RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 C15orf52Q6ZUT6 534 aaKnown RBP12.11□□□□□ -0.47
CUX1-217ENST00000558836 BLIDQ8IZY5 108 aa12.11□□□□□ -0.47
CUX1-217ENST00000558836 ZNF579Q8NAF0 562 aaKnown RBP12.11□□□□□ -0.47
CUX1-217ENST00000558836 MED15Q96RN5 788 aa12.11□□□□□ -0.47
CUX1-217ENST00000558836 TTF2Q9UNY4 1162 aaKnown RBP12.11□□□□□ -0.47
CUX1-217ENST00000558836 LAMB1P07942 1786 aa12.11□□□□□ -0.47
CUX1-217ENST00000558836 BRWD3Q6RI45 1802 aa12.11□□□□□ -0.47
CUX1-217ENST00000558836 FRMPD2Q68DX3 1309 aaPredicted RBP12.11□□□□□ -0.47
CUX1-217ENST00000558836 SRGNP10124 158 aa12.11□□□□□ -0.47
CUX1-217ENST00000558836 CACNB3P54284 484 aa12.11□□□□□ -0.47
CUX1-217ENST00000558836 GRM4Q14833 912 aa12.11□□□□□ -0.47
CUX1-217ENST00000558836 INF2Q27J81 1249 aa12.11□□□□□ -0.47
CUX1-217ENST00000558836 CRAMP1Q96RY5 1269 aa12.11□□□□□ -0.47
CUX1-217ENST00000558836 DBNDD1Q9H9R9 158 aa12.11□□□□□ -0.47
CUX1-217ENST00000558836 DDX4Q9NQI0 724 aaKnown RBP12.11□□□□□ -0.47
CUX1-217ENST00000558836 PP2D1A8MPX8 630 aa12.1□□□□□ -0.47
CUX1-217ENST00000558836 PAGE5Q96GU1 130 aa12.1□□□□□ -0.47
CUX1-217ENST00000558836 SAMSN1Q9NSI8 373 aaKnown RBP12.1□□□□□ -0.47
CUX1-217ENST00000558836 HOOK1Q9UJC3 728 aaKnown RBP12.1□□□□□ -0.47
CUX1-217ENST00000558836 NFE2L3Q9Y4A8 694 aa12.1□□□□□ -0.47
CUX1-217ENST00000558836 USP17L5A8MUK1 530 aa12.1□□□□□ -0.47
CUX1-217ENST00000558836 G3V3G9 751 aa12.1□□□□□ -0.47
CUX1-217ENST00000558836 IKBKBO14920 756 aa12.1□□□□□ -0.47
CUX1-217ENST00000558836 TNNT1P13805 278 aa12.1□□□□□ -0.47
CUX1-217ENST00000558836 ATP2C1P98194 919 aaPredicted RBP12.1□□□□□ -0.47
CUX1-217ENST00000558836 DCAF8Q5TAQ9 597 aa12.1□□□□□ -0.47
CUX1-217ENST00000558836 DPP8Q6V1X1 898 aaPredicted RBP12.1□□□□□ -0.47
CUX1-217ENST00000558836 C16orf86Q6ZW13 317 aa12.1□□□□□ -0.47
CUX1-217ENST00000558836 SP8Q8IXZ3 490 aa12.1□□□□□ -0.47
CUX1-217ENST00000558836 LRRC47Q8N1G4 583 aaKnown RBP12.1□□□□□ -0.47
CUX1-217ENST00000558836 ATP6V0A2Q9Y487 856 aa12.1□□□□□ -0.47
CUX1-217ENST00000558836 RIOK3O14730 519 aaKnown RBP12.09□□□□□ -0.47
CUX1-217ENST00000558836 CDK11BP21127 795 aaKnown RBP12.09□□□□□ -0.47
CUX1-217ENST00000558836 SARSP49591 514 aaKnown RBP12.09□□□□□ -0.47
CUX1-217ENST00000558836 MORC3Q14149 939 aa12.09□□□□□ -0.47
CUX1-217ENST00000558836 DLEC1Q9Y238 1755 aa12.09□□□□□ -0.47
CUX1-217ENST00000558836 CD44P16070 742 aaKnown RBP12.09□□□□□ -0.47
CUX1-217ENST00000558836 ATP2B2Q01814 1243 aa12.09□□□□□ -0.47
CUX1-217ENST00000558836 TMEM60Q9H2L4 133 aa12.09□□□□□ -0.47
CUX1-217ENST00000558836 PCDHA6Q9UN73 950 aa12.09□□□□□ -0.47
CUX1-217ENST00000558836 PCDHA4Q9UN74 947 aa12.09□□□□□ -0.47
CUX1-217ENST00000558836 MAPK8IP1Q9UQF2 711 aa12.09□□□□□ -0.47
CUX1-217ENST00000558836 PCDHA8Q9Y5H6 950 aa12.09□□□□□ -0.47
CUX1-217ENST00000558836 MAST2Q6P0Q8 1798 aa12.09□□□□□ -0.47
CUX1-217ENST00000558836 CCDC194A0A1B0GVG4 234 aa12.09□□□□□ -0.47
CUX1-217ENST00000558836 PALM3A6NDB9 673 aaPredicted RBP12.09□□□□□ -0.47
CUX1-217ENST00000558836 FAM196BA6NMK8 535 aa12.09□□□□□ -0.47
CUX1-217ENST00000558836 RAD21O60216 631 aa12.09□□□□□ -0.47
CUX1-217ENST00000558836 SLFN14P0C7P3 912 aa12.09□□□□□ -0.47
CUX1-217ENST00000558836 MYRIPQ8NFW9 859 aa12.09□□□□□ -0.47
CUX1-217ENST00000558836 FERMT2Q96AC1 680 aa12.09□□□□□ -0.47
CUX1-217ENST00000558836 USP40Q9NVE5 1235 aa12.09□□□□□ -0.47
CUX1-217ENST00000558836 KLRG2A4D1S0 409 aaPredicted RBP12.08□□□□□ -0.48
CUX1-217ENST00000558836 PARP1P09874 1014 aaKnown RBP12.08□□□□□ -0.48
CUX1-217ENST00000558836 AKR1B1P15121 316 aa12.08□□□□□ -0.48
CUX1-217ENST00000558836 TERF1P54274 439 aa12.08□□□□□ -0.48
CUX1-217ENST00000558836 TCP10Q12799 353 aa12.08□□□□□ -0.48
CUX1-217ENST00000558836 NFIAQ12857 509 aa12.08□□□□□ -0.48
CUX1-217ENST00000558836 KARSQ15046 597 aaKnown RBP12.08□□□□□ -0.48
CUX1-217ENST00000558836 CREBRFQ8IUR6 639 aa12.08□□□□□ -0.48
CUX1-217ENST00000558836 NLGN1Q8N2Q7 840 aa12.08□□□□□ -0.48
CUX1-217ENST00000558836 TBC1D22AQ8WUA7 517 aa12.08□□□□□ -0.48
CUX1-217ENST00000558836 ANKS1AQ92625 1134 aa12.08□□□□□ -0.48
CUX1-217ENST00000558836 PIGSQ96S52 555 aa12.08□□□□□ -0.48
CUX1-217ENST00000558836 ZMYND15Q9H091 742 aa12.08□□□□□ -0.48
CUX1-217ENST00000558836 INTS13Q9NVM9 706 aa12.08□□□□□ -0.48
CUX1-217ENST00000558836 ROBO3Q96MS0 1386 aa12.08□□□□□ -0.48
CUX1-217ENST00000558836 SNED1Q8TER0 1413 aa12.08□□□□□ -0.48
CUX1-217ENST00000558836 STXBP3O00186 592 aa12.08□□□□□ -0.48
CUX1-217ENST00000558836 SFPQP23246 707 aaKnown RBP eCLIP12.08□□□□□ -0.481e-6■□□□□ 10
CUX1-217ENST00000558836 NAPAP54920 295 aa12.08□□□□□ -0.48
CUX1-217ENST00000558836 SHROOM1Q2M3G4 852 aaPredicted RBP12.08□□□□□ -0.48
CUX1-217ENST00000558836 NT5DC1Q5TFE4 455 aa12.08□□□□□ -0.48
CUX1-217ENST00000558836 KIAA0825Q8IV33 1275 aa12.08□□□□□ -0.48
CUX1-217ENST00000558836 ZFPM1Q8IX07 1006 aa12.08□□□□□ -0.48
CUX1-217ENST00000558836 NEDD1Q8NHV4 660 aa12.08□□□□□ -0.48
CUX1-217ENST00000558836 MTRQ99707 1265 aa12.08□□□□□ -0.48
CUX1-217ENST00000558836 NAV1Q8NEY1 1877 aa12.07□□□□□ -0.48
CUX1-217ENST00000558836 CUL4BQ13620 913 aa12.07□□□□□ -0.48
CUX1-217ENST00000558836 OSBPL5Q9H0X9 879 aaPredicted RBP12.07□□□□□ -0.48
CUX1-217ENST00000558836 ZNF287Q9HBT7 754 aa12.07□□□□□ -0.48
CUX1-217ENST00000558836 GPCPD1Q9NPB8 672 aa12.07□□□□□ -0.48
CUX1-217ENST00000558836 TCP11L1Q9NUJ3 509 aa12.07□□□□□ -0.48
CUX1-217ENST00000558836 CDK5RAP2Q96SN8 1893 aa12.07□□□□□ -0.48
CUX1-217ENST00000558836 GAKO14976 1311 aa12.07□□□□□ -0.48
CUX1-217ENST00000558836 MPHOSPH10O00566 681 aaKnown RBP12.07□□□□□ -0.48
CUX1-217ENST00000558836 PLCG2P16885 1265 aa12.07□□□□□ -0.48
CUX1-217ENST00000558836 CALML3P27482 149 aa12.07□□□□□ -0.48
CUX1-217ENST00000558836 C4orf32Q8N8J7 132 aa12.07□□□□□ -0.48
CUX1-217ENST00000558836 RASSF8Q8NHQ8 419 aa12.07□□□□□ -0.48
CUX1-217ENST00000558836 COA1Q9GZY4 146 aa12.07□□□□□ -0.48
CUX1-217ENST00000558836 BARHL2Q9NY43 387 aa12.07□□□□□ -0.48
CUX1-217ENST00000558836 SMCO2A6NFE2 343 aa12.06□□□□□ -0.48
CUX1-217ENST00000558836 CHRNA5P30532 468 aa12.06□□□□□ -0.48
CUX1-217ENST00000558836 HSP90AA2PQ14568 343 aaPredicted RBP12.06□□□□□ -0.48
CUX1-217ENST00000558836 LETM2Q2VYF4 491 aa12.06□□□□□ -0.48
CUX1-217ENST00000558836 KANK3Q6NY19 840 aa12.06□□□□□ -0.48
CUX1-217ENST00000558836 TMED8Q6PL24 325 aaPredicted RBP12.06□□□□□ -0.48
CUX1-217ENST00000558836 SLF2Q8IX21 1173 aa12.06□□□□□ -0.48
CUX1-217ENST00000558836 MLKLQ8NB16 471 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms