RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 NOL7Q9UMY1 257 aaKnown RBP16.63■□□□□ 0.25
CLIP1-216ENST00000541410 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.63■□□□□ 0.25
CLIP1-216ENST00000541410 BECN2A8MW95 431 aa16.63■□□□□ 0.25
CLIP1-216ENST00000541410 GOLGA6L19H0YKK7 550 aa16.63■□□□□ 0.25
CLIP1-216ENST00000541410 DPEP1P16444 411 aa16.63■□□□□ 0.25
CLIP1-216ENST00000541410 KIAA2012Q0VF49 1180 aa16.63■□□□□ 0.25
CLIP1-216ENST00000541410 PTGDRQ13258 359 aa16.63■□□□□ 0.25
CLIP1-216ENST00000541410 BLIDQ8IZY5 108 aa16.63■□□□□ 0.25
CLIP1-216ENST00000541410 RAD17O75943 681 aa16.62■□□□□ 0.25
CLIP1-216ENST00000541410 CLCN1P35523 988 aa16.62■□□□□ 0.25
CLIP1-216ENST00000541410 GNAQP50148 359 aa16.62■□□□□ 0.25
CLIP1-216ENST00000541410 KRBA2Q6ZNG9 492 aa16.62■□□□□ 0.25
CLIP1-216ENST00000541410 FOXP4Q8IVH2 680 aaPredicted RBP16.62■□□□□ 0.25
CLIP1-216ENST00000541410 PIGSQ96S52 555 aa16.62■□□□□ 0.25
CLIP1-216ENST00000541410 DNAJC18Q9H819 358 aa16.62■□□□□ 0.25
CLIP1-216ENST00000541410 GPCPD1Q9NPB8 672 aa16.62■□□□□ 0.25
CLIP1-216ENST00000541410 ZNF277Q9NRM2 450 aaPredicted RBP16.62■□□□□ 0.25
CLIP1-216ENST00000541410 SERTAD1Q9UHV2 236 aa16.62■□□□□ 0.25
CLIP1-216ENST00000541410 CEP131Q9UPN4 1083 aa16.62■□□□□ 0.25
CLIP1-216ENST00000541410 SRPRBQ9Y5M8 271 aaKnown RBP16.62■□□□□ 0.25
CLIP1-216ENST00000541410 VWA3AA6NCI4 1184 aa16.62■□□□□ 0.25
CLIP1-216ENST00000541410 CEP57L1Q8IYX8 460 aa16.62■□□□□ 0.25
CLIP1-216ENST00000541410 FAM198AQ9UFP1 575 aa16.62■□□□□ 0.25
CLIP1-216ENST00000541410 ZKSCAN5Q9Y2L8 839 aa16.62■□□□□ 0.25
CLIP1-216ENST00000541410 ZNF646O15015 1829 aaPredicted RBP16.61■□□□□ 0.25
CLIP1-216ENST00000541410 A0A087X0B3 334 aa16.61■□□□□ 0.25
CLIP1-216ENST00000541410 STXBP3O00186 592 aa16.61■□□□□ 0.25
CLIP1-216ENST00000541410 ZBTB7AO95365 584 aa16.61■□□□□ 0.25
CLIP1-216ENST00000541410 HLA-DOAP06340 250 aa16.61■□□□□ 0.25
CLIP1-216ENST00000541410 PDHBP11177 359 aa16.61■□□□□ 0.25
CLIP1-216ENST00000541410 HS1BP3Q53T59 392 aa16.61■□□□□ 0.25
CLIP1-216ENST00000541410 TTLL6Q8N841 843 aa16.61■□□□□ 0.25
CLIP1-216ENST00000541410 FAM13BQ9NYF5 915 aa16.61■□□□□ 0.25
CLIP1-216ENST00000541410 MYH4Q9Y623 1939 aa16.61■□□□□ 0.25
CLIP1-216ENST00000541410 PRR29P0C7W0 189 aa16.6■□□□□ 0.25
CLIP1-216ENST00000541410 SH3BP5LQ7L8J4 393 aa16.6■□□□□ 0.25
CLIP1-216ENST00000541410 DRC7Q8IY82 874 aa16.6■□□□□ 0.25
CLIP1-216ENST00000541410 PCDHA4Q9UN74 947 aa16.6■□□□□ 0.25
CLIP1-216ENST00000541410 FAM237AA0A1B0GTK4 181 aa16.6■□□□□ 0.25
CLIP1-216ENST00000541410 INF2Q27J81 1249 aa16.6■□□□□ 0.25
CLIP1-216ENST00000541410 DHX58Q96C10 678 aa16.6■□□□□ 0.25
CLIP1-216ENST00000541410 PRMT6Q96LA8 375 aaPredicted RBP16.6■□□□□ 0.25
CLIP1-216ENST00000541410 TIGD1Q96MW7 591 aa16.6■□□□□ 0.25
CLIP1-216ENST00000541410 NRBP1Q9UHY1 535 aa16.6■□□□□ 0.25
CLIP1-216ENST00000541410 ZBTB12Q9Y330 459 aaPredicted RBP16.6■□□□□ 0.25
CLIP1-216ENST00000541410 PCDHA5Q9Y5H7 936 aa16.6■□□□□ 0.25
CLIP1-216ENST00000541410 KCNA3P22001 575 aa16.59■□□□□ 0.25
CLIP1-216ENST00000541410 CASP1P29466 404 aa16.59■□□□□ 0.25
CLIP1-216ENST00000541410 CDC25AP30304 524 aa16.59■□□□□ 0.25
CLIP1-216ENST00000541410 NAPAP54920 295 aa16.59■□□□□ 0.25
CLIP1-216ENST00000541410 TTBK2Q6IQ55 1244 aa16.59■□□□□ 0.25
CLIP1-216ENST00000541410 SYMPKQ92797 1274 aaKnown RBP16.59■□□□□ 0.25
CLIP1-216ENST00000541410 BARHL2Q9NY43 387 aa16.59■□□□□ 0.25
CLIP1-216ENST00000541410 PPP1R1BQ9UD71 204 aaPredicted RBP16.59■□□□□ 0.25
CLIP1-216ENST00000541410 PCDHA6Q9UN73 950 aa16.59■□□□□ 0.25
CLIP1-216ENST00000541410 PCDHA8Q9Y5H6 950 aa16.59■□□□□ 0.25
CLIP1-216ENST00000541410 SIPA1L1O43166 1804 aa16.59■□□□□ 0.25
CLIP1-216ENST00000541410 CALML3P27482 149 aa16.59■□□□□ 0.25
CLIP1-216ENST00000541410 SLC16A2P36021 539 aa16.59■□□□□ 0.25
CLIP1-216ENST00000541410 CFAP100Q494V2 611 aa16.59■□□□□ 0.25
CLIP1-216ENST00000541410 C17orf53Q8N3J3 647 aaPredicted RBP16.59■□□□□ 0.25
CLIP1-216ENST00000541410 ATF5Q9Y2D1 282 aaPredicted RBP16.59■□□□□ 0.25
CLIP1-216ENST00000541410 CCDC194A0A1B0GVG4 234 aa16.58■□□□□ 0.25
CLIP1-216ENST00000541410 TTLL1O95922 423 aa16.58■□□□□ 0.25
CLIP1-216ENST00000541410 NT5C2P49902 561 aa16.58■□□□□ 0.25
CLIP1-216ENST00000541410 ZNF75DP51815 510 aa16.58■□□□□ 0.25
CLIP1-216ENST00000541410 NLRP12P59046 1061 aa16.58■□□□□ 0.25
CLIP1-216ENST00000541410 IL17AQ16552 155 aa16.58■□□□□ 0.25
CLIP1-216ENST00000541410 KCTD1Q719H9 257 aa16.58■□□□□ 0.25
CLIP1-216ENST00000541410 STAMQ92783 540 aa16.58■□□□□ 0.25
CLIP1-216ENST00000541410 RRP36Q96EU6 259 aaKnown RBP16.58■□□□□ 0.25
CLIP1-216ENST00000541410 IGKV6D-41A0A0C4DH26 115 aa16.58■□□□□ 0.24
CLIP1-216ENST00000541410 CLRN2A0PK11 232 aa16.58■□□□□ 0.24
CLIP1-216ENST00000541410 GDF11O95390 407 aa16.58■□□□□ 0.24
CLIP1-216ENST00000541410 AFMP43652 599 aa16.58■□□□□ 0.24
CLIP1-216ENST00000541410 LARGE2Q8N3Y3 721 aa16.58■□□□□ 0.24
CLIP1-216ENST00000541410 COA7Q96BR5 231 aa16.58■□□□□ 0.24
CLIP1-216ENST00000541410 SPZ1Q9BXG8 430 aa16.58■□□□□ 0.24
CLIP1-216ENST00000541410 SEC63Q9UGP8 760 aaKnown RBP16.58■□□□□ 0.24
CLIP1-216ENST00000541410 SWAP70Q9UH65 585 aa16.58■□□□□ 0.24
CLIP1-216ENST00000541410 CAVIN2O95810 425 aa16.57■□□□□ 0.24
CLIP1-216ENST00000541410 ATP2C1P98194 919 aaPredicted RBP16.57■□□□□ 0.24
CLIP1-216ENST00000541410 NAT10Q9H0A0 1025 aaKnown RBP16.57■□□□□ 0.24
CLIP1-216ENST00000541410 SH3GLB2Q9NR46 395 aa16.57■□□□□ 0.24
CLIP1-216ENST00000541410 COL4A5P29400 1685 aa16.57■□□□□ 0.24
CLIP1-216ENST00000541410 SMCO2A6NFE2 343 aa16.57■□□□□ 0.24
CLIP1-216ENST00000541410 PSMD14O00487 310 aa16.57■□□□□ 0.24
CLIP1-216ENST00000541410 PTGS1P23219 599 aa16.57■□□□□ 0.24
CLIP1-216ENST00000541410 NOVP48745 357 aa16.57■□□□□ 0.24
CLIP1-216ENST00000541410 MDM2Q00987 491 aaPredicted RBP16.57■□□□□ 0.24
CLIP1-216ENST00000541410 POSTNQ15063 836 aa16.57■□□□□ 0.24
CLIP1-216ENST00000541410 PLA2G4DQ86XP0 818 aa16.57■□□□□ 0.24
CLIP1-216ENST00000541410 ZNF579Q8NAF0 562 aaKnown RBP16.57■□□□□ 0.24
CLIP1-216ENST00000541410 TUBE1Q9UJT0 475 aa16.57■□□□□ 0.24
CLIP1-216ENST00000541410 SERPINA10Q9UK55 444 aa16.57■□□□□ 0.24
CLIP1-216ENST00000541410 C10orf71Q711Q0 1435 aa16.57■□□□□ 0.24
CLIP1-216ENST00000541410 PLIN4Q96Q06 1357 aa16.56■□□□□ 0.24
CLIP1-216ENST00000541410 TCP10L2B9ZVM9 353 aa16.56■□□□□ 0.24
CLIP1-216ENST00000541410 M0R2N6 131 aa16.56■□□□□ 0.24
CLIP1-216ENST00000541410 ACTN4O43707 911 aaKnown RBP16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms