RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 BMP3P12645 472 aa14.31□□□□□ -0.12
SHMT2-209ENST00000553949 HOXA7P31268 230 aaPredicted RBP14.31□□□□□ -0.12
SHMT2-209ENST00000553949 AK2P54819 239 aa14.31□□□□□ -0.12
SHMT2-209ENST00000553949 APOBRQ0VD83 1088 aa14.31□□□□□ -0.12
SHMT2-209ENST00000553949 USP17L24Q0WX57 530 aa14.31□□□□□ -0.12
SHMT2-209ENST00000553949 TROAPQ12815 778 aa14.31□□□□□ -0.12
SHMT2-209ENST00000553949 FAM83BQ5T0W9 1011 aa14.31□□□□□ -0.12
SHMT2-209ENST00000553949 SYNE3Q6ZMZ3 975 aa14.31□□□□□ -0.12
SHMT2-209ENST00000553949 IFNL1Q8IU54 200 aa14.31□□□□□ -0.12
SHMT2-209ENST00000553949 DNAJC5GQ8N7S2 189 aa14.31□□□□□ -0.12
SHMT2-209ENST00000553949 NUP133Q8WUM0 1156 aa14.31□□□□□ -0.12
SHMT2-209ENST00000553949 MYL10Q9BUA6 226 aa14.31□□□□□ -0.12
SHMT2-209ENST00000553949 TANGO6Q9C0B7 1094 aa14.31□□□□□ -0.12
SHMT2-209ENST00000553949 SLC45A1Q9Y2W3 748 aa14.31□□□□□ -0.12
SHMT2-209ENST00000553949 PDHXO00330 501 aa14.3□□□□□ -0.12
SHMT2-209ENST00000553949 PARP1P09874 1014 aaKnown RBP14.3□□□□□ -0.12
SHMT2-209ENST00000553949 CALM1P0DP23 149 aa14.3□□□□□ -0.12
SHMT2-209ENST00000553949 CALM2P0DP24 149 aa14.3□□□□□ -0.12
SHMT2-209ENST00000553949 CALM3P0DP25 149 aa14.3□□□□□ -0.12
SHMT2-209ENST00000553949 EVCP57679 992 aa14.3□□□□□ -0.12
SHMT2-209ENST00000553949 ZNF543Q08ER8 600 aa14.3□□□□□ -0.12
SHMT2-209ENST00000553949 PABPC4Q13310 644 aaKnown RBP eCLIP14.3□□□□□ -0.12
SHMT2-209ENST00000553949 GRM4Q14833 912 aa14.3□□□□□ -0.12
SHMT2-209ENST00000553949 ANKRD1Q15327 319 aa14.3□□□□□ -0.12
SHMT2-209ENST00000553949 CCDC96Q2M329 555 aa14.3□□□□□ -0.12
SHMT2-209ENST00000553949 OTUD7BQ6GQQ9 843 aa14.3□□□□□ -0.12
SHMT2-209ENST00000553949 APOA5Q6Q788 366 aa14.3□□□□□ -0.12
SHMT2-209ENST00000553949 CATSPERGQ6ZRH7 1159 aa14.3□□□□□ -0.12
SHMT2-209ENST00000553949 KCTD1Q719H9 257 aa14.3□□□□□ -0.12
SHMT2-209ENST00000553949 IL27Q8NEV9 243 aa14.3□□□□□ -0.12
SHMT2-209ENST00000553949 LARP6Q9BRS8 491 aaKnown RBP14.3□□□□□ -0.12
SHMT2-209ENST00000553949 ZCCHC17Q9NP64 241 aaKnown RBP14.3□□□□□ -0.12
SHMT2-209ENST00000553949 ISY1Q9ULR0 285 aaKnown RBP14.3□□□□□ -0.12
SHMT2-209ENST00000553949 ZBTB43O43298 467 aa14.29□□□□□ -0.12
SHMT2-209ENST00000553949 GOLGA8HP0CJ92 632 aa14.29□□□□□ -0.12
SHMT2-209ENST00000553949 RXRAP19793 462 aa14.29□□□□□ -0.12
SHMT2-209ENST00000553949 OSBPP22059 807 aa14.29□□□□□ -0.12
SHMT2-209ENST00000553949 ASPRV1Q53RT3 343 aa14.29□□□□□ -0.12
SHMT2-209ENST00000553949 MICU3Q86XE3 530 aa14.29□□□□□ -0.12
SHMT2-209ENST00000553949 RAB11FIP4Q86YS3 637 aa14.29□□□□□ -0.12
SHMT2-209ENST00000553949 MAP3K14Q99558 947 aa14.29□□□□□ -0.12
SHMT2-209ENST00000553949 NAP1L2Q9ULW6 460 aaPredicted RBP14.29□□□□□ -0.12
SHMT2-209ENST00000553949 FRMPD2Q68DX3 1309 aaPredicted RBP14.29□□□□□ -0.12
SHMT2-209ENST00000553949 PALM3A6NDB9 673 aaPredicted RBP14.28□□□□□ -0.12
SHMT2-209ENST00000553949 GOLGA8BA8MQT2 603 aa14.28□□□□□ -0.12
SHMT2-209ENST00000553949 TMEM232C9JQI7 657 aa14.28□□□□□ -0.12
SHMT2-209ENST00000553949 LOC285556D6RIA3 1793 aa14.28□□□□□ -0.12
SHMT2-209ENST00000553949 ST18O60284 1047 aa14.28□□□□□ -0.12
SHMT2-209ENST00000553949 FLOT1O75955 427 aa14.28□□□□□ -0.12
SHMT2-209ENST00000553949 RCAN1P53805 252 aa14.28□□□□□ -0.12
SHMT2-209ENST00000553949 IRX3P78415 501 aaPredicted RBP14.28□□□□□ -0.12
SHMT2-209ENST00000553949 GPATCH4Q5T3I0 446 aaKnown RBP14.28□□□□□ -0.12
SHMT2-209ENST00000553949 CCDC144CPQ8IYA2 1237 aa14.28□□□□□ -0.12
SHMT2-209ENST00000553949 FANCBQ8NB91 859 aa14.28□□□□□ -0.12
SHMT2-209ENST00000553949 CTCFLQ8NI51 663 aaPredicted RBP14.28□□□□□ -0.12
SHMT2-209ENST00000553949 PARK7Q99497 189 aaKnown RBP14.28□□□□□ -0.12
SHMT2-209ENST00000553949 ASCC2Q9H1I8 757 aaPredicted RBP14.28□□□□□ -0.12
SHMT2-209ENST00000553949 GPCPD1Q9NPB8 672 aa14.28□□□□□ -0.12
SHMT2-209ENST00000553949 FBXO28Q9NVF7 368 aa14.28□□□□□ -0.12
SHMT2-209ENST00000553949 MAD2L2Q9UI95 211 aa14.28□□□□□ -0.12
SHMT2-209ENST00000553949 FEM1BQ9UK73 627 aa14.28□□□□□ -0.12
SHMT2-209ENST00000553949 PNMA3Q9UL41 463 aa14.28□□□□□ -0.12
SHMT2-209ENST00000553949 TPCN1Q9ULQ1 816 aa14.28□□□□□ -0.12
SHMT2-209ENST00000553949 HPS5Q9UPZ3 1129 aa14.28□□□□□ -0.12
SHMT2-209ENST00000553949 MYH4Q9Y623 1939 aa14.28□□□□□ -0.12
SHMT2-209ENST00000553949 PTPRFP10586 1907 aa14.27□□□□□ -0.12
SHMT2-209ENST00000553949 THSD7BQ9C0I4 1608 aa14.27□□□□□ -0.12
SHMT2-209ENST00000553949 PLA2G6O60733 806 aa14.27□□□□□ -0.13
SHMT2-209ENST00000553949 ALDH1A1P00352 501 aa14.27□□□□□ -0.13
SHMT2-209ENST00000553949 CYP2C8P10632 490 aa14.27□□□□□ -0.13
SHMT2-209ENST00000553949 PDIA3P30101 505 aaKnown RBP14.27□□□□□ -0.13
SHMT2-209ENST00000553949 KIF5BP33176 963 aa14.27□□□□□ -0.13
SHMT2-209ENST00000553949 STAT2P52630 851 aa14.27□□□□□ -0.13
SHMT2-209ENST00000553949 COG2Q14746 738 aa14.27□□□□□ -0.13
SHMT2-209ENST00000553949 RTN1Q16799 776 aa14.27□□□□□ -0.13
SHMT2-209ENST00000553949 TTBK2Q6IQ55 1244 aa14.27□□□□□ -0.13
SHMT2-209ENST00000553949 NOL8Q76FK4 1167 aaKnown RBP14.27□□□□□ -0.13
SHMT2-209ENST00000553949 STAG2Q8N3U4 1231 aa14.27□□□□□ -0.13
SHMT2-209ENST00000553949 CHURC1Q8WUH1 139 aa14.27□□□□□ -0.13
SHMT2-209ENST00000553949 ZNF274Q96GC6 653 aaPredicted RBP14.27□□□□□ -0.13
SHMT2-209ENST00000553949 P2RX7Q99572 595 aaKnown RBP14.27□□□□□ -0.13
SHMT2-209ENST00000553949 SLF1Q9BQI6 1058 aa14.27□□□□□ -0.13
SHMT2-209ENST00000553949 PPP1R9AQ9ULJ8 1098 aa14.27□□□□□ -0.13
SHMT2-209ENST00000553949 CEP350Q5VT06 3117 aa14.26□□□□□ -0.13
SHMT2-209ENST00000553949 MYPNQ86TC9 1320 aa14.26□□□□□ -0.13
SHMT2-209ENST00000553949 GOLGA8AA7E2F4 631 aa14.26□□□□□ -0.13
SHMT2-209ENST00000553949 SLC16A2P36021 539 aa14.26□□□□□ -0.13
SHMT2-209ENST00000553949 METAP2P50579 478 aaKnown RBP eCLIP14.26□□□□□ -0.132e-6■■■■□ 21
SHMT2-209ENST00000553949 IKQ13123 557 aaPredicted RBP14.26□□□□□ -0.13
SHMT2-209ENST00000553949 SAMD1Q6SPF0 538 aaPredicted RBP14.26□□□□□ -0.13
SHMT2-209ENST00000553949 BTNL9Q6UXG8 535 aa14.26□□□□□ -0.13
SHMT2-209ENST00000553949 FAM160B2Q86V87 743 aa14.26□□□□□ -0.13
SHMT2-209ENST00000553949 KIFC2Q96AC6 838 aa14.26□□□□□ -0.13
SHMT2-209ENST00000553949 RBM28Q9NW13 759 aaKnown RBP14.26□□□□□ -0.13
SHMT2-209ENST00000553949 HOXC10Q9NYD6 342 aa14.26□□□□□ -0.13
SHMT2-209ENST00000553949 LIMCH1Q9UPQ0 1083 aa14.26□□□□□ -0.13
SHMT2-209ENST00000553949 NID2Q14112 1375 aa14.25□□□□□ -0.13
SHMT2-209ENST00000553949 SPDYE16A6NNV3 312 aaPredicted RBP14.25□□□□□ -0.13
SHMT2-209ENST00000553949 KLRF2D3W0D1 207 aa14.25□□□□□ -0.13
SHMT2-209ENST00000553949 DSG3P32926 999 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms