RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 SLFNL1Q499Z3 407 aa10.99□□□□□ -0.65
SYNE2-209ENST00000553308 ERC1Q8IUD2 1116 aa10.99□□□□□ -0.65
SYNE2-209ENST00000553308 MMP19Q99542 508 aa10.99□□□□□ -0.65
SYNE2-209ENST00000553308 DNAJC2Q99543 621 aaKnown RBP10.99□□□□□ -0.65
SYNE2-209ENST00000553308 ARMT1Q9H993 441 aa10.99□□□□□ -0.65
SYNE2-209ENST00000553308 FBXO28Q9NVF7 368 aa10.99□□□□□ -0.65
SYNE2-209ENST00000553308 SWAP70Q9UH65 585 aa10.99□□□□□ -0.65
SYNE2-209ENST00000553308 TMX2Q9Y320 296 aa10.99□□□□□ -0.65
SYNE2-209ENST00000553308 TACC3Q9Y6A5 838 aa10.99□□□□□ -0.65
SYNE2-209ENST00000553308 PLXNA1Q9UIW2 1896 aa10.99□□□□□ -0.65
SYNE2-209ENST00000553308 ROBO3Q96MS0 1386 aa10.99□□□□□ -0.65
SYNE2-209ENST00000553308 ZNFX1Q9P2E3 1918 aaKnown RBP10.99□□□□□ -0.65
SYNE2-209ENST00000553308 BAZ2AQ9UIF9 1905 aaKnown RBP10.98□□□□□ -0.65
SYNE2-209ENST00000553308 SMCHD1A6NHR9 2005 aa10.98□□□□□ -0.65
SYNE2-209ENST00000553308 CYP2D7A0A087X1C5 515 aa10.98□□□□□ -0.65
SYNE2-209ENST00000553308 GOLIM4O00461 696 aa10.98□□□□□ -0.65
SYNE2-209ENST00000553308 KIAA0355O15063 1070 aa10.98□□□□□ -0.65
SYNE2-209ENST00000553308 WDR46O15213 610 aaKnown RBP10.98□□□□□ -0.65
SYNE2-209ENST00000553308 PRKAB2O43741 272 aa10.98□□□□□ -0.65
SYNE2-209ENST00000553308 SLC25A27O95847 323 aa10.98□□□□□ -0.65
SYNE2-209ENST00000553308 RAG1P15918 1043 aa10.98□□□□□ -0.65
SYNE2-209ENST00000553308 RNF180Q86T96 592 aa10.98□□□□□ -0.65
SYNE2-209ENST00000553308 USP38Q8NB14 1042 aa10.98□□□□□ -0.65
SYNE2-209ENST00000553308 RHPN1Q8TCX5 695 aa10.98□□□□□ -0.65
SYNE2-209ENST00000553308 SH2D4AQ9H788 454 aa10.98□□□□□ -0.65
SYNE2-209ENST00000553308 NRBP1Q9UHY1 535 aa10.98□□□□□ -0.65
SYNE2-209ENST00000553308 LAMA2P24043 3122 aaKnown RBP10.97□□□□□ -0.65
SYNE2-209ENST00000553308 TMEM265A0A087WTH1 108 aa10.97□□□□□ -0.65
SYNE2-209ENST00000553308 CCER2I3L3R5 266 aa10.97□□□□□ -0.65
SYNE2-209ENST00000553308 MBD4O95243 580 aa10.97□□□□□ -0.65
SYNE2-209ENST00000553308 ZNF865P0CJ78 1059 aaPredicted RBP10.97□□□□□ -0.65
SYNE2-209ENST00000553308 FPGSQ05932 587 aa10.97□□□□□ -0.65
SYNE2-209ENST00000553308 KCTD2Q14681 263 aa10.97□□□□□ -0.65
SYNE2-209ENST00000553308 GRIN2CQ14957 1233 aa10.97□□□□□ -0.65
SYNE2-209ENST00000553308 ZNF792Q3KQV3 632 aa10.97□□□□□ -0.65
SYNE2-209ENST00000553308 RIOX2Q8IUF8 465 aa10.97□□□□□ -0.65
SYNE2-209ENST00000553308 TINF2Q9BSI4 451 aa10.97□□□□□ -0.65
SYNE2-209ENST00000553308 PRDM6Q9NQX0 595 aa10.97□□□□□ -0.65
SYNE2-209ENST00000553308 ADAMTS5Q9UNA0 930 aa10.97□□□□□ -0.65
SYNE2-209ENST00000553308 EYSQ5T1H1 3165 aa10.96□□□□□ -0.65
SYNE2-209ENST00000553308 SYNRGQ9UMZ2 1314 aa10.96□□□□□ -0.65
SYNE2-209ENST00000553308 APBB1O00213 710 aa10.96□□□□□ -0.65
SYNE2-209ENST00000553308 VWA5AO00534 786 aa10.96□□□□□ -0.65
SYNE2-209ENST00000553308 ADAMTS4O75173 837 aa10.96□□□□□ -0.65
SYNE2-209ENST00000553308 CHGBP05060 677 aa10.96□□□□□ -0.65
SYNE2-209ENST00000553308 EEF2P13639 858 aaKnown RBP10.96□□□□□ -0.65
SYNE2-209ENST00000553308 AKR1A1P14550 325 aa10.96□□□□□ -0.65
SYNE2-209ENST00000553308 DNAJB2P25686 324 aa10.96□□□□□ -0.65
SYNE2-209ENST00000553308 CDK8P49336 464 aa10.96□□□□□ -0.65
SYNE2-209ENST00000553308 FAAP100Q0VG06 881 aa10.96□□□□□ -0.65
SYNE2-209ENST00000553308 C12orf60Q5U649 245 aa10.96□□□□□ -0.65
SYNE2-209ENST00000553308 REPS2Q8NFH8 660 aa10.96□□□□□ -0.65
SYNE2-209ENST00000553308 CCDC17Q96LX7 622 aa10.96□□□□□ -0.65
SYNE2-209ENST00000553308 BCL11AQ9H165 835 aa10.96□□□□□ -0.65
SYNE2-209ENST00000553308 TMEM39AQ9NV64 488 aa10.96□□□□□ -0.65
SYNE2-209ENST00000553308 ZNF214Q9UL59 606 aaPredicted RBP10.96□□□□□ -0.65
SYNE2-209ENST00000553308 PPP1R9AQ9ULJ8 1098 aa10.96□□□□□ -0.65
SYNE2-209ENST00000553308 DIS3Q9Y2L1 958 aaKnown RBP10.96□□□□□ -0.65
SYNE2-209ENST00000553308 MYADML2A6NDP7 307 aa10.95□□□□□ -0.66
SYNE2-209ENST00000553308 USP17L12C9JPN9 530 aa10.95□□□□□ -0.66
SYNE2-209ENST00000553308 USP17L21D6R901 530 aa10.95□□□□□ -0.66
SYNE2-209ENST00000553308 RAD21O60216 631 aa10.95□□□□□ -0.66
SYNE2-209ENST00000553308 ADD2P35612 726 aa10.95□□□□□ -0.66
SYNE2-209ENST00000553308 STAT3P40763 770 aa10.95□□□□□ -0.66
SYNE2-209ENST00000553308 ACLYP53396 1101 aa10.95□□□□□ -0.66
SYNE2-209ENST00000553308 IRX5P78411 483 aaPredicted RBP10.95□□□□□ -0.66
SYNE2-209ENST00000553308 FAM83BQ5T0W9 1011 aa10.95□□□□□ -0.66
SYNE2-209ENST00000553308 C16orf86Q6ZW13 317 aa10.95□□□□□ -0.66
SYNE2-209ENST00000553308 ANKRD33Q7Z3H0 272 aa10.95□□□□□ -0.66
SYNE2-209ENST00000553308 CLASRPQ8N2M8 674 aaKnown RBP10.95□□□□□ -0.66
SYNE2-209ENST00000553308 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.95□□□□□ -0.66
SYNE2-209ENST00000553308 STARD7Q9NQZ5 370 aa10.95□□□□□ -0.66
SYNE2-209ENST00000553308 ATP8A2Q9NTI2 1148 aa10.95□□□□□ -0.66
SYNE2-209ENST00000553308 CNPY2Q9Y2B0 182 aa10.95□□□□□ -0.66
SYNE2-209ENST00000553308 GREB1LQ9C091 1923 aaPredicted RBP10.94□□□□□ -0.66
SYNE2-209ENST00000553308 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.94□□□□□ -0.66
SYNE2-209ENST00000553308 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.94□□□□□ -0.66
SYNE2-209ENST00000553308 DCDC2CA8MYV0 355 aa10.94□□□□□ -0.66
SYNE2-209ENST00000553308 IFIT2P09913 472 aaKnown RBP10.94□□□□□ -0.66
SYNE2-209ENST00000553308 HSP90AB4PQ58FF6 505 aa10.94□□□□□ -0.66
SYNE2-209ENST00000553308 KLHDC9Q8NEP7 349 aa10.94□□□□□ -0.66
SYNE2-209ENST00000553308 PANK1Q8TE04 598 aa10.94□□□□□ -0.66
SYNE2-209ENST00000553308 SYMPKQ92797 1274 aaKnown RBP10.94□□□□□ -0.66
SYNE2-209ENST00000553308 TIFAQ96CG3 184 aa10.94□□□□□ -0.66
SYNE2-209ENST00000553308 TOX2Q96NM4 488 aa10.94□□□□□ -0.66
SYNE2-209ENST00000553308 NUP88Q99567 741 aaPredicted RBP10.94□□□□□ -0.66
SYNE2-209ENST00000553308 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.94□□□□□ -0.665e-6■■■□□ 16.3
SYNE2-209ENST00000553308 TSEN34Q9BSV6 310 aaKnown RBP10.94□□□□□ -0.66
SYNE2-209ENST00000553308 BOLA2Q9H3K6 86 aa10.94□□□□□ -0.66
SYNE2-209ENST00000553308 ZNF576Q9H609 170 aa10.94□□□□□ -0.66
SYNE2-209ENST00000553308 KANSL2Q9H9L4 492 aa10.94□□□□□ -0.66
SYNE2-209ENST00000553308 GOPCQ9HD26 462 aa10.94□□□□□ -0.66
SYNE2-209ENST00000553308 PAG1Q9NWQ8 432 aa10.94□□□□□ -0.66
SYNE2-209ENST00000553308 ZHX1Q9UKY1 873 aaPredicted RBP10.94□□□□□ -0.66
SYNE2-209ENST00000553308 TBX21Q9UL17 535 aa10.94□□□□□ -0.66
SYNE2-209ENST00000553308 ZBED9Q6R2W3 1325 aa10.93□□□□□ -0.66
SYNE2-209ENST00000553308 ADCY6O43306 1168 aa10.93□□□□□ -0.66
SYNE2-209ENST00000553308 SNAI1O95863 264 aaPredicted RBP10.93□□□□□ -0.66
SYNE2-209ENST00000553308 TIMP1P01033 207 aa10.93□□□□□ -0.66
SYNE2-209ENST00000553308 COPB2P35606 906 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms