RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 FRMPD3Q5JV73 1810 aa14.26□□□□□ -0.13
CKAP4-202ENST00000552828 USP17L12C9JPN9 530 aa14.25□□□□□ -0.13
CKAP4-202ENST00000552828 KBTBD13C9JR72 458 aa14.25□□□□□ -0.13
CKAP4-202ENST00000552828 USP17L21D6R901 530 aa14.25□□□□□ -0.13
CKAP4-202ENST00000552828 FCER1AP12319 257 aa14.25□□□□□ -0.13
CKAP4-202ENST00000552828 PLS1Q14651 629 aa14.25□□□□□ -0.13
CKAP4-202ENST00000552828 NCAPG2Q86XI2 1143 aa14.25□□□□□ -0.13
CKAP4-202ENST00000552828 PRKAG2Q9UGJ0 569 aa14.25□□□□□ -0.13
CKAP4-202ENST00000552828 CYP2D7A0A087X1C5 515 aa14.24□□□□□ -0.13
CKAP4-202ENST00000552828 EEF2P13639 858 aaKnown RBP14.24□□□□□ -0.13
CKAP4-202ENST00000552828 LRRC41Q15345 812 aa14.24□□□□□ -0.13
CKAP4-202ENST00000552828 PRAMEF19Q5SWL8 479 aa14.24□□□□□ -0.13
CKAP4-202ENST00000552828 RIOX2Q8IUF8 465 aa14.24□□□□□ -0.13
CKAP4-202ENST00000552828 AMOTL1Q8IY63 956 aa14.24□□□□□ -0.13
CKAP4-202ENST00000552828 GUCD1Q96NT3 240 aa14.24□□□□□ -0.13
CKAP4-202ENST00000552828 ATP11BQ9Y2G3 1177 aa14.24□□□□□ -0.13
CKAP4-202ENST00000552828 DIS3Q9Y2L1 958 aaKnown RBP14.24□□□□□ -0.13
CKAP4-202ENST00000552828 SUPT16HQ9Y5B9 1047 aaKnown RBP14.24□□□□□ -0.13
CKAP4-202ENST00000552828 VWA5AO00534 786 aa14.23□□□□□ -0.13
CKAP4-202ENST00000552828 CHGBP05060 677 aa14.23□□□□□ -0.13
CKAP4-202ENST00000552828 ADCYAP1R1P41586 468 aa14.23□□□□□ -0.13
CKAP4-202ENST00000552828 ANO1Q5XXA6 986 aa14.23□□□□□ -0.13
CKAP4-202ENST00000552828 CTR9Q6PD62 1173 aa14.23□□□□□ -0.13
CKAP4-202ENST00000552828 REPS2Q8NFH8 660 aa14.23□□□□□ -0.13
CKAP4-202ENST00000552828 DDRGK1Q96HY6 314 aa14.23□□□□□ -0.13
CKAP4-202ENST00000552828 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.23□□□□□ -0.13
CKAP4-202ENST00000552828 PPP1R9AQ9ULJ8 1098 aa14.23□□□□□ -0.13
CKAP4-202ENST00000552828 PHF24Q9UPV7 400 aa14.23□□□□□ -0.13
CKAP4-202ENST00000552828 ROBO3Q96MS0 1386 aa14.22□□□□□ -0.13
CKAP4-202ENST00000552828 COPB2P35606 906 aa14.22□□□□□ -0.13
CKAP4-202ENST00000552828 STAT3P40763 770 aa14.22□□□□□ -0.13
CKAP4-202ENST00000552828 ZNF792Q3KQV3 632 aa14.22□□□□□ -0.13
CKAP4-202ENST00000552828 TRIM60Q495X7 471 aa14.22□□□□□ -0.13
CKAP4-202ENST00000552828 FAM47AQ5JRC9 791 aa14.22□□□□□ -0.13
CKAP4-202ENST00000552828 ZSCAN25Q6NSZ9 544 aa14.22□□□□□ -0.13
CKAP4-202ENST00000552828 CRBNQ96SW2 442 aa14.22□□□□□ -0.13
CKAP4-202ENST00000552828 MMP19Q99542 508 aa14.22□□□□□ -0.13
CKAP4-202ENST00000552828 TINF2Q9BSI4 451 aa14.22□□□□□ -0.13
CKAP4-202ENST00000552828 PUS7LQ9H0K6 701 aaKnown RBP14.22□□□□□ -0.13
CKAP4-202ENST00000552828 GOPCQ9HD26 462 aa14.22□□□□□ -0.13
CKAP4-202ENST00000552828 PDLIM7Q9NR12 457 aa14.22□□□□□ -0.13
CKAP4-202ENST00000552828 FBXO28Q9NVF7 368 aa14.22□□□□□ -0.13
CKAP4-202ENST00000552828 ZNF214Q9UL59 606 aaPredicted RBP14.22□□□□□ -0.13
CKAP4-202ENST00000552828 SLC4A4Q9Y6R1 1079 aa14.22□□□□□ -0.13
CKAP4-202ENST00000552828 TRIM43BA6NCK2 446 aa14.21□□□□□ -0.13
CKAP4-202ENST00000552828 PGK2P07205 417 aa14.21□□□□□ -0.13
CKAP4-202ENST00000552828 RARBP10826 455 aa14.21□□□□□ -0.13
CKAP4-202ENST00000552828 KCTD2Q14681 263 aa14.21□□□□□ -0.13
CKAP4-202ENST00000552828 SHHQ15465 462 aa14.21□□□□□ -0.13
CKAP4-202ENST00000552828 SBK1Q52WX2 424 aa14.21□□□□□ -0.13
CKAP4-202ENST00000552828 GIMAP6Q6P9H5 292 aa14.21□□□□□ -0.13
CKAP4-202ENST00000552828 TRIM43Q96BQ3 446 aaPredicted RBP14.21□□□□□ -0.13
CKAP4-202ENST00000552828 STRBPQ96SI9 672 aaKnown RBP14.21□□□□□ -0.13
CKAP4-202ENST00000552828 XPNPEP3Q9NQH7 507 aa14.21□□□□□ -0.13
CKAP4-202ENST00000552828 ARPP21Q9UBL0 812 aaPredicted RBP14.21□□□□□ -0.13
CKAP4-202ENST00000552828 VCANP13611 3396 aa14.2□□□□□ -0.14
CKAP4-202ENST00000552828 SPTBN5Q9NRC6 3674 aaKnown RBP14.2□□□□□ -0.14
CKAP4-202ENST00000552828 ZNF865P0CJ78 1059 aaPredicted RBP14.2□□□□□ -0.14
CKAP4-202ENST00000552828 C9orf50Q5SZB4 431 aa14.2□□□□□ -0.14
CKAP4-202ENST00000552828 SH3RF1Q7Z6J0 888 aa14.2□□□□□ -0.14
CKAP4-202ENST00000552828 MSL3Q8N5Y2 521 aaKnown RBP14.2□□□□□ -0.14
CKAP4-202ENST00000552828 BADQ92934 168 aa14.2□□□□□ -0.14
CKAP4-202ENST00000552828 FERMT2Q96AC1 680 aa14.2□□□□□ -0.14
CKAP4-202ENST00000552828 LRRCC1Q9C099 1032 aa14.2□□□□□ -0.14
CKAP4-202ENST00000552828 CDH23Q9H251 3354 aa14.19□□□□□ -0.14
CKAP4-202ENST00000552828 ATP2A1O14983 1001 aa14.19□□□□□ -0.14
CKAP4-202ENST00000552828 MYCNP04198 464 aaPredicted RBP14.19□□□□□ -0.14
CKAP4-202ENST00000552828 TAL1P17542 331 aaPredicted RBP14.19□□□□□ -0.14
CKAP4-202ENST00000552828 TLE2Q04725 743 aa14.19□□□□□ -0.14
CKAP4-202ENST00000552828 FAM83BQ5T0W9 1011 aa14.19□□□□□ -0.14
CKAP4-202ENST00000552828 SAMD1Q6SPF0 538 aaPredicted RBP14.19□□□□□ -0.14
CKAP4-202ENST00000552828 RNF180Q86T96 592 aa14.19□□□□□ -0.14
CKAP4-202ENST00000552828 BCL11AQ9H165 835 aa14.19□□□□□ -0.14
CKAP4-202ENST00000552828 PRDM5Q9NQX1 630 aaPredicted RBP14.19□□□□□ -0.14
CKAP4-202ENST00000552828 NYAP2Q9P242 653 aa14.19□□□□□ -0.14
CKAP4-202ENST00000552828 TACC3Q9Y6A5 838 aa14.19□□□□□ -0.14
CKAP4-202ENST00000552828 LTBP2Q14767 1821 aa14.19□□□□□ -0.14
CKAP4-202ENST00000552828 GSG1L2A8MUP6 293 aa14.18□□□□□ -0.14
CKAP4-202ENST00000552828 KIAA0355O15063 1070 aa14.18□□□□□ -0.14
CKAP4-202ENST00000552828 ADAMTS4O75173 837 aa14.18□□□□□ -0.14
CKAP4-202ENST00000552828 AKR1A1P14550 325 aa14.18□□□□□ -0.14
CKAP4-202ENST00000552828 RASA1P20936 1047 aa14.18□□□□□ -0.14
CKAP4-202ENST00000552828 ITGB8P26012 769 aa14.18□□□□□ -0.14
CKAP4-202ENST00000552828 SMAD3P84022 425 aaKnown RBP14.18□□□□□ -0.14
CKAP4-202ENST00000552828 AAMPQ13685 434 aa14.18□□□□□ -0.14
CKAP4-202ENST00000552828 ZNF697Q5TEC3 545 aa14.18□□□□□ -0.14
CKAP4-202ENST00000552828 MAMDC4Q6UXC1 1216 aa14.18□□□□□ -0.14
CKAP4-202ENST00000552828 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.18□□□□□ -0.14
CKAP4-202ENST00000552828 SLF1Q9BQI6 1058 aa14.18□□□□□ -0.14
CKAP4-202ENST00000552828 TSEN34Q9BSV6 310 aaKnown RBP14.18□□□□□ -0.14
CKAP4-202ENST00000552828 TEX13BQ9BXU2 312 aa14.18□□□□□ -0.14
CKAP4-202ENST00000552828 SEMA6BQ9H3T3 888 aa14.18□□□□□ -0.14
CKAP4-202ENST00000552828 ECHDC1Q9NTX5 307 aa14.18□□□□□ -0.14
CKAP4-202ENST00000552828 EYSQ5T1H1 3165 aa14.18□□□□□ -0.14
CKAP4-202ENST00000552828 PARP14Q460N5 1801 aa14.18□□□□□ -0.14
CKAP4-202ENST00000552828 SYNGAP1Q96PV0 1343 aa14.17□□□□□ -0.14
CKAP4-202ENST00000552828 DNAJC25-GNG10A0A024R161 153 aa14.17□□□□□ -0.14
CKAP4-202ENST00000552828 IGKV6D-41A0A0C4DH26 115 aa14.17□□□□□ -0.14
CKAP4-202ENST00000552828 A0A1W2PQ45 241 aaPredicted RBP14.17□□□□□ -0.14
CKAP4-202ENST00000552828 A0A1W2PQY0 241 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms