RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 FPGSQ05932 587 aa9.93□□□□□ -0.82
CCDC88C-214ENST00000557507 MAPK8IP2Q13387 824 aaPredicted RBP9.93□□□□□ -0.82
CCDC88C-214ENST00000557507 TJAP1Q5JTD0 557 aa9.93□□□□□ -0.82
CCDC88C-214ENST00000557507 ABRAQ8N0Z2 381 aa9.93□□□□□ -0.82
CCDC88C-214ENST00000557507 SPICE1Q8N0Z3 855 aa9.93□□□□□ -0.82
CCDC88C-214ENST00000557507 MB21D1Q8N884 522 aa9.93□□□□□ -0.82
CCDC88C-214ENST00000557507 SYMPKQ92797 1274 aaKnown RBP9.93□□□□□ -0.82
CCDC88C-214ENST00000557507 MROH8Q9H579 483 aa9.93□□□□□ -0.82
CCDC88C-214ENST00000557507 HOXC10Q9NYD6 342 aa9.93□□□□□ -0.82
CCDC88C-214ENST00000557507 RAPGEFL1Q9UHV5 662 aa9.93□□□□□ -0.82
CCDC88C-214ENST00000557507 NOP58Q9Y2X3 529 aaKnown RBP9.93□□□□□ -0.82
CCDC88C-214ENST00000557507 TACC3Q9Y6A5 838 aa9.93□□□□□ -0.82
CCDC88C-214ENST00000557507 MAGEB6P1A0A0J9YX57 407 aa9.92□□□□□ -0.82
CCDC88C-214ENST00000557507 IPO8O15397 1037 aaKnown RBP9.92□□□□□ -0.82
CCDC88C-214ENST00000557507 ADAMTS4O75173 837 aa9.92□□□□□ -0.82
CCDC88C-214ENST00000557507 POLR3DP05423 398 aaPredicted RBP9.92□□□□□ -0.82
CCDC88C-214ENST00000557507 PGK2P07205 417 aa9.92□□□□□ -0.82
CCDC88C-214ENST00000557507 RARBP10826 455 aa9.92□□□□□ -0.82
CCDC88C-214ENST00000557507 FCER1AP12319 257 aa9.92□□□□□ -0.82
CCDC88C-214ENST00000557507 RAG1P15918 1043 aa9.92□□□□□ -0.82
CCDC88C-214ENST00000557507 COL9A1P20849 921 aa9.92□□□□□ -0.82
CCDC88C-214ENST00000557507 MAP3K12Q12852 859 aa9.92□□□□□ -0.82
CCDC88C-214ENST00000557507 TMEM132BQ14DG7 1078 aa9.92□□□□□ -0.82
CCDC88C-214ENST00000557507 SAMD1Q6SPF0 538 aaPredicted RBP9.92□□□□□ -0.82
CCDC88C-214ENST00000557507 SIAH1Q8IUQ4 282 aa9.92□□□□□ -0.82
CCDC88C-214ENST00000557507 SDR42E1Q8WUS8 393 aa9.92□□□□□ -0.82
CCDC88C-214ENST00000557507 MCM9Q9NXL9 1143 aa9.92□□□□□ -0.82
CCDC88C-214ENST00000557507 SLC5A4Q9NY91 659 aa9.92□□□□□ -0.82
CCDC88C-214ENST00000557507 PTPRSQ13332 1948 aa9.92□□□□□ -0.82
CCDC88C-214ENST00000557507 SYNRGQ9UMZ2 1314 aa9.91□□□□□ -0.82
CCDC88C-214ENST00000557507 SMIM22K7EJ46 135 aa9.91□□□□□ -0.82
CCDC88C-214ENST00000557507 TNFRSF10AO00220 468 aa9.91□□□□□ -0.82
CCDC88C-214ENST00000557507 ZNF865P0CJ78 1059 aaPredicted RBP9.91□□□□□ -0.82
CCDC88C-214ENST00000557507 AKR1B1P15121 316 aa9.91□□□□□ -0.82
CCDC88C-214ENST00000557507 PDE6AP16499 860 aa9.91□□□□□ -0.82
CCDC88C-214ENST00000557507 ICA1Q05084 483 aa9.91□□□□□ -0.82
CCDC88C-214ENST00000557507 FAAP100Q0VG06 881 aa9.91□□□□□ -0.82
CCDC88C-214ENST00000557507 TMEM179Q6ZVK1 233 aa9.91□□□□□ -0.82
CCDC88C-214ENST00000557507 RNF180Q86T96 592 aa9.91□□□□□ -0.82
CCDC88C-214ENST00000557507 LCORLQ8N3X6 602 aa9.91□□□□□ -0.82
CCDC88C-214ENST00000557507 TIFAQ96CG3 184 aa9.91□□□□□ -0.82
CCDC88C-214ENST00000557507 DYNLL2Q96FJ2 89 aa9.91□□□□□ -0.82
CCDC88C-214ENST00000557507 MMP19Q99542 508 aa9.91□□□□□ -0.82
CCDC88C-214ENST00000557507 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.91□□□□□ -0.82
CCDC88C-214ENST00000557507 TINF2Q9BSI4 451 aa9.91□□□□□ -0.82
CCDC88C-214ENST00000557507 CRNKL1Q9BZJ0 848 aaKnown RBP9.91□□□□□ -0.82
CCDC88C-214ENST00000557507 ZNF576Q9H609 170 aa9.91□□□□□ -0.82
CCDC88C-214ENST00000557507 VCPKMTQ9H867 229 aa9.91□□□□□ -0.82
CCDC88C-214ENST00000557507 DCP1AQ9NPI6 582 aaPredicted RBP9.91□□□□□ -0.82
CCDC88C-214ENST00000557507 TMEM39AQ9NV64 488 aa9.91□□□□□ -0.82
CCDC88C-214ENST00000557507 FBXO28Q9NVF7 368 aa9.91□□□□□ -0.82
CCDC88C-214ENST00000557507 NRBP1Q9UHY1 535 aa9.91□□□□□ -0.82
CCDC88C-214ENST00000557507 TMX2Q9Y320 296 aa9.91□□□□□ -0.82
CCDC88C-214ENST00000557507 TANC1Q9C0D5 1861 aa9.91□□□□□ -0.82
CCDC88C-214ENST00000557507 COL4A4P53420 1690 aaPredicted RBP9.9□□□□□ -0.82
CCDC88C-214ENST00000557507 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.9□□□□□ -0.82
CCDC88C-214ENST00000557507 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.9□□□□□ -0.82
CCDC88C-214ENST00000557507 TCRBV5S4A2TA0A5A2 114 aa9.9□□□□□ -0.82
CCDC88C-214ENST00000557507 MYADML2A6NDP7 307 aa9.9□□□□□ -0.82
CCDC88C-214ENST00000557507 GRXCR1A8MXD5 290 aa9.9□□□□□ -0.82
CCDC88C-214ENST00000557507 WDR46O15213 610 aaKnown RBP9.9□□□□□ -0.82
CCDC88C-214ENST00000557507 AKR1A1P14550 325 aa9.9□□□□□ -0.82
CCDC88C-214ENST00000557507 PBX2P40425 430 aa9.9□□□□□ -0.82
CCDC88C-214ENST00000557507 IRX5P78411 483 aaPredicted RBP9.9□□□□□ -0.82
CCDC88C-214ENST00000557507 ZNF792Q3KQV3 632 aa9.9□□□□□ -0.82
CCDC88C-214ENST00000557507 ANKRD33Q7Z3H0 272 aa9.9□□□□□ -0.82
CCDC88C-214ENST00000557507 AACSQ86V21 672 aa9.9□□□□□ -0.82
CCDC88C-214ENST00000557507 ARHGEF10LQ9HCE6 1279 aa9.9□□□□□ -0.82
CCDC88C-214ENST00000557507 TBX21Q9UL17 535 aa9.9□□□□□ -0.82
CCDC88C-214ENST00000557507 ZNF214Q9UL59 606 aaPredicted RBP9.9□□□□□ -0.82
CCDC88C-214ENST00000557507 ADAMTS5Q9UNA0 930 aa9.9□□□□□ -0.82
CCDC88C-214ENST00000557507 TRIP12Q14669 1992 aaPredicted RBP9.9□□□□□ -0.83
CCDC88C-214ENST00000557507 TET1Q8NFU7 2136 aa9.89□□□□□ -0.83
CCDC88C-214ENST00000557507 ZNF532Q9HCE3 1301 aa9.89□□□□□ -0.83
CCDC88C-214ENST00000557507 SLC25A27O95847 323 aa9.89□□□□□ -0.83
CCDC88C-214ENST00000557507 ACLYP53396 1101 aa9.89□□□□□ -0.83
CCDC88C-214ENST00000557507 SLFNL1Q499Z3 407 aa9.89□□□□□ -0.83
CCDC88C-214ENST00000557507 SLC9C2Q5TAH2 1124 aa9.89□□□□□ -0.83
CCDC88C-214ENST00000557507 TMED8Q6PL24 325 aaPredicted RBP9.89□□□□□ -0.83
CCDC88C-214ENST00000557507 C16orf59Q7L2K0 433 aa9.89□□□□□ -0.83
CCDC88C-214ENST00000557507 RIOX2Q8IUF8 465 aa9.89□□□□□ -0.83
CCDC88C-214ENST00000557507 REPS2Q8NFH8 660 aa9.89□□□□□ -0.83
CCDC88C-214ENST00000557507 PPM1EQ8WY54 764 aa9.89□□□□□ -0.83
CCDC88C-214ENST00000557507 PBX4Q9BYU1 374 aa9.89□□□□□ -0.83
CCDC88C-214ENST00000557507 PRDM12Q9H4Q4 367 aa9.89□□□□□ -0.83
CCDC88C-214ENST00000557507 STARD7Q9NQZ5 370 aa9.89□□□□□ -0.83
CCDC88C-214ENST00000557507 SWAP70Q9UH65 585 aa9.89□□□□□ -0.83
CCDC88C-214ENST00000557507 EXOC6BQ9Y2D4 811 aa9.89□□□□□ -0.83
CCDC88C-214ENST00000557507 TRANK1O15050 2925 aa9.89□□□□□ -0.83
CCDC88C-214ENST00000557507 CYP2D7A0A087X1C5 515 aa9.88□□□□□ -0.83
CCDC88C-214ENST00000557507 DCDC2CA8MYV0 355 aa9.88□□□□□ -0.83
CCDC88C-214ENST00000557507 VWA5AO00534 786 aa9.88□□□□□ -0.83
CCDC88C-214ENST00000557507 ADCY6O43306 1168 aa9.88□□□□□ -0.83
CCDC88C-214ENST00000557507 PRKAB2O43741 272 aa9.88□□□□□ -0.83
CCDC88C-214ENST00000557507 TIMP1P01033 207 aa9.88□□□□□ -0.83
CCDC88C-214ENST00000557507 RLBP1P12271 317 aa9.88□□□□□ -0.83
CCDC88C-214ENST00000557507 ADGRE1Q14246 886 aa9.88□□□□□ -0.83
CCDC88C-214ENST00000557507 KCTD2Q14681 263 aa9.88□□□□□ -0.83
CCDC88C-214ENST00000557507 TMEM240Q5SV17 173 aa9.88□□□□□ -0.83
CCDC88C-214ENST00000557507 RASIP1Q5U651 963 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms