RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 EVI5O60447 810 aa19.47■□□□□ 0.71
VPS29-207ENST00000549970 HOXC6P09630 235 aa19.47■□□□□ 0.71
VPS29-207ENST00000549970 TMEM132BQ14DG7 1078 aa19.47■□□□□ 0.71
VPS29-207ENST00000549970 NUP88Q99567 741 aaPredicted RBP19.47■□□□□ 0.71
VPS29-207ENST00000549970 LNPKQ9C0E8 428 aa19.47■□□□□ 0.71
VPS29-207ENST00000549970 NYAP2Q9P242 653 aa19.47■□□□□ 0.71
VPS29-207ENST00000549970 STRNO43815 780 aa19.46■□□□□ 0.71
VPS29-207ENST00000549970 CYP2C19P33261 490 aa19.46■□□□□ 0.71
VPS29-207ENST00000549970 MNX1P50219 401 aaPredicted RBP19.46■□□□□ 0.71
VPS29-207ENST00000549970 PDE4BQ07343 736 aa19.46■□□□□ 0.71
VPS29-207ENST00000549970 PPARAQ07869 468 aa19.46■□□□□ 0.71
VPS29-207ENST00000549970 AAMPQ13685 434 aa19.46■□□□□ 0.71
VPS29-207ENST00000549970 B4GALNT3Q6L9W6 998 aa19.46■□□□□ 0.71
VPS29-207ENST00000549970 CHRDL2Q6WN34 429 aa19.46■□□□□ 0.71
VPS29-207ENST00000549970 NBPF3Q9H094 633 aa19.46■□□□□ 0.71
VPS29-207ENST00000549970 MROH8Q9H579 483 aa19.46■□□□□ 0.71
VPS29-207ENST00000549970 CLIP2Q9UDT6 1046 aa19.46■□□□□ 0.71
VPS29-207ENST00000549970 PPP1R9AQ9ULJ8 1098 aa19.46■□□□□ 0.71
VPS29-207ENST00000549970 MYH4Q9Y623 1939 aa19.46■□□□□ 0.71
VPS29-207ENST00000549970 ZNF236Q9UL36 1845 aa19.46■□□□□ 0.71
VPS29-207ENST00000549970 ALPK3Q96L96 1907 aa19.45■□□□□ 0.7
VPS29-207ENST00000549970 IGKV6D-41A0A0C4DH26 115 aa19.45■□□□□ 0.7
VPS29-207ENST00000549970 F5H6K3 240 aa19.45■□□□□ 0.7
VPS29-207ENST00000549970 SLC3A2P08195 630 aaKnown RBP19.45■□□□□ 0.7
VPS29-207ENST00000549970 KLRC3Q07444 240 aa19.45■□□□□ 0.7
VPS29-207ENST00000549970 EXOC6Q8TAG9 804 aa19.45■□□□□ 0.7
VPS29-207ENST00000549970 CEP95Q96GE4 821 aa19.45■□□□□ 0.7
VPS29-207ENST00000549970 RWDD1Q9H446 243 aaPredicted RBP19.45■□□□□ 0.7
VPS29-207ENST00000549970 C11orf49Q9H6J7 331 aa19.45■□□□□ 0.7
VPS29-207ENST00000549970 ADAMTS5Q9UNA0 930 aa19.45■□□□□ 0.7
VPS29-207ENST00000549970 VWA5AO00534 786 aa19.44■□□□□ 0.7
VPS29-207ENST00000549970 FOXP2O15409 715 aa19.44■□□□□ 0.7
VPS29-207ENST00000549970 COBLO75128 1261 aa19.44■□□□□ 0.7
VPS29-207ENST00000549970 NDUFB10O96000 172 aa19.44■□□□□ 0.7
VPS29-207ENST00000549970 TSPY3P0CV98 308 aa19.44■□□□□ 0.7
VPS29-207ENST00000549970 TSPY8P0CW00 308 aa19.44■□□□□ 0.7
VPS29-207ENST00000549970 CNGA1P29973 690 aa19.44■□□□□ 0.7
VPS29-207ENST00000549970 FAM47AQ5JRC9 791 aa19.44■□□□□ 0.7
VPS29-207ENST00000549970 LHX8Q68G74 356 aa19.44■□□□□ 0.7
VPS29-207ENST00000549970 LRRC47Q8N1G4 583 aaKnown RBP19.44■□□□□ 0.7
VPS29-207ENST00000549970 RANBP2P49792 3224 aaKnown RBP19.43■□□□□ 0.7
VPS29-207ENST00000549970 SLC25A27O95847 323 aa19.43■□□□□ 0.7
VPS29-207ENST00000549970 VPS53Q5VIR6 699 aa19.43■□□□□ 0.7
VPS29-207ENST00000549970 SMC5Q8IY18 1101 aa19.43■□□□□ 0.7
VPS29-207ENST00000549970 SLF1Q9BQI6 1058 aa19.43■□□□□ 0.7
VPS29-207ENST00000549970 MTMR4Q9NYA4 1195 aa19.43■□□□□ 0.7
VPS29-207ENST00000549970 FRMPD3Q5JV73 1810 aa19.43■□□□□ 0.7
VPS29-207ENST00000549970 TRIM6-TRIM34B2RNG4 842 aa19.42■□□□□ 0.7
VPS29-207ENST00000549970 TTLL1O95922 423 aa19.42■□□□□ 0.7
VPS29-207ENST00000549970 FCER1AP12319 257 aa19.42■□□□□ 0.7
VPS29-207ENST00000549970 STAT3P40763 770 aa19.42■□□□□ 0.7
VPS29-207ENST00000549970 TFAP4Q01664 338 aa19.42■□□□□ 0.7
VPS29-207ENST00000549970 OLFML2BQ68BL8 750 aa19.42■□□□□ 0.7
VPS29-207ENST00000549970 RIOX2Q8IUF8 465 aa19.42■□□□□ 0.7
VPS29-207ENST00000549970 ABRAQ8N0Z2 381 aa19.42■□□□□ 0.7
VPS29-207ENST00000549970 TRPV1Q8NER1 839 aa19.42■□□□□ 0.7
VPS29-207ENST00000549970 NEDD1Q8NHV4 660 aa19.42■□□□□ 0.7
VPS29-207ENST00000549970 FAM227BQ96M60 508 aa19.42■□□□□ 0.7
VPS29-207ENST00000549970 HELLSQ9NRZ9 838 aa19.42■□□□□ 0.7
VPS29-207ENST00000549970 SLC5A4Q9NY91 659 aa19.42■□□□□ 0.7
VPS29-207ENST00000549970 DDX20Q9UHI6 824 aaKnown RBP19.42■□□□□ 0.7
VPS29-207ENST00000549970 ZNF214Q9UL59 606 aaPredicted RBP19.42■□□□□ 0.7
VPS29-207ENST00000549970 PLIN4Q96Q06 1357 aa19.42■□□□□ 0.7
VPS29-207ENST00000549970 ZNFX1Q9P2E3 1918 aaKnown RBP19.41■□□□□ 0.7
VPS29-207ENST00000549970 TRIOBPQ9H2D6 2365 aa19.41■□□□□ 0.7
VPS29-207ENST00000549970 A0A0D9SFI3 127 aa19.41■□□□□ 0.7
VPS29-207ENST00000549970 IGHDP01880 384 aa19.41■□□□□ 0.7
VPS29-207ENST00000549970 CTDSPL2Q05D32 466 aa19.41■□□□□ 0.7
VPS29-207ENST00000549970 C7orf61Q8IZ16 206 aa19.41■□□□□ 0.7
VPS29-207ENST00000549970 REPS2Q8NFH8 660 aa19.41■□□□□ 0.7
VPS29-207ENST00000549970 MKL1Q969V6 931 aa19.41■□□□□ 0.7
VPS29-207ENST00000549970 MMP19Q99542 508 aa19.41■□□□□ 0.7
VPS29-207ENST00000549970 PFASO15067 1338 aa19.41■□□□□ 0.7
VPS29-207ENST00000549970 IGHA2P01877 340 aa19.4■□□□□ 0.7
VPS29-207ENST00000549970 CYBAP13498 195 aa19.4■□□□□ 0.7
VPS29-207ENST00000549970 CHD1LQ86WJ1 897 aa19.4■□□□□ 0.7
VPS29-207ENST00000549970 RILPL2Q969X0 211 aa19.4■□□□□ 0.7
VPS29-207ENST00000549970 MAML3Q96JK9 1138 aa19.4■□□□□ 0.7
VPS29-207ENST00000549970 INCENPQ9NQS7 918 aa19.4■□□□□ 0.7
VPS29-207ENST00000549970 RBM27Q9P2N5 1060 aaKnown RBP19.4■□□□□ 0.7
VPS29-207ENST00000549970 MSCO60682 206 aa19.39■□□□□ 0.69
VPS29-207ENST00000549970 PGK2P07205 417 aa19.39■□□□□ 0.69
VPS29-207ENST00000549970 FXR1P51114 621 aaKnown RBP eCLIP19.39■□□□□ 0.69
VPS29-207ENST00000549970 KCTD2Q14681 263 aa19.39■□□□□ 0.69
VPS29-207ENST00000549970 MCMDC2Q4G0Z9 681 aa19.39■□□□□ 0.69
VPS29-207ENST00000549970 PRPF38AQ8NAV1 312 aaKnown RBP19.39■□□□□ 0.69
VPS29-207ENST00000549970 GMCL1P1Q8NEA9 526 aa19.39■□□□□ 0.69
VPS29-207ENST00000549970 KIFC2Q96AC6 838 aa19.39■□□□□ 0.69
VPS29-207ENST00000549970 ISY1Q9ULR0 285 aaKnown RBP19.39■□□□□ 0.69
VPS29-207ENST00000549970 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.39■□□□□ 0.69
VPS29-207ENST00000549970 CTDP1Q9Y5B0 961 aaPredicted RBP19.39■□□□□ 0.69
VPS29-207ENST00000549970 TSPY2A6NKD2 308 aa19.38■□□□□ 0.69
VPS29-207ENST00000549970 COPB2P35606 906 aa19.38■□□□□ 0.69
VPS29-207ENST00000549970 SLC4A3P48751 1232 aa19.38■□□□□ 0.69
VPS29-207ENST00000549970 NUCB1Q02818 461 aa19.38■□□□□ 0.69
VPS29-207ENST00000549970 NMIQ13287 307 aaPredicted RBP19.38■□□□□ 0.69
VPS29-207ENST00000549970 PRAMEF19Q5SWL8 479 aa19.38■□□□□ 0.69
VPS29-207ENST00000549970 ANO1Q5XXA6 986 aa19.38■□□□□ 0.69
VPS29-207ENST00000549970 SLFN13Q68D06 897 aa19.38■□□□□ 0.69
VPS29-207ENST00000549970 SNRNP48Q6IEG0 339 aaKnown RBP19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms