RNA–Protein interactions for RNA: ENST00000547637.1

SMARCD1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, human

TSL 2

Gene SMARCD1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMARCD1-204	ENST00000547637	KCTD2	Q14681	263 aa		27.66	■■■□□ 2.02
SMARCD1-204	ENST00000547637	CLEC10A	Q8IUN9	316 aa		27.66	■■■□□ 2.02
SMARCD1-204	ENST00000547637	MAML3	Q96JK9	1138 aa		27.66	■■■□□ 2.02
SMARCD1-204	ENST00000547637	MMP19	Q99542	508 aa		27.66	■■■□□ 2.02
SMARCD1-204	ENST00000547637	MYH7	P12883	1935 aa		27.66	■■■□□ 2.02
SMARCD1-204	ENST00000547637	RTP1	P59025	263 aa		27.65	■■■□□ 2.02
SMARCD1-204	ENST00000547637	TMEM132B	Q14DG7	1078 aa		27.65	■■■□□ 2.02
SMARCD1-204	ENST00000547637	LRRFIP1	Q32MZ4	808 aa	Known RBP	27.65	■■■□□ 2.02
SMARCD1-204	ENST00000547637	PUS7L	Q9H0K6	701 aa	Known RBP	27.65	■■■□□ 2.02
SMARCD1-204	ENST00000547637	ZNF287	Q9HBT7	754 aa		27.65	■■■□□ 2.02
SMARCD1-204	ENST00000547637	ATP11B	Q9Y2G3	1177 aa		27.65	■■■□□ 2.02
SMARCD1-204	ENST00000547637	STAT3	P40763	770 aa		27.64	■■■□□ 2.02
SMARCD1-204	ENST00000547637	GIMAP6	Q6P9H5	292 aa		27.64	■■■□□ 2.02
SMARCD1-204	ENST00000547637	SLC39A5	Q6ZMH5	540 aa		27.64	■■■□□ 2.02
SMARCD1-204	ENST00000547637	RIOX2	Q8IUF8	465 aa		27.64	■■■□□ 2.02
SMARCD1-204	ENST00000547637	ADAMTS5	Q9UNA0	930 aa		27.64	■■■□□ 2.02
SMARCD1-204	ENST00000547637	DIS3	Q9Y2L1	958 aa	Known RBP	27.64	■■■□□ 2.02
SMARCD1-204	ENST00000547637	RLF	Q13129	1914 aa		27.64	■■■□□ 2.02
SMARCD1-204	ENST00000547637	SBK1	Q52WX2	424 aa		27.63	■■■□□ 2.01
SMARCD1-204	ENST00000547637	PPP1R9A	Q9ULJ8	1098 aa		27.63	■■■□□ 2.01
SMARCD1-204	ENST00000547637	ZNFX1	Q9P2E3	1918 aa	Known RBP	27.63	■■■□□ 2.01
SMARCD1-204	ENST00000547637		A0A0G2JMZ2	1700 aa		27.62	■■■□□ 2.01
SMARCD1-204	ENST00000547637	ZFY	P08048	801 aa	Predicted RBP	27.62	■■■□□ 2.01
SMARCD1-204	ENST00000547637	RARB	P10826	455 aa		27.62	■■■□□ 2.01
SMARCD1-204	ENST00000547637	PRAMEF19	Q5SWL8	479 aa		27.62	■■■□□ 2.01
SMARCD1-204	ENST00000547637	ANO1	Q5XXA6	986 aa		27.62	■■■□□ 2.01
SMARCD1-204	ENST00000547637	STRBP	Q96SI9	672 aa	Known RBP	27.62	■■■□□ 2.01
SMARCD1-204	ENST00000547637	CTDP1	Q9Y5B0	961 aa	Predicted RBP	27.62	■■■□□ 2.01
SMARCD1-204	ENST00000547637	VWA5A	O00534	786 aa		27.61	■■■□□ 2.01
SMARCD1-204	ENST00000547637	SMARCA5	O60264	1052 aa	Predicted RBP	27.61	■■■□□ 2.01
SMARCD1-204	ENST00000547637	GNAT2	P19087	354 aa		27.61	■■■□□ 2.01
SMARCD1-204	ENST00000547637	STXBP5L	Q9Y2K9	1186 aa		27.61	■■■□□ 2.01
SMARCD1-204	ENST00000547637	MINDY4B	A8MYZ0	360 aa		27.6	■■■□□ 2.01
SMARCD1-204	ENST00000547637	FAM83B	Q5T0W9	1011 aa		27.6	■■■□□ 2.01
SMARCD1-204	ENST00000547637		Q7L0L9	218 aa		27.6	■■■□□ 2.01
SMARCD1-204	ENST00000547637	RNF180	Q86T96	592 aa		27.6	■■■□□ 2.01
SMARCD1-204	ENST00000547637	KBTBD3	Q8NAB2	608 aa		27.6	■■■□□ 2.01
SMARCD1-204	ENST00000547637	MTMR10	Q9NXD2	777 aa		27.6	■■■□□ 2.01
SMARCD1-204	ENST00000547637	DLL1	O00548	723 aa		27.59	■■■□□ 2.01
SMARCD1-204	ENST00000547637	LRRC41	Q15345	812 aa		27.59	■■■□□ 2.01
SMARCD1-204	ENST00000547637	ZNF444	Q8N0Y2	327 aa	Predicted RBP	27.59	■■■□□ 2.01
SMARCD1-204	ENST00000547637	APPBP2	Q92624	585 aa		27.59	■■■□□ 2.01
SMARCD1-204	ENST00000547637	SLF1	Q9BQI6	1058 aa		27.59	■■■□□ 2.01
SMARCD1-204	ENST00000547637	TINF2	Q9BSI4	451 aa		27.59	■■■□□ 2.01
SMARCD1-204	ENST00000547637	PRDM5	Q9NQX1	630 aa	Predicted RBP	27.59	■■■□□ 2.01
SMARCD1-204	ENST00000547637	FBXO28	Q9NVF7	368 aa		27.59	■■■□□ 2.01
SMARCD1-204	ENST00000547637	NYAP2	Q9P242	653 aa		27.59	■■■□□ 2.01
SMARCD1-204	ENST00000547637	CNPY2	Q9Y2B0	182 aa		27.59	■■■□□ 2.01
SMARCD1-204	ENST00000547637	CHGB	P05060	677 aa		27.58	■■■□□ 2.01
SMARCD1-204	ENST00000547637	APP	P05067	770 aa		27.58	■■■□□ 2.01
SMARCD1-204	ENST00000547637	ADCYAP1R1	P41586	468 aa		27.58	■■■□□ 2.01
SMARCD1-204	ENST00000547637	XPNPEP3	Q9NQH7	507 aa		27.58	■■■□□ 2.01
SMARCD1-204	ENST00000547637	LAMA3	Q16787	3333 aa		27.58	■■■□□ 2.01
SMARCD1-204	ENST00000547637	SMIM22	K7EJ46	135 aa		27.57	■■■□□ 2
SMARCD1-204	ENST00000547637	RNF113A	O15541	343 aa	Known RBP	27.57	■■■□□ 2
SMARCD1-204	ENST00000547637	PGK2	P07205	417 aa		27.57	■■■□□ 2
SMARCD1-204	ENST00000547637	TDO2	P48775	406 aa		27.57	■■■□□ 2
SMARCD1-204	ENST00000547637	C1orf53	Q5VUE5	145 aa		27.57	■■■□□ 2
SMARCD1-204	ENST00000547637	PRPF38A	Q8NAV1	312 aa	Known RBP	27.57	■■■□□ 2
SMARCD1-204	ENST00000547637	DDX11	Q96FC9	970 aa		27.57	■■■□□ 2
SMARCD1-204	ENST00000547637	GSG1L2	A8MUP6	293 aa		27.56	■■■□□ 2
SMARCD1-204	ENST00000547637	FAM47A	Q5JRC9	791 aa		27.56	■■■□□ 2
SMARCD1-204	ENST00000547637	FAM109B	Q6ICB4	259 aa	Predicted RBP	27.56	■■■□□ 2
SMARCD1-204	ENST00000547637	STK11IP	Q8N1F8	1099 aa		27.56	■■■□□ 2
SMARCD1-204	ENST00000547637	MSL3	Q8N5Y2	521 aa	Known RBP	27.56	■■■□□ 2
SMARCD1-204	ENST00000547637	TEX13B	Q9BXU2	312 aa		27.56	■■■□□ 2
SMARCD1-204	ENST00000547637	DCTPP1	Q9H773	170 aa		27.56	■■■□□ 2
SMARCD1-204	ENST00000547637	ZNF214	Q9UL59	606 aa	Predicted RBP	27.56	■■■□□ 2
SMARCD1-204	ENST00000547637	COL11A1	P12107	1806 aa	Predicted RBP	27.55	■■■□□ 2
SMARCD1-204	ENST00000547637	PARP14	Q460N5	1801 aa		27.55	■■■□□ 2
SMARCD1-204	ENST00000547637		F5H6K3	240 aa		27.55	■■■□□ 2
SMARCD1-204	ENST00000547637	ZBED4	O75132	1171 aa		27.55	■■■□□ 2
SMARCD1-204	ENST00000547637	AKR1A1	P14550	325 aa		27.55	■■■□□ 2
SMARCD1-204	ENST00000547637	RASA1	P20936	1047 aa		27.55	■■■□□ 2
SMARCD1-204	ENST00000547637	KLRC3	Q07444	240 aa		27.55	■■■□□ 2
SMARCD1-204	ENST00000547637	SNX17	Q15036	470 aa		27.55	■■■□□ 2
SMARCD1-204	ENST00000547637	ZNF792	Q3KQV3	632 aa		27.55	■■■□□ 2
SMARCD1-204	ENST00000547637	TRIM60	Q495X7	471 aa		27.55	■■■□□ 2
SMARCD1-204	ENST00000547637	FERMT2	Q96AC1	680 aa		27.55	■■■□□ 2
SMARCD1-204	ENST00000547637	NACAP1	Q9BZK3	213 aa		27.55	■■■□□ 2
SMARCD1-204	ENST00000547637	SMCHD1	A6NHR9	2005 aa		27.55	■■■□□ 2
SMARCD1-204	ENST00000547637	OSBP2	Q969R2	916 aa		27.54	■■■□□ 2
SMARCD1-204	ENST00000547637	CLIP2	Q9UDT6	1046 aa		27.54	■■■□□ 2
SMARCD1-204	ENST00000547637	TACC3	Q9Y6A5	838 aa		27.54	■■■□□ 2
SMARCD1-204	ENST00000547637	ERC2	O15083	957 aa		27.53	■■■□□ 2
SMARCD1-204	ENST00000547637	SLC3A2	P08195	630 aa	Known RBP	27.53	■■■□□ 2
SMARCD1-204	ENST00000547637	C20orf194	Q5TEA3	1177 aa		27.53	■■■□□ 2
SMARCD1-204	ENST00000547637	SNRNP48	Q6IEG0	339 aa	Known RBP	27.53	■■■□□ 2
SMARCD1-204	ENST00000547637	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	27.53	■■■□□ 2
SMARCD1-204	ENST00000547637	SYNPO2	Q9UMS6	1093 aa		27.53	■■■□□ 2
SMARCD1-204	ENST00000547637	PHF24	Q9UPV7	400 aa		27.53	■■■□□ 2
SMARCD1-204	ENST00000547637	GPAA1	O43292	621 aa		27.52	■■■□□ 2
SMARCD1-204	ENST00000547637	ZNF697	Q5TEC3	545 aa		27.52	■■■□□ 2
SMARCD1-204	ENST00000547637	REPS2	Q8NFH8	660 aa		27.52	■■■□□ 2
SMARCD1-204	ENST00000547637	ROBO3	Q96MS0	1386 aa		27.51	■■□□□ 1.99
SMARCD1-204	ENST00000547637	PATL2	C9JE40	543 aa	Known RBP	27.51	■■□□□ 1.99
SMARCD1-204	ENST00000547637	POTEB2	H3BUK9	544 aa		27.51	■■□□□ 1.99
SMARCD1-204	ENST00000547637	NDUFB10	O96000	172 aa		27.51	■■□□□ 1.99
SMARCD1-204	ENST00000547637	SLC4A3	P48751	1232 aa		27.51	■■□□□ 1.99
SMARCD1-204	ENST00000547637	PDE4B	Q07343	736 aa		27.51	■■□□□ 1.99

Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms