RNA–Protein interactions for RNA: ENST00000557713.5

SCFD1-224, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 556 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-224ENST00000557713 RTP1P59025 263 aa19.17■□□□□ 0.66
SCFD1-224ENST00000557713 C20orf194Q5TEA3 1177 aa19.17■□□□□ 0.66
SCFD1-224ENST00000557713 ANO1Q5XXA6 986 aa19.17■□□□□ 0.66
SCFD1-224ENST00000557713 SLC39A5Q6ZMH5 540 aa19.17■□□□□ 0.66
SCFD1-224ENST00000557713 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.17■□□□□ 0.66
SCFD1-224ENST00000557713 FBXO28Q9NVF7 368 aa19.17■□□□□ 0.66
SCFD1-224ENST00000557713 DNAH12Q6ZR08 3092 aa19.17■□□□□ 0.66
SCFD1-224ENST00000557713 PARP14Q460N5 1801 aa19.16■□□□□ 0.66
SCFD1-224ENST00000557713 COL6A3P12111 3177 aa19.16■□□□□ 0.66
SCFD1-224ENST00000557713 RIOX2Q8IUF8 465 aa19.16■□□□□ 0.66
SCFD1-224ENST00000557713 STRBPQ96SI9 672 aaKnown RBP19.16■□□□□ 0.66
SCFD1-224ENST00000557713 MTMR10Q9NXD2 777 aa19.16■□□□□ 0.66
SCFD1-224ENST00000557713 SBK1Q52WX2 424 aa19.15■□□□□ 0.66
SCFD1-224ENST00000557713 SAMD1Q6SPF0 538 aaPredicted RBP19.15■□□□□ 0.66
SCFD1-224ENST00000557713 LBHD1Q9BQE6 289 aaPredicted RBP19.15■□□□□ 0.66
SCFD1-224ENST00000557713 ECHDC1Q9NTX5 307 aa19.15■□□□□ 0.66
SCFD1-224ENST00000557713 ARPP21Q9UBL0 812 aaPredicted RBP19.15■□□□□ 0.66
SCFD1-224ENST00000557713 GSG1L2A8MUP6 293 aa19.14■□□□□ 0.65
SCFD1-224ENST00000557713 KBTBD13C9JR72 458 aa19.14■□□□□ 0.65
SCFD1-224ENST00000557713 VWA5AO00534 786 aa19.14■□□□□ 0.65
SCFD1-224ENST00000557713 REPS2Q8NFH8 660 aa19.14■□□□□ 0.65
SCFD1-224ENST00000557713 GOPCQ9HD26 462 aa19.14■□□□□ 0.65
SCFD1-224ENST00000557713 NRBP1Q9UHY1 535 aa19.14■□□□□ 0.65
SCFD1-224ENST00000557713 ZNF214Q9UL59 606 aaPredicted RBP19.14■□□□□ 0.65
SCFD1-224ENST00000557713 PPP1R9AQ9ULJ8 1098 aa19.14■□□□□ 0.65
SCFD1-224ENST00000557713 ATP11BQ9Y2G3 1177 aa19.14■□□□□ 0.65
SCFD1-224ENST00000557713 MYH7P12883 1935 aa19.13■□□□□ 0.65
SCFD1-224ENST00000557713 PGK2P07205 417 aa19.13■□□□□ 0.65
SCFD1-224ENST00000557713 STAT3P40763 770 aa19.13■□□□□ 0.65
SCFD1-224ENST00000557713 ADCYAP1R1P41586 468 aa19.13■□□□□ 0.65
SCFD1-224ENST00000557713 SNX17Q15036 470 aa19.13■□□□□ 0.65
SCFD1-224ENST00000557713 LRRC41Q15345 812 aa19.13■□□□□ 0.65
SCFD1-224ENST00000557713 ZNF792Q3KQV3 632 aa19.13■□□□□ 0.65
SCFD1-224ENST00000557713 FAM83BQ5T0W9 1011 aa19.13■□□□□ 0.65
SCFD1-224ENST00000557713 GIMAP6Q6P9H5 292 aa19.13■□□□□ 0.65
SCFD1-224ENST00000557713 MMP19Q99542 508 aa19.13■□□□□ 0.65
SCFD1-224ENST00000557713 PRKAG2Q9UGJ0 569 aa19.13■□□□□ 0.65
SCFD1-224ENST00000557713 STXBP5LQ9Y2K9 1186 aa19.13■□□□□ 0.65
SCFD1-224ENST00000557713 DIS3Q9Y2L1 958 aaKnown RBP19.13■□□□□ 0.65
SCFD1-224ENST00000557713 POTEB2H3BUK9 544 aa19.12■□□□□ 0.65
SCFD1-224ENST00000557713 RASA1P20936 1047 aa19.12■□□□□ 0.65
SCFD1-224ENST00000557713 KCTD2Q14681 263 aa19.12■□□□□ 0.65
SCFD1-224ENST00000557713 FAM47AQ5JRC9 791 aa19.12■□□□□ 0.65
SCFD1-224ENST00000557713 KBTBD3Q8NAB2 608 aa19.12■□□□□ 0.65
SCFD1-224ENST00000557713 OSBP2Q969R2 916 aa19.12■□□□□ 0.65
SCFD1-224ENST00000557713 TINF2Q9BSI4 451 aa19.12■□□□□ 0.65
SCFD1-224ENST00000557713 DCTPP1Q9H773 170 aa19.12■□□□□ 0.65
SCFD1-224ENST00000557713 ZNFX1Q9P2E3 1918 aaKnown RBP19.12■□□□□ 0.65
SCFD1-224ENST00000557713 COL11A1P12107 1806 aaPredicted RBP19.11■□□□□ 0.65
SCFD1-224ENST00000557713 DLL1O00548 723 aa19.11■□□□□ 0.65
SCFD1-224ENST00000557713 C1orf53Q5VUE5 145 aa19.11■□□□□ 0.65
SCFD1-224ENST00000557713 FAM109BQ6ICB4 259 aaPredicted RBP19.11■□□□□ 0.65
SCFD1-224ENST00000557713 NYAP2Q9P242 653 aa19.11■□□□□ 0.65
SCFD1-224ENST00000557713 GREB1LQ9C091 1923 aaPredicted RBP19.11■□□□□ 0.65
SCFD1-224ENST00000557713 F5H6K3 240 aa19.1■□□□□ 0.65
SCFD1-224ENST00000557713 RNF113AO15541 343 aaKnown RBP19.1■□□□□ 0.65
SCFD1-224ENST00000557713 RAD21O60216 631 aa19.1■□□□□ 0.65
SCFD1-224ENST00000557713 MYCNP04198 464 aaPredicted RBP19.1■□□□□ 0.65
SCFD1-224ENST00000557713 TAL1P17542 331 aaPredicted RBP19.1■□□□□ 0.65
SCFD1-224ENST00000557713 COPB2P35606 906 aa19.1■□□□□ 0.65
SCFD1-224ENST00000557713 KLRC3Q07444 240 aa19.1■□□□□ 0.65
SCFD1-224ENST00000557713 TRIM60Q495X7 471 aa19.1■□□□□ 0.65
SCFD1-224ENST00000557713 APPBP2Q92624 585 aa19.1■□□□□ 0.65
SCFD1-224ENST00000557713 FERMT2Q96AC1 680 aa19.1■□□□□ 0.65
SCFD1-224ENST00000557713 NUP88Q99567 741 aaPredicted RBP19.1■□□□□ 0.65
SCFD1-224ENST00000557713 MKNK2Q9HBH9 465 aa19.1■□□□□ 0.65
SCFD1-224ENST00000557713 PHF24Q9UPV7 400 aa19.1■□□□□ 0.65
SCFD1-224ENST00000557713 LTBP2Q14767 1821 aa19.09■□□□□ 0.65
SCFD1-224ENST00000557713 ROBO3Q96MS0 1386 aa19.09■□□□□ 0.65
SCFD1-224ENST00000557713 MINDY4BA8MYZ0 360 aa19.09■□□□□ 0.65
SCFD1-224ENST00000557713 ZNF865P0CJ78 1059 aaPredicted RBP19.09■□□□□ 0.65
SCFD1-224ENST00000557713 STK11IPQ8N1F8 1099 aa19.09■□□□□ 0.65
SCFD1-224ENST00000557713 SLF1Q9BQI6 1058 aa19.09■□□□□ 0.65
SCFD1-224ENST00000557713 XPNPEP3Q9NQH7 507 aa19.09■□□□□ 0.65
SCFD1-224ENST00000557713 IGKV6D-41A0A0C4DH26 115 aa19.08■□□□□ 0.64
SCFD1-224ENST00000557713 RARBP10826 455 aa19.08■□□□□ 0.64
SCFD1-224ENST00000557713 PRPF38AQ8NAV1 312 aaKnown RBP19.08■□□□□ 0.64
SCFD1-224ENST00000557713 MKL1Q969V6 931 aa19.08■□□□□ 0.64
SCFD1-224ENST00000557713 EPB41L4AQ9HCS5 686 aaPredicted RBP19.08■□□□□ 0.64
SCFD1-224ENST00000557713 PDLIM7Q9NR12 457 aa19.08■□□□□ 0.64
SCFD1-224ENST00000557713 TRIM43BA6NCK2 446 aa19.07■□□□□ 0.64
SCFD1-224ENST00000557713 GPAA1O43292 621 aa19.07■□□□□ 0.64
SCFD1-224ENST00000557713 NDUFB10O96000 172 aa19.07■□□□□ 0.64
SCFD1-224ENST00000557713 ZFYP08048 801 aaPredicted RBP19.07■□□□□ 0.64
SCFD1-224ENST00000557713 TLE2Q04725 743 aa19.07■□□□□ 0.64
SCFD1-224ENST00000557713 SHHQ15465 462 aa19.07■□□□□ 0.64
SCFD1-224ENST00000557713 TSHZ3Q63HK5 1081 aa19.07■□□□□ 0.64
SCFD1-224ENST00000557713 SH3RF1Q7Z6J0 888 aa19.07■□□□□ 0.64
SCFD1-224ENST00000557713 BADQ92934 168 aa19.07■□□□□ 0.64
SCFD1-224ENST00000557713 TRIM43Q96BQ3 446 aaPredicted RBP19.07■□□□□ 0.64
SCFD1-224ENST00000557713 TEX13BQ9BXU2 312 aa19.07■□□□□ 0.64
SCFD1-224ENST00000557713 PRDM5Q9NQX1 630 aaPredicted RBP19.07■□□□□ 0.64
SCFD1-224ENST00000557713 CLIP2Q9UDT6 1046 aa19.07■□□□□ 0.64
SCFD1-224ENST00000557713 RIPK3Q9Y572 518 aa19.07■□□□□ 0.64
SCFD1-224ENST00000557713 ATP2A1O14983 1001 aa19.06■□□□□ 0.64
SCFD1-224ENST00000557713 PGK1P00558 417 aa19.06■□□□□ 0.64
SCFD1-224ENST00000557713 GNAT2P19087 354 aa19.06■□□□□ 0.64
SCFD1-224ENST00000557713 C9orf50Q5SZB4 431 aa19.06■□□□□ 0.64
SCFD1-224ENST00000557713 SNRNP48Q6IEG0 339 aaKnown RBP19.06■□□□□ 0.64
SCFD1-224ENST00000557713 RNF180Q86T96 592 aa19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms