RNA–Protein interactions for RNA: ENST00000542685.5

XRCC4-206, Transcript of X-ray repair cross complementing 4, humanhuman

TSL 1 (best)

Gene XRCC4, Length 1,243 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC4-206ENST00000542685 RAP1GAPP47736 663 aa8.16□□□□□ -1.1
XRCC4-206ENST00000542685 TMC3Q7Z5M5 1100 aa8.16□□□□□ -1.1
XRCC4-206ENST00000542685 KIAA0825Q8IV33 1275 aa8.16□□□□□ -1.1
XRCC4-206ENST00000542685 EAF1Q96JC9 268 aaPredicted RBP8.16□□□□□ -1.1
XRCC4-206ENST00000542685 SP110Q9HB58 689 aa8.16□□□□□ -1.1
XRCC4-206ENST00000542685 DCP1AQ9NPI6 582 aaPredicted RBP8.16□□□□□ -1.1
XRCC4-206ENST00000542685 FITM1A5D6W6 292 aa8.15□□□□□ -1.1
XRCC4-206ENST00000542685 CLEC3AO75596 197 aa8.15□□□□□ -1.1
XRCC4-206ENST00000542685 MFAP1P55081 439 aaKnown RBP8.15□□□□□ -1.1
XRCC4-206ENST00000542685 RAD51AP2Q09MP3 1159 aa8.15□□□□□ -1.1
XRCC4-206ENST00000542685 SNW1Q13573 536 aaKnown RBP8.15□□□□□ -1.1
XRCC4-206ENST00000542685 NBPF9Q3BBW0 867 aa8.15□□□□□ -1.1
XRCC4-206ENST00000542685 TIGD5Q53EQ6 642 aa8.15□□□□□ -1.1
XRCC4-206ENST00000542685 FBXO15Q8NCQ5 510 aaPredicted RBP8.15□□□□□ -1.1
XRCC4-206ENST00000542685 BHLHE22Q8NFJ8 381 aaPredicted RBP8.15□□□□□ -1.1
XRCC4-206ENST00000542685 ENOX1Q8TC92 643 aaKnown RBP8.15□□□□□ -1.1
XRCC4-206ENST00000542685 SYTL5Q8TDW5 730 aaPredicted RBP8.15□□□□□ -1.1
XRCC4-206ENST00000542685 PPP1R16BQ96T49 567 aa8.15□□□□□ -1.1
XRCC4-206ENST00000542685 HDAC8Q9BY41 377 aa8.15□□□□□ -1.1
XRCC4-206ENST00000542685 EPB41L4BQ9H329 900 aa8.15□□□□□ -1.1
XRCC4-206ENST00000542685 ARID1BQ8NFD5 2236 aaPredicted RBP8.15□□□□□ -1.1
XRCC4-206ENST00000542685 RPL10P27635 214 aaKnown RBP8.14□□□□□ -1.11
XRCC4-206ENST00000542685 USP48Q86UV5 1035 aa8.14□□□□□ -1.11
XRCC4-206ENST00000542685 SLITRK4Q8IW52 837 aa8.14□□□□□ -1.11
XRCC4-206ENST00000542685 EBF1Q9UH73 591 aa8.14□□□□□ -1.11
XRCC4-206ENST00000542685 SCRIBQ14160 1630 aa8.14□□□□□ -1.11
XRCC4-206ENST00000542685 TSPAN15O95858 294 aa8.13□□□□□ -1.11
XRCC4-206ENST00000542685 NME1P15531 152 aaKnown RBP8.13□□□□□ -1.11
XRCC4-206ENST00000542685 DUSP4Q13115 394 aa8.13□□□□□ -1.11
XRCC4-206ENST00000542685 LRRFIP1Q32MZ4 808 aaKnown RBP8.13□□□□□ -1.11
XRCC4-206ENST00000542685 ZNF394Q53GI3 561 aa8.13□□□□□ -1.11
XRCC4-206ENST00000542685 SPPL2CQ8IUH8 684 aa8.13□□□□□ -1.11
XRCC4-206ENST00000542685 LILRA2Q8N149 483 aa8.13□□□□□ -1.11
XRCC4-206ENST00000542685 USHBP1Q8N6Y0 703 aa8.13□□□□□ -1.11
XRCC4-206ENST00000542685 DAGLBQ8NCG7 672 aa8.13□□□□□ -1.11
XRCC4-206ENST00000542685 TCTN2Q96GX1 697 aa8.13□□□□□ -1.11
XRCC4-206ENST00000542685 FOXP3Q9BZS1 431 aa8.13□□□□□ -1.11
XRCC4-206ENST00000542685 PCDHGB7Q9Y5F8 929 aa8.13□□□□□ -1.11
XRCC4-206ENST00000542685 SSU72P8A0A1W2PR75 194 aa8.12□□□□□ -1.11
XRCC4-206ENST00000542685 FAM86C2PA6NEL3 165 aa8.12□□□□□ -1.11
XRCC4-206ENST00000542685 C1QTNF9P0C862 333 aa8.12□□□□□ -1.11
XRCC4-206ENST00000542685 CCNFP41002 786 aa8.12□□□□□ -1.11
XRCC4-206ENST00000542685 FANCCQ00597 558 aa8.12□□□□□ -1.11
XRCC4-206ENST00000542685 CHRNEQ04844 493 aa8.12□□□□□ -1.11
XRCC4-206ENST00000542685 RNF111Q6ZNA4 994 aa8.12□□□□□ -1.11
XRCC4-206ENST00000542685 WAPLQ7Z5K2 1190 aa8.12□□□□□ -1.11
XRCC4-206ENST00000542685 TMEM192Q8IY95 271 aa8.12□□□□□ -1.11
XRCC4-206ENST00000542685 ZNF655Q8N720 491 aaPredicted RBP8.12□□□□□ -1.11
XRCC4-206ENST00000542685 SLC6A18Q96N87 628 aa8.12□□□□□ -1.11
XRCC4-206ENST00000542685 PRDM14Q9GZV8 571 aa8.12□□□□□ -1.11
XRCC4-206ENST00000542685 MKRN2Q9H000 416 aaKnown RBP8.12□□□□□ -1.11
XRCC4-206ENST00000542685 GPR160Q9UJ42 338 aa8.12□□□□□ -1.11
XRCC4-206ENST00000542685 ZMYM5Q9UJ78 669 aa8.12□□□□□ -1.11
XRCC4-206ENST00000542685 TCFL5Q9UL49 500 aa8.12□□□□□ -1.11
XRCC4-206ENST00000542685 MINPP1Q9UNW1 487 aa8.12□□□□□ -1.11
XRCC4-206ENST00000542685 MEIS3P2A8K0S8 358 aa8.11□□□□□ -1.11
XRCC4-206ENST00000542685 NFIBO00712 420 aa8.11□□□□□ -1.11
XRCC4-206ENST00000542685 FKTNO75072 461 aa8.11□□□□□ -1.11
XRCC4-206ENST00000542685 PRAMEF1O95521 474 aa8.11□□□□□ -1.11
XRCC4-206ENST00000542685 PCBP3P57721 371 aaKnown RBP8.11□□□□□ -1.11
XRCC4-206ENST00000542685 NR0B2Q15466 257 aa8.11□□□□□ -1.11
XRCC4-206ENST00000542685 ANKS4BQ8N8V4 417 aa8.11□□□□□ -1.11
XRCC4-206ENST00000542685 SYPP08247 313 aa8.1□□□□□ -1.11
XRCC4-206ENST00000542685 TMEM253P0C7T8 217 aa8.1□□□□□ -1.11
XRCC4-206ENST00000542685 GALK1P51570 392 aa8.1□□□□□ -1.11
XRCC4-206ENST00000542685 ANKLE2Q86XL3 938 aa8.1□□□□□ -1.11
XRCC4-206ENST00000542685 LINC01599Q8WXQ3 324 aa8.1□□□□□ -1.11
XRCC4-206ENST00000542685 PKNOX2Q96KN3 472 aa8.1□□□□□ -1.11
XRCC4-206ENST00000542685 SLC9A7Q96T83 725 aa8.1□□□□□ -1.11
XRCC4-206ENST00000542685 CWC22Q9HCG8 908 aaKnown RBP8.1□□□□□ -1.11
XRCC4-206ENST00000542685 FBXL21Q9UKT6 434 aa8.1□□□□□ -1.11
XRCC4-206ENST00000542685 ZNF281Q9Y2X9 895 aa8.1□□□□□ -1.11
XRCC4-206ENST00000542685 KRTAP4-8A0A0G2JLE6 195 aa8.09□□□□□ -1.11
XRCC4-206ENST00000542685 MEIS1O00470 390 aa8.09□□□□□ -1.11
XRCC4-206ENST00000542685 TNFRSF10CO14798 259 aa8.09□□□□□ -1.11
XRCC4-206ENST00000542685 SIGLEC6O43699 453 aa8.09□□□□□ -1.11
XRCC4-206ENST00000542685 PSPNO60542 156 aa8.09□□□□□ -1.11
XRCC4-206ENST00000542685 KRT1P04264 644 aa8.09□□□□□ -1.11
XRCC4-206ENST00000542685 G6PC3Q9BUM1 346 aa8.09□□□□□ -1.11
XRCC4-206ENST00000542685 SLC6A17Q9H1V8 727 aa8.09□□□□□ -1.11
XRCC4-206ENST00000542685 METTL5Q9NRN9 209 aaKnown RBP8.09□□□□□ -1.11
XRCC4-206ENST00000542685 YBX2Q9Y2T7 364 aaKnown RBP8.09□□□□□ -1.11
XRCC4-206ENST00000542685 EEA1Q15075 1411 aa8.09□□□□□ -1.11
XRCC4-206ENST00000542685 USP2O75604 605 aaPredicted RBP8.08□□□□□ -1.12
XRCC4-206ENST00000542685 PDE6BP35913 854 aa8.08□□□□□ -1.12
XRCC4-206ENST00000542685 FBXW10Q5XX13 1052 aa8.08□□□□□ -1.12
XRCC4-206ENST00000542685 ZPBP2Q6X784 338 aa8.08□□□□□ -1.12
XRCC4-206ENST00000542685 ZNF605Q86T29 641 aa8.08□□□□□ -1.12
XRCC4-206ENST00000542685 SIRT2Q8IXJ6 389 aa8.08□□□□□ -1.12
XRCC4-206ENST00000542685 LINC00116Q8NCU8 138 aa8.08□□□□□ -1.12
XRCC4-206ENST00000542685 KCNN1Q92952 543 aa8.08□□□□□ -1.12
XRCC4-206ENST00000542685 RNF34Q969K3 372 aa8.08□□□□□ -1.12
XRCC4-206ENST00000542685 INTS4Q96HW7 963 aaKnown RBP8.08□□□□□ -1.12
XRCC4-206ENST00000542685 TOX2Q96NM4 488 aa8.08□□□□□ -1.12
XRCC4-206ENST00000542685 FERD3LQ96RJ6 166 aa8.08□□□□□ -1.12
XRCC4-206ENST00000542685 CHST7Q9NS84 486 aa8.08□□□□□ -1.12
XRCC4-206ENST00000542685 GFOD1Q9NXC2 390 aa8.08□□□□□ -1.12
XRCC4-206ENST00000542685 ZNRF3Q9ULT6 936 aa8.08□□□□□ -1.12
XRCC4-206ENST00000542685 FANCIQ9NVI1 1328 aa8.07□□□□□ -1.12
XRCC4-206ENST00000542685 TMEM82A0PJX8 343 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms