RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 MAPK4P31152 587 aa13.72□□□□□ -0.21
CCDC88C-208ENST00000554165 IRF5Q13568 498 aa13.72□□□□□ -0.21
CCDC88C-208ENST00000554165 PLS1Q14651 629 aa13.72□□□□□ -0.21
CCDC88C-208ENST00000554165 TMEM132BQ14DG7 1078 aa13.72□□□□□ -0.21
CCDC88C-208ENST00000554165 AKNAD1Q5T1N1 836 aa13.72□□□□□ -0.21
CCDC88C-208ENST00000554165 WDR78Q5VTH9 848 aa13.72□□□□□ -0.21
CCDC88C-208ENST00000554165 PLEKHH3Q7Z736 793 aa13.72□□□□□ -0.21
CCDC88C-208ENST00000554165 NBPF11Q86T75 865 aa13.72□□□□□ -0.21
CCDC88C-208ENST00000554165 CCDC136Q96JN2 1154 aa13.72□□□□□ -0.21
CCDC88C-208ENST00000554165 DSCC1Q9BVC3 393 aa13.72□□□□□ -0.21
CCDC88C-208ENST00000554165 MTMR7Q9Y216 660 aa13.72□□□□□ -0.21
CCDC88C-208ENST00000554165 PARP14Q460N5 1801 aa13.71□□□□□ -0.21
CCDC88C-208ENST00000554165 ZNF213O14771 459 aa13.71□□□□□ -0.21
CCDC88C-208ENST00000554165 INHAP05111 366 aa13.71□□□□□ -0.21
CCDC88C-208ENST00000554165 MCCP23508 829 aa13.71□□□□□ -0.21
CCDC88C-208ENST00000554165 CCL14Q16627 93 aa13.71□□□□□ -0.21
CCDC88C-208ENST00000554165 MORN1Q5T089 497 aa13.71□□□□□ -0.21
CCDC88C-208ENST00000554165 SLFN13Q68D06 897 aa13.71□□□□□ -0.21
CCDC88C-208ENST00000554165 CCAR1Q8IX12 1150 aaKnown RBP13.71□□□□□ -0.21
CCDC88C-208ENST00000554165 SLAIN1Q8ND83 568 aa13.71□□□□□ -0.21
CCDC88C-208ENST00000554165 STAG1Q8WVM7 1258 aa13.71□□□□□ -0.21
CCDC88C-208ENST00000554165 USP6NLQ92738 828 aa13.71□□□□□ -0.21
CCDC88C-208ENST00000554165 SPATC1LQ9H0A9 340 aa13.71□□□□□ -0.21
CCDC88C-208ENST00000554165 UNC93B1Q9H1C4 597 aa13.71□□□□□ -0.21
CCDC88C-208ENST00000554165 PPP1R9AQ9ULJ8 1098 aa13.71□□□□□ -0.21
CCDC88C-208ENST00000554165 ADAMTS5Q9UNA0 930 aa13.71□□□□□ -0.21
CCDC88C-208ENST00000554165 STX8Q9UNK0 236 aa13.71□□□□□ -0.21
CCDC88C-208ENST00000554165 TAF6LQ9Y6J9 622 aa13.71□□□□□ -0.21
CCDC88C-208ENST00000554165 VWA5AO00534 786 aa13.7□□□□□ -0.22
CCDC88C-208ENST00000554165 SGSM2O43147 1006 aa13.7□□□□□ -0.22
CCDC88C-208ENST00000554165 CCL5P13501 91 aa13.7□□□□□ -0.22
CCDC88C-208ENST00000554165 ERCC3P19447 782 aa13.7□□□□□ -0.22
CCDC88C-208ENST00000554165 MFSD6Q6ZSS7 791 aa13.7□□□□□ -0.22
CCDC88C-208ENST00000554165 GMCL1P1Q8NEA9 526 aa13.7□□□□□ -0.22
CCDC88C-208ENST00000554165 REPS2Q8NFH8 660 aa13.7□□□□□ -0.22
CCDC88C-208ENST00000554165 TRIB2Q92519 343 aa13.7□□□□□ -0.22
CCDC88C-208ENST00000554165 ZKSCAN3Q9BRR0 538 aa13.7□□□□□ -0.22
CCDC88C-208ENST00000554165 PDE4DIPQ5VU43 2346 aa13.69□□□□□ -0.22
CCDC88C-208ENST00000554165 B4E1Z4 1266 aa13.69□□□□□ -0.22
CCDC88C-208ENST00000554165 NOVP48745 357 aa13.69□□□□□ -0.22
CCDC88C-208ENST00000554165 SNAP25P60880 206 aa13.69□□□□□ -0.22
CCDC88C-208ENST00000554165 CCNA1P78396 465 aa13.69□□□□□ -0.22
CCDC88C-208ENST00000554165 MLLT1Q03111 559 aaPredicted RBP13.69□□□□□ -0.22
CCDC88C-208ENST00000554165 RCSD1Q6JBY9 416 aa13.69□□□□□ -0.22
CCDC88C-208ENST00000554165 PXYLP1Q8TE99 480 aa13.69□□□□□ -0.22
CCDC88C-208ENST00000554165 KIFC2Q96AC6 838 aa13.69□□□□□ -0.22
CCDC88C-208ENST00000554165 NUDT12Q9BQG2 462 aa13.69□□□□□ -0.22
CCDC88C-208ENST00000554165 SLF1Q9BQI6 1058 aa13.69□□□□□ -0.22
CCDC88C-208ENST00000554165 CWC22Q9HCG8 908 aaKnown RBP13.69□□□□□ -0.22
CCDC88C-208ENST00000554165 FLRT1Q9NZU1 646 aa13.69□□□□□ -0.22
CCDC88C-208ENST00000554165 ISY1Q9ULR0 285 aaKnown RBP13.69□□□□□ -0.22
CCDC88C-208ENST00000554165 A0A0G2JMZ2 1700 aa13.69□□□□□ -0.22
CCDC88C-208ENST00000554165 BRCA2P51587 3418 aa13.69□□□□□ -0.22
CCDC88C-208ENST00000554165 COL11A1P12107 1806 aaPredicted RBP13.69□□□□□ -0.22
CCDC88C-208ENST00000554165 TNRC18O15417 2968 aaPredicted RBP13.68□□□□□ -0.22
CCDC88C-208ENST00000554165 TMEM232C9JQI7 657 aa13.68□□□□□ -0.22
CCDC88C-208ENST00000554165 KDM4AO75164 1064 aa13.68□□□□□ -0.22
CCDC88C-208ENST00000554165 NEFLP07196 543 aa13.68□□□□□ -0.22
CCDC88C-208ENST00000554165 BMP3P12645 472 aa13.68□□□□□ -0.22
CCDC88C-208ENST00000554165 PTPREP23469 700 aa13.68□□□□□ -0.22
CCDC88C-208ENST00000554165 SLC4A3P48751 1232 aa13.68□□□□□ -0.22
CCDC88C-208ENST00000554165 MAP2K5Q13163 448 aa13.68□□□□□ -0.22
CCDC88C-208ENST00000554165 KCTD1Q719H9 257 aa13.68□□□□□ -0.22
CCDC88C-208ENST00000554165 NCAPG2Q86XI2 1143 aa13.68□□□□□ -0.22
CCDC88C-208ENST00000554165 MB21D1Q8N884 522 aa13.68□□□□□ -0.22
CCDC88C-208ENST00000554165 NPLOC4Q8TAT6 608 aa13.68□□□□□ -0.22
CCDC88C-208ENST00000554165 RUFY2Q8WXA3 655 aa13.68□□□□□ -0.22
CCDC88C-208ENST00000554165 SHISA4Q96DD7 197 aa13.68□□□□□ -0.22
CCDC88C-208ENST00000554165 TMEM47Q9BQJ4 181 aa13.68□□□□□ -0.22
CCDC88C-208ENST00000554165 TMEM106CQ9BVX2 250 aa13.68□□□□□ -0.22
CCDC88C-208ENST00000554165 RNF208Q9H0X6 261 aa13.68□□□□□ -0.22
CCDC88C-208ENST00000554165 ZNF214Q9UL59 606 aaPredicted RBP13.68□□□□□ -0.22
CCDC88C-208ENST00000554165 RAD50Q92878 1312 aa13.67□□□□□ -0.22
CCDC88C-208ENST00000554165 SLC15A5A6NIM6 579 aa13.67□□□□□ -0.22
CCDC88C-208ENST00000554165 COBLO75128 1261 aa13.67□□□□□ -0.22
CCDC88C-208ENST00000554165 TAL1P17542 331 aaPredicted RBP13.67□□□□□ -0.22
CCDC88C-208ENST00000554165 SLC1A4P43007 532 aa13.67□□□□□ -0.22
CCDC88C-208ENST00000554165 GRB14Q14449 540 aa13.67□□□□□ -0.22
CCDC88C-208ENST00000554165 IMMTQ16891 758 aaKnown RBP13.67□□□□□ -0.22
CCDC88C-208ENST00000554165 TTBK2Q6IQ55 1244 aa13.67□□□□□ -0.22
CCDC88C-208ENST00000554165 CPXCR1Q8N123 301 aa13.67□□□□□ -0.22
CCDC88C-208ENST00000554165 PRPF38AQ8NAV1 312 aaKnown RBP13.67□□□□□ -0.22
CCDC88C-208ENST00000554165 SOCS4Q8WXH5 440 aa13.67□□□□□ -0.22
CCDC88C-208ENST00000554165 GMCL1Q96IK5 515 aa13.67□□□□□ -0.22
CCDC88C-208ENST00000554165 RNF41Q9H4P4 317 aaPredicted RBP13.67□□□□□ -0.22
CCDC88C-208ENST00000554165 RAVER2Q9HCJ3 691 aaKnown RBP13.67□□□□□ -0.22
CCDC88C-208ENST00000554165 TCP11L1Q9NUJ3 509 aa13.67□□□□□ -0.22
CCDC88C-208ENST00000554165 ZSWIM5Q9P217 1185 aa13.67□□□□□ -0.22
CCDC88C-208ENST00000554165 CTNNA3Q9UI47 895 aa13.67□□□□□ -0.22
CCDC88C-208ENST00000554165 FEM1BQ9UK73 627 aa13.67□□□□□ -0.22
CCDC88C-208ENST00000554165 SYNPO2Q9UMS6 1093 aa13.67□□□□□ -0.22
CCDC88C-208ENST00000554165 RIPK3Q9Y572 518 aa13.67□□□□□ -0.22
CCDC88C-208ENST00000554165 LAMA4Q16363 1823 aa13.67□□□□□ -0.22
CCDC88C-208ENST00000554165 FRMPD2Q68DX3 1309 aaPredicted RBP13.66□□□□□ -0.22
CCDC88C-208ENST00000554165 HMGCRP04035 888 aa13.66□□□□□ -0.22
CCDC88C-208ENST00000554165 CYP21A2P08686 494 aa13.66□□□□□ -0.22
CCDC88C-208ENST00000554165 TOP1P11387 765 aaKnown RBP13.66□□□□□ -0.22
CCDC88C-208ENST00000554165 XRCC5P13010 732 aaKnown RBP13.66□□□□□ -0.22
CCDC88C-208ENST00000554165 ADORA2AP29274 412 aa13.66□□□□□ -0.22
CCDC88C-208ENST00000554165 SLC16A2P36021 539 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms