RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 RIOX2Q8IUF8 465 aa12.96□□□□□ -0.33
VTI1BP3-201ENST00000550220 CLEC10AQ8IUN9 316 aa12.96□□□□□ -0.33
VTI1BP3-201ENST00000550220 ARRDC4Q8NCT1 418 aa12.96□□□□□ -0.33
VTI1BP3-201ENST00000550220 DIS3LQ8TF46 1054 aaKnown RBP12.96□□□□□ -0.33
VTI1BP3-201ENST00000550220 CRBNQ96SW2 442 aa12.96□□□□□ -0.33
VTI1BP3-201ENST00000550220 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.96□□□□□ -0.33
VTI1BP3-201ENST00000550220 NAPBQ9H115 298 aa12.96□□□□□ -0.33
VTI1BP3-201ENST00000550220 STAP2Q9UGK3 403 aa12.96□□□□□ -0.33
VTI1BP3-201ENST00000550220 DDX20Q9UHI6 824 aaKnown RBP12.96□□□□□ -0.33
VTI1BP3-201ENST00000550220 NRBP1Q9UHY1 535 aa12.96□□□□□ -0.33
VTI1BP3-201ENST00000550220 NAV1Q8NEY1 1877 aa12.95□□□□□ -0.34
VTI1BP3-201ENST00000550220 SMIM22K7EJ46 135 aa12.95□□□□□ -0.34
VTI1BP3-201ENST00000550220 M0R2C6 588 aa12.95□□□□□ -0.34
VTI1BP3-201ENST00000550220 VWA5AO00534 786 aa12.95□□□□□ -0.34
VTI1BP3-201ENST00000550220 TTLL1O95922 423 aa12.95□□□□□ -0.34
VTI1BP3-201ENST00000550220 IGHA2P01877 340 aa12.95□□□□□ -0.34
VTI1BP3-201ENST00000550220 CNGA1P29973 690 aa12.95□□□□□ -0.34
VTI1BP3-201ENST00000550220 MNX1P50219 401 aaPredicted RBP12.95□□□□□ -0.34
VTI1BP3-201ENST00000550220 FXR1P51114 621 aaKnown RBP eCLIP12.95□□□□□ -0.34
VTI1BP3-201ENST00000550220 KCTD2Q14681 263 aa12.95□□□□□ -0.34
VTI1BP3-201ENST00000550220 PRPF38AQ8NAV1 312 aaKnown RBP12.95□□□□□ -0.34
VTI1BP3-201ENST00000550220 NPLOC4Q8TAT6 608 aa12.95□□□□□ -0.34
VTI1BP3-201ENST00000550220 SLF1Q9BQI6 1058 aa12.95□□□□□ -0.34
VTI1BP3-201ENST00000550220 RWDD1Q9H446 243 aaPredicted RBP12.95□□□□□ -0.34
VTI1BP3-201ENST00000550220 FLRT1Q9NZU1 646 aa12.95□□□□□ -0.34
VTI1BP3-201ENST00000550220 CLIP2Q9UDT6 1046 aa12.95□□□□□ -0.34
VTI1BP3-201ENST00000550220 DIS3Q9Y2L1 958 aaKnown RBP12.95□□□□□ -0.34
VTI1BP3-201ENST00000550220 CTDP1Q9Y5B0 961 aaPredicted RBP12.95□□□□□ -0.34
VTI1BP3-201ENST00000550220 IGKV6D-41A0A0C4DH26 115 aa12.94□□□□□ -0.34
VTI1BP3-201ENST00000550220 ZBED4O75132 1171 aa12.94□□□□□ -0.34
VTI1BP3-201ENST00000550220 TSPY3P0CV98 308 aa12.94□□□□□ -0.34
VTI1BP3-201ENST00000550220 TSPY8P0CW00 308 aa12.94□□□□□ -0.34
VTI1BP3-201ENST00000550220 FDX1P10109 184 aa12.94□□□□□ -0.34
VTI1BP3-201ENST00000550220 COL6A1P12109 1028 aa12.94□□□□□ -0.34
VTI1BP3-201ENST00000550220 CYP2C19P33261 490 aa12.94□□□□□ -0.34
VTI1BP3-201ENST00000550220 PPARAQ07869 468 aa12.94□□□□□ -0.34
VTI1BP3-201ENST00000550220 TMEM132BQ14DG7 1078 aa12.94□□□□□ -0.34
VTI1BP3-201ENST00000550220 FAM83BQ5T0W9 1011 aa12.94□□□□□ -0.34
VTI1BP3-201ENST00000550220 SAMD1Q6SPF0 538 aaPredicted RBP12.94□□□□□ -0.34
VTI1BP3-201ENST00000550220 NEDD1Q8NHV4 660 aa12.94□□□□□ -0.34
VTI1BP3-201ENST00000550220 OTUD7AQ8TE49 926 aaPredicted RBP12.94□□□□□ -0.34
VTI1BP3-201ENST00000550220 MMP19Q99542 508 aa12.94□□□□□ -0.34
VTI1BP3-201ENST00000550220 TEX13BQ9BXU2 312 aa12.94□□□□□ -0.34
VTI1BP3-201ENST00000550220 PRO3102Q9H379 93 aa12.94□□□□□ -0.34
VTI1BP3-201ENST00000550220 EPB41L4AQ9HCS5 686 aaPredicted RBP12.94□□□□□ -0.34
VTI1BP3-201ENST00000550220 HELLSQ9NRZ9 838 aa12.94□□□□□ -0.34
VTI1BP3-201ENST00000550220 MTMR4Q9NYA4 1195 aa12.94□□□□□ -0.34
VTI1BP3-201ENST00000550220 RBM27Q9P2N5 1060 aaKnown RBP12.94□□□□□ -0.34
VTI1BP3-201ENST00000550220 FEM1BQ9UK73 627 aa12.94□□□□□ -0.34
VTI1BP3-201ENST00000550220 DNM1LO00429 736 aa12.93□□□□□ -0.34
VTI1BP3-201ENST00000550220 ATP2A1O14983 1001 aa12.93□□□□□ -0.34
VTI1BP3-201ENST00000550220 SEPT4O43236 478 aa12.93□□□□□ -0.34
VTI1BP3-201ENST00000550220 COBLO75128 1261 aa12.93□□□□□ -0.34
VTI1BP3-201ENST00000550220 NDUFB10O96000 172 aa12.93□□□□□ -0.34
VTI1BP3-201ENST00000550220 CYBAP13498 195 aa12.93□□□□□ -0.34
VTI1BP3-201ENST00000550220 BMP8BP34820 402 aa12.93□□□□□ -0.34
VTI1BP3-201ENST00000550220 PDE1AP54750 535 aa12.93□□□□□ -0.34
VTI1BP3-201ENST00000550220 STK11IPQ8N1F8 1099 aa12.93□□□□□ -0.34
VTI1BP3-201ENST00000550220 MSL3Q8N5Y2 521 aaKnown RBP12.93□□□□□ -0.34
VTI1BP3-201ENST00000550220 GMCL1P1Q8NEA9 526 aa12.93□□□□□ -0.34
VTI1BP3-201ENST00000550220 SALL3Q9BXA9 1300 aa12.92□□□□□ -0.34
VTI1BP3-201ENST00000550220 OAZ1P54368 228 aa12.92□□□□□ -0.34
VTI1BP3-201ENST00000550220 TFAP4Q01664 338 aa12.92□□□□□ -0.34
VTI1BP3-201ENST00000550220 ALX1Q15699 326 aa12.92□□□□□ -0.34
VTI1BP3-201ENST00000550220 C7orf61Q8IZ16 206 aa12.92□□□□□ -0.34
VTI1BP3-201ENST00000550220 CEP95Q96GE4 821 aa12.92□□□□□ -0.34
VTI1BP3-201ENST00000550220 MAML3Q96JK9 1138 aa12.92□□□□□ -0.34
VTI1BP3-201ENST00000550220 SEC62Q99442 399 aaKnown RBP12.92□□□□□ -0.34
VTI1BP3-201ENST00000550220 FBXO28Q9NVF7 368 aa12.92□□□□□ -0.34
VTI1BP3-201ENST00000550220 FBXO40Q9UH90 709 aa12.92□□□□□ -0.34
VTI1BP3-201ENST00000550220 ZNF214Q9UL59 606 aaPredicted RBP12.92□□□□□ -0.34
VTI1BP3-201ENST00000550220 TRIOBPQ9H2D6 2365 aa12.91□□□□□ -0.34
VTI1BP3-201ENST00000550220 PRDM1O75626 825 aa12.91□□□□□ -0.34
VTI1BP3-201ENST00000550220 MCMDC2Q4G0Z9 681 aa12.91□□□□□ -0.34
VTI1BP3-201ENST00000550220 REPS2Q8NFH8 660 aa12.91□□□□□ -0.34
VTI1BP3-201ENST00000550220 CHURC1Q8WUH1 139 aa12.91□□□□□ -0.34
VTI1BP3-201ENST00000550220 TINF2Q9BSI4 451 aa12.91□□□□□ -0.34
VTI1BP3-201ENST00000550220 SENP6Q9GZR1 1112 aaPredicted RBP12.91□□□□□ -0.34
VTI1BP3-201ENST00000550220 ANAPC4Q9UJX5 808 aa12.91□□□□□ -0.34
VTI1BP3-201ENST00000550220 PLIN4Q96Q06 1357 aa12.91□□□□□ -0.34
VTI1BP3-201ENST00000550220 PFASO15067 1338 aa12.9□□□□□ -0.34
VTI1BP3-201ENST00000550220 PLXNB2O15031 1838 aa12.9□□□□□ -0.34
VTI1BP3-201ENST00000550220 TSPY2A6NKD2 308 aa12.9□□□□□ -0.34
VTI1BP3-201ENST00000550220 KBTBD13C9JR72 458 aa12.9□□□□□ -0.34
VTI1BP3-201ENST00000550220 PCP11498 1178 aaKnown RBP12.9□□□□□ -0.34
VTI1BP3-201ENST00000550220 BMP3P12645 472 aa12.9□□□□□ -0.34
VTI1BP3-201ENST00000550220 NT5C2P49902 561 aa12.9□□□□□ -0.34
VTI1BP3-201ENST00000550220 MFAP1P55081 439 aaKnown RBP12.9□□□□□ -0.34
VTI1BP3-201ENST00000550220 ZNF792Q3KQV3 632 aa12.9□□□□□ -0.34
VTI1BP3-201ENST00000550220 SLFN13Q68D06 897 aa12.9□□□□□ -0.34
VTI1BP3-201ENST00000550220 SNRNP48Q6IEG0 339 aaKnown RBP12.9□□□□□ -0.34
VTI1BP3-201ENST00000550220 FAM160B2Q86V87 743 aa12.9□□□□□ -0.34
VTI1BP3-201ENST00000550220 SMC5Q8IY18 1101 aa12.9□□□□□ -0.34
VTI1BP3-201ENST00000550220 TRPV1Q8NER1 839 aa12.9□□□□□ -0.34
VTI1BP3-201ENST00000550220 CHST13Q8NET6 341 aa12.9□□□□□ -0.34
VTI1BP3-201ENST00000550220 DDX11Q96FC9 970 aa12.9□□□□□ -0.34
VTI1BP3-201ENST00000550220 GDF15Q99988 308 aa12.9□□□□□ -0.34
VTI1BP3-201ENST00000550220 CNPY2Q9Y2B0 182 aa12.9□□□□□ -0.34
VTI1BP3-201ENST00000550220 ORC4O43929 436 aa12.89□□□□□ -0.35
VTI1BP3-201ENST00000550220 PLA2G6O60733 806 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms