RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 MTMR4Q9NYA4 1195 aa14.09□□□□□ -0.15
VRK1-204ENST00000555351 F5H6K3 240 aa14.08□□□□□ -0.16
VRK1-204ENST00000555351 FOXP2O15409 715 aa14.08□□□□□ -0.16
VRK1-204ENST00000555351 TTLL1O95922 423 aa14.08□□□□□ -0.16
VRK1-204ENST00000555351 IGHA2P01877 340 aa14.08□□□□□ -0.16
VRK1-204ENST00000555351 PRKAR2AP13861 404 aaKnown RBP14.08□□□□□ -0.16
VRK1-204ENST00000555351 MFAP1P55081 439 aaKnown RBP14.08□□□□□ -0.16
VRK1-204ENST00000555351 ATP2B2Q01814 1243 aa14.08□□□□□ -0.16
VRK1-204ENST00000555351 KLRC3Q07444 240 aa14.08□□□□□ -0.16
VRK1-204ENST00000555351 GMCL1P1Q8NEA9 526 aa14.08□□□□□ -0.16
VRK1-204ENST00000555351 ATG4CQ96DT6 458 aa14.08□□□□□ -0.16
VRK1-204ENST00000555351 SLC5A4Q9NY91 659 aa14.08□□□□□ -0.16
VRK1-204ENST00000555351 PPP1R9AQ9ULJ8 1098 aa14.08□□□□□ -0.16
VRK1-204ENST00000555351 VWA5AO00534 786 aa14.07□□□□□ -0.16
VRK1-204ENST00000555351 FGRP09769 529 aa14.07□□□□□ -0.16
VRK1-204ENST00000555351 TSPY3P0CV98 308 aa14.07□□□□□ -0.16
VRK1-204ENST00000555351 TSPY8P0CW00 308 aa14.07□□□□□ -0.16
VRK1-204ENST00000555351 NT5C2P49902 561 aa14.07□□□□□ -0.16
VRK1-204ENST00000555351 CACNB2Q08289 660 aaPredicted RBP14.07□□□□□ -0.16
VRK1-204ENST00000555351 MFSD14CQ5VZR4 134 aa14.07□□□□□ -0.16
VRK1-204ENST00000555351 OLFML2BQ68BL8 750 aa14.07□□□□□ -0.16
VRK1-204ENST00000555351 PLEKHM2Q8IWE5 1019 aa14.07□□□□□ -0.16
VRK1-204ENST00000555351 CEP95Q96GE4 821 aa14.07□□□□□ -0.16
VRK1-204ENST00000555351 CLIP2Q9UDT6 1046 aa14.07□□□□□ -0.16
VRK1-204ENST00000555351 OGDHLQ9ULD0 1010 aa14.07□□□□□ -0.16
VRK1-204ENST00000555351 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.07□□□□□ -0.16
VRK1-204ENST00000555351 SUPT16HQ9Y5B9 1047 aaKnown RBP14.07□□□□□ -0.16
VRK1-204ENST00000555351 MYH4Q9Y623 1939 aa14.06□□□□□ -0.16
VRK1-204ENST00000555351 ATP2A1O14983 1001 aa14.06□□□□□ -0.16
VRK1-204ENST00000555351 MSCO60682 206 aa14.06□□□□□ -0.16
VRK1-204ENST00000555351 NDUFB10O96000 172 aa14.06□□□□□ -0.16
VRK1-204ENST00000555351 FDX1P10109 184 aa14.06□□□□□ -0.16
VRK1-204ENST00000555351 PCP11498 1178 aaKnown RBP14.06□□□□□ -0.16
VRK1-204ENST00000555351 ERCC3P19447 782 aa14.06□□□□□ -0.16
VRK1-204ENST00000555351 TRIM32Q13049 653 aa14.06□□□□□ -0.16
VRK1-204ENST00000555351 TMEM132BQ14DG7 1078 aa14.06□□□□□ -0.16
VRK1-204ENST00000555351 FAM83BQ5T0W9 1011 aa14.06□□□□□ -0.16
VRK1-204ENST00000555351 WDR78Q5VTH9 848 aa14.06□□□□□ -0.16
VRK1-204ENST00000555351 B4GALNT3Q6L9W6 998 aa14.06□□□□□ -0.16
VRK1-204ENST00000555351 NECAB2Q7Z6G3 386 aa14.06□□□□□ -0.16
VRK1-204ENST00000555351 RIOX2Q8IUF8 465 aa14.06□□□□□ -0.16
VRK1-204ENST00000555351 PRPF38AQ8NAV1 312 aaKnown RBP14.06□□□□□ -0.16
VRK1-204ENST00000555351 SLF1Q9BQI6 1058 aa14.06□□□□□ -0.16
VRK1-204ENST00000555351 MKI67P46013 3256 aaKnown RBP14.05□□□□□ -0.16
VRK1-204ENST00000555351 A0A0D9SFI3 127 aa14.05□□□□□ -0.16
VRK1-204ENST00000555351 TRIM6-TRIM34B2RNG4 842 aa14.05□□□□□ -0.16
VRK1-204ENST00000555351 HIP1O00291 1037 aa14.05□□□□□ -0.16
VRK1-204ENST00000555351 ORC4O43929 436 aa14.05□□□□□ -0.16
VRK1-204ENST00000555351 PRDM1O75626 825 aa14.05□□□□□ -0.16
VRK1-204ENST00000555351 FCER1AP12319 257 aa14.05□□□□□ -0.16
VRK1-204ENST00000555351 ADORA2AP29274 412 aa14.05□□□□□ -0.16
VRK1-204ENST00000555351 NOVP48745 357 aa14.05□□□□□ -0.16
VRK1-204ENST00000555351 TFAP4Q01664 338 aa14.05□□□□□ -0.16
VRK1-204ENST00000555351 CCL14Q16627 93 aa14.05□□□□□ -0.16
VRK1-204ENST00000555351 CCDC129Q6ZRS4 1044 aa14.05□□□□□ -0.16
VRK1-204ENST00000555351 DPP9Q86TI2 863 aa14.05□□□□□ -0.16
VRK1-204ENST00000555351 REPS2Q8NFH8 660 aa14.05□□□□□ -0.16
VRK1-204ENST00000555351 FAM227BQ96M60 508 aa14.05□□□□□ -0.16
VRK1-204ENST00000555351 FBXO28Q9NVF7 368 aa14.05□□□□□ -0.16
VRK1-204ENST00000555351 FEM1BQ9UK73 627 aa14.05□□□□□ -0.16
VRK1-204ENST00000555351 ZNF214Q9UL59 606 aaPredicted RBP14.05□□□□□ -0.16
VRK1-204ENST00000555351 DIS3Q9Y2L1 958 aaKnown RBP14.05□□□□□ -0.16
VRK1-204ENST00000555351 NR2E3Q9Y5X4 410 aa14.05□□□□□ -0.16
VRK1-204ENST00000555351 COL11A1P12107 1806 aaPredicted RBP14.05□□□□□ -0.16
VRK1-204ENST00000555351 PLA2G6O60733 806 aa14.04□□□□□ -0.16
VRK1-204ENST00000555351 FGAP02671 866 aa14.04□□□□□ -0.16
VRK1-204ENST00000555351 HSPD1P10809 573 aaKnown RBP14.04□□□□□ -0.16
VRK1-204ENST00000555351 STAT3P40763 770 aa14.04□□□□□ -0.16
VRK1-204ENST00000555351 NMIQ13287 307 aaPredicted RBP14.04□□□□□ -0.16
VRK1-204ENST00000555351 PLS1Q14651 629 aa14.04□□□□□ -0.16
VRK1-204ENST00000555351 VPS53Q5VIR6 699 aa14.04□□□□□ -0.16
VRK1-204ENST00000555351 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.04□□□□□ -0.16
VRK1-204ENST00000555351 NCAPG2Q86XI2 1143 aa14.04□□□□□ -0.16
VRK1-204ENST00000555351 STK11IPQ8N1F8 1099 aa14.04□□□□□ -0.16
VRK1-204ENST00000555351 NPLOC4Q8TAT6 608 aa14.04□□□□□ -0.16
VRK1-204ENST00000555351 GMCL1Q96IK5 515 aa14.04□□□□□ -0.16
VRK1-204ENST00000555351 TEX13BQ9BXU2 312 aa14.04□□□□□ -0.16
VRK1-204ENST00000555351 NBPF3Q9H094 633 aa14.04□□□□□ -0.16
VRK1-204ENST00000555351 NRBP1Q9UHY1 535 aa14.04□□□□□ -0.16
VRK1-204ENST00000555351 CCDC171Q6TFL3 1326 aa14.04□□□□□ -0.16
VRK1-204ENST00000555351 TSPY2A6NKD2 308 aa14.03□□□□□ -0.16
VRK1-204ENST00000555351 SDSP20132 328 aa14.03□□□□□ -0.16
VRK1-204ENST00000555351 OAZ1P54368 228 aa14.03□□□□□ -0.16
VRK1-204ENST00000555351 LHX8Q68G74 356 aa14.03□□□□□ -0.16
VRK1-204ENST00000555351 DPF3Q92784 378 aa14.03□□□□□ -0.16
VRK1-204ENST00000555351 RILPL2Q969X0 211 aa14.03□□□□□ -0.16
VRK1-204ENST00000555351 PAWRQ96IZ0 340 aaKnown RBP14.03□□□□□ -0.16
VRK1-204ENST00000555351 FLRT1Q9NZU1 646 aa14.03□□□□□ -0.16
VRK1-204ENST00000555351 RAD21O60216 631 aa14.02□□□□□ -0.17
VRK1-204ENST00000555351 COBLO75128 1261 aa14.02□□□□□ -0.17
VRK1-204ENST00000555351 ZBED4O75132 1171 aa14.02□□□□□ -0.17
VRK1-204ENST00000555351 SLC34A2O95436 690 aa14.02□□□□□ -0.17
VRK1-204ENST00000555351 BMP3P12645 472 aa14.02□□□□□ -0.17
VRK1-204ENST00000555351 MNX1P50219 401 aaPredicted RBP14.02□□□□□ -0.17
VRK1-204ENST00000555351 KCTD2Q14681 263 aa14.02□□□□□ -0.17
VRK1-204ENST00000555351 FAM47AQ5JRC9 791 aa14.02□□□□□ -0.17
VRK1-204ENST00000555351 SLFN13Q68D06 897 aa14.02□□□□□ -0.17
VRK1-204ENST00000555351 MSL3Q8N5Y2 521 aaKnown RBP14.02□□□□□ -0.17
VRK1-204ENST00000555351 CHURC1Q8WUH1 139 aa14.02□□□□□ -0.17
VRK1-204ENST00000555351 SLC38A10Q9HBR0 1119 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms