMEM132BQ14DG7 1078 aa11.01□□□□□ -0.65
HDDC3-204ENST00000559834 C1orf53Q5VUE5 145 aa11.01□□□□□ -0.65
HDDC3-204ENST00000559834 ANO1Q5XXA6 986 aa11.01□□□□□ -0.65
HDDC3-204ENST00000559834 DIEXFQ68CQ4 756 aaKnown RBP11.01□□□□□ -0.65
HDDC3-204ENST00000559834 CTR9Q6PD62 1173 aa11.01□□□□□ -0.65
HDDC3-204ENST00000559834 RIOX2Q8IUF8 465 aa11.01□□□□□ -0.65
HDDC3-204ENST00000559834 MMP19Q99542 508 aa11.01□□□□□ -0.65
HDDC3-204ENST00000559834 LRRCC1Q9C099 1032 aa11.01□□□□□ -0.65
HDDC3-204ENST00000559834 CYP2D7A0A087X1C5 515 aa11□□□□□ -0.65
HDDC3-204ENST00000559834 VWA5AO00534 786 aa11□□□□□ -0.65
HDDC3-204ENST00000559834 SNX17Q15036 470 aa11□□□□□ -0.65
HDDC3-204ENST00000559834 LRRC41Q15345 812 aa11□□□□□ -0.65
HDDC3-204ENST00000559834 SLFNL1Q499Z3 407 aa11□□□□□ -0.65
HDDC3-204ENST00000559834 RNF180Q86T96 592 aa11□□□□□ -0.65
HDDC3-204ENST00000559834 CLEC10AQ8IUN9 316 aa11□□□□□ -0.65
HDDC3-204ENST00000559834 MKNK2Q9HBH9 465 aa11□□□□□ -0.65
HDDC3-204ENST00000559834 PRDM5Q9NQX1 630 aaPredicted RBP11□□□□□ -0.65
HDDC3-204ENST00000559834 ARPP21Q9UBL0 812 aaPredicted RBP11□□□□□ -0.65
HDDC3-204ENST00000559834 TACC3Q9Y6A5 838 aa11□□□□□ -0.65
HDDC3-204ENST00000559834 TRIM60Q495X7 471 aa10.99□□□□□ -0.65
HDDC3-204ENST00000559834 SBK1Q52WX2 424 aa10.99□□□□□ -0.65
HDDC3-204ENST00000559834 ZNF697Q5TEC3 545 aa10.99□□□□□ -0.65
HDDC3-204ENST00000559834 GIMAP6Q6P9H5 292 aa10.99□□□□□ -0.65
HDDC3-204ENST00000559834 MSL3Q8N5Y2 521 aaKnown RBP10.99□□□□□ -0.65
HDDC3-204ENST00000559834 BADQ92934 168 aa10.99□□□□□ -0.65
HDDC3-204ENST00000559834 FERMT2Q96AC1 680 aa10.99□□□□□ -0.65
HDDC3-204ENST00000559834 DDX11Q96FC9 970 aa10.99□□□□□ -0.65
HDDC3-204ENST00000559834 TINF2Q9BSI4 451 aa10.99□□□□□ -0.65
HDDC3-204ENST00000559834 PUS7LQ9H0K6 701 aaKnown RBP10.99□□□□□ -0.65
HDDC3-204ENST00000559834 ZNF287Q9HBT7 754 aa10.99□□□□□ -0.65
HDDC3-204ENST00000559834 XPNPEP3Q9NQH7 507 aa10.99□□□□□ -0.65
HDDC3-204ENST00000559834 ECHDC1Q9NTX5 307 aa10.99□□□□□ -0.65
HDDC3-204ENST00000559834 PPP1R9AQ9ULJ8 1098 aa10.99□□□□□ -0.65
HDDC3-204ENST00000559834 PHF24Q9UPV7 400 aa10.99□□□□□ -0.65
HDDC3-204ENST00000559834 CNPY2Q9Y2B0 182 aa10.99□□□□□ -0.65
HDDC3-204ENST00000559834 CTDP1Q9Y5B0 961 aaPredicted RBP10.99□□□□□ -0.65
HDDC3-204ENST00000559834 RANBP2P49792 3224 aaKnown RBP10.99□□□□□ -0.65
HDDC3-204ENST00000559834 PGK2P07205 417 aa10.98□□□□□ -0.65
HDDC3-204ENST00000559834 SHHQ15465 462 aa10.98□□□□□ -0.65
HDDC3-204ENST00000559834 LRRFIP1Q32MZ4 808 aaKnown RBP10.98□□□□□ -0.65
HDDC3-204ENST00000559834 ZNF792Q3KQV3 632 aa10.98□□□□□ -0.65
HDDC3-204ENST00000559834 FAM47AQ5JRC9 791 aa10.98□□□□□ -0.65
HDDC3-204ENST00000559834 FAM83BQ5T0W9 1011 aa10.98□□□□□ -0.65
HDDC3-204ENST00000559834 ZNF444Q8N0Y2 327 aaPredicted RBP10.98□□□□□ -0.65
HDDC3-204ENST00000559834 PRPF38AQ8NAV1 312 aaKnown RBP10.98□□□□□ -0.65
HDDC3-204ENST00000559834 GPATCH3Q96I76 525 aa10.98□□□□□ -0.65
HDDC3-204ENST00000559834 STRBPQ96SI9 672 aaKnown RBP10.98□□□□□ -0.65
HDDC3-204ENST00000559834 FBXO28Q9NVF7 368 aa10.98□□□□□ -0.65
HDDC3-204ENST00000559834 NYAP2Q9P242 653 aa10.98□□□□□ -0.65
HDDC3-204ENST00000559834 RCAN3Q9UKA8 241 aa10.98□□□□□ -0.65
HDDC3-204ENST00000559834 NAV1Q8NEY1 1877 aa10.98□□□□□ -0.65
HDDC3-204ENST00000559834 MINDY4BA8MYZ0 360 aa10.97□□□□□ -0.65
HDDC3-204ENST00000559834 F5H6K3 240 aa10.97□□□□□ -0.65
HDDC3-204ENST00000559834 SMIM22K7EJ46 135 aa10.97□□□□□ -0.65
HDDC3-204ENST00000559834 ZBED4O75132 1171 aa10.97□□□□□ -0.65
HDDC3-204ENST00000559834 ZFYP08048 801 aaPredicted RBP10.97□□□□□ -0.65
HDDC3-204ENST00000559834 AKR1A1P14550 325 aa10.97□□□□□ -0.65
HDDC3-204ENST00000559834 GNAT2P19087 354 aa10.97□□□□□ -0.65
HDDC3-204ENST00000559834 TLE2Q04725 743 aa10.97□□□□□ -0.65
HDDC3-204ENST00000559834 KLRC3Q07444 240 aa10.97□□□□□ -0.65
HDDC3-204ENST00000559834 NUP133Q8WUM0 1156 aa10.97□□□□□ -0.65
HDDC3-204ENST00000559834 SLF1Q9BQI6 1058 aa10.97□□□□□ -0.65
HDDC3-204ENST00000559834 TSEN34Q9BSV6 310 aaKnown RBP10.97□□□□□ -0.65
HDDC3-204ENST00000559834 TEX13BQ9BXU2 312 aa10.97□□□□□ -0.65
HDDC3-204ENST00000559834 PDLIM7Q9NR12 457 aa10.97□□□□□ -0.65
HDDC3-204ENST00000559834 ZNF214Q9UL59 606 aaPredicted RBP10.97□□□□□ -0.65
HDDC3-204ENST00000559834 FAM184BQ9ULE4 1060 aa10.97□□□□□ -0.65
HDDC3-204ENST00000559834 ZNF236Q9UL36 1845 aa10.96□□□□□ -0.65
HDDC3-204ENST00000559834 TRIM43BA6NCK2 446 aa10.96□□□□□ -0.65
HDDC3-204ENST00000559834 GSG1L2A8MUP6 293 aa10.96□□□□□ -0.65
HDDC3-204ENST00000559834 DCDC2CA8MYV0 355 aa10.96□□□□□ -0.65
HDDC3-204ENST00000559834 PGK1P00558 417 aa10.96□□□□□ -0.65
HDDC3-204ENST00000559834 CHGBP05060 677 aa10.96□□□□□ -0.65
HDDC3-204ENST00000559834 APPP05067 770 aa10.96□□□□□ -0.65
HDDC3-204ENST00000559834 CLTBP09497 229 aa10.96□□□□□ -0.65
HDDC3-204ENST00000559834 ZNF865P0CJ78 1059 aaPredicted RBP10.96□□□□□ -0.65
HDDC3-204ENST00000559834 RAG1P15918 1043 aa10.96□□□□□ -0.65
HDDC3-204ENST00000559834 SMAD3P84022 425 aaKnown RBP10.96□□□□□ -0.65
HDDC3-204ENST00000559834 SH3RF1Q7Z6J0 888 aa10.96□□□□□ -0.65
HDDC3-204ENST00000559834 KBTBD3Q8NAB2 608 aa10.96□□□□□ -0.65
HDDC3-204ENST00000559834 REPS2Q8NFH8 660 aa10.96□□□□□ -0.65
HDDC3-204ENST00000559834 APPBP2Q92624 585 aa10.96□□□□□ -0.65
HDDC3-204ENST00000559834 TRIM43Q96BQ3 446 aaPredicted RBP10.96□□□□□ -0.65
HDDC3-204ENST00000559834 FAM161BQ96MY7 647 aa10.96□□□□□ -0.65
HDDC3-204ENST00000559834 TOX2Q96NM4 488 aa10.96□□□□□ -0.65
HDDC3-204ENST00000559834 GUCD1Q96NT3 240 aa10.96□□□□□ -0.65
HDDC3-204ENST00000559834 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.96□□□□□ -0.65
HDDC3-204ENST00000559834 SEMA6BQ9H3T3 888 aa10.96□□□□□ -0.65
HDDC3-204ENST00000559834 CLIP2Q9UDT6 1046 aa10.96□□□□□ -0.65
HDDC3-204ENST00000559834 SZT2Q5T011 3432 aa10.95□□□□□ -0.66
HDDC3-204ENST00000559834 SYNGAP1Q96PV0 1343 aa10.95□□□□□ -0.66
HDDC3-204ENST00000559834 PATL2C9JE40 543 aaKnown RBP10.95□□□□□ -0.66
HDDC3-204ENST00000559834 ATP2A1O14983 1001 aa10.95□□□□□ -0.66
HDDC3-204ENST00000559834 KIAA0355O15063 1070 aa10.95□□□□□ -0.66
HDDC3-204ENST00000559834 RNF113AO15541 343 aaKnown RBP10.95□□□□□ -0.66
HDDC3-204ENST00000559834 SMARCA5O60264 1052 aaPredicted RBP10.95□□□□□ -0.66
HDDC3-204ENST00000559834 TAL1P17542 331 aaPredicted RBP10.95□□□□□ -0.66
HDDC3-204ENST00000559834 RASA1P20936 1047 aa10.95□□□□□ -0.66
HDDC3-204ENST00000559834 SLC4A3P48751 1232 aa10.95□□□□□ -0.66
HDDC3-204ENST00000559834 TDO2P48775 406 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms