RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 TAL1P17542 331 aaPredicted RBP8.85□□□□□ -0.99
YBX3-209ENST00000540747 ICA1Q05084 483 aa8.85□□□□□ -0.99
YBX3-209ENST00000540747 TTF1Q15361 905 aaPredicted RBP8.85□□□□□ -0.99
YBX3-209ENST00000540747 CCSAPQ6IQ19 270 aaPredicted RBP8.85□□□□□ -0.99
YBX3-209ENST00000540747 ANKRD33Q7Z3H0 272 aa8.85□□□□□ -0.99
YBX3-209ENST00000540747 ERC1Q8IUD2 1116 aa8.85□□□□□ -0.99
YBX3-209ENST00000540747 RIOX2Q8IUF8 465 aa8.85□□□□□ -0.99
YBX3-209ENST00000540747 FERMT2Q96AC1 680 aa8.85□□□□□ -0.99
YBX3-209ENST00000540747 DYNLL2Q96FJ2 89 aa8.85□□□□□ -0.99
YBX3-209ENST00000540747 PRDM5Q9NQX1 630 aaPredicted RBP8.85□□□□□ -0.99
YBX3-209ENST00000540747 SLC5A4Q9NY91 659 aa8.85□□□□□ -0.99
YBX3-209ENST00000540747 ZNF214Q9UL59 606 aaPredicted RBP8.85□□□□□ -0.99
YBX3-209ENST00000540747 DIS3Q9Y2L1 958 aaKnown RBP8.85□□□□□ -0.99
YBX3-209ENST00000540747 GREB1LQ9C091 1923 aaPredicted RBP8.85□□□□□ -0.99
YBX3-209ENST00000540747 A0A1W2PQ45 241 aaPredicted RBP8.84□□□□□ -0.99
YBX3-209ENST00000540747 A0A1W2PQY0 241 aa8.84□□□□□ -0.99
YBX3-209ENST00000540747 MPHOSPH10O00566 681 aaKnown RBP8.84□□□□□ -0.99
YBX3-209ENST00000540747 PRKAB2O43741 272 aa8.84□□□□□ -0.99
YBX3-209ENST00000540747 CLTBP09497 229 aa8.84□□□□□ -0.99
YBX3-209ENST00000540747 FCER1AP12319 257 aa8.84□□□□□ -0.99
YBX3-209ENST00000540747 C12orf60Q5U649 245 aa8.84□□□□□ -0.99
YBX3-209ENST00000540747 RASIP1Q5U651 963 aa8.84□□□□□ -0.99
YBX3-209ENST00000540747 C16orf86Q6ZW13 317 aa8.84□□□□□ -0.99
YBX3-209ENST00000540747 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.84□□□□□ -0.99
YBX3-209ENST00000540747 NCAPG2Q86XI2 1143 aa8.84□□□□□ -0.99
YBX3-209ENST00000540747 ITPRIPQ8IWB1 547 aa8.84□□□□□ -0.99
YBX3-209ENST00000540747 SPICE1Q8N0Z3 855 aa8.84□□□□□ -0.99
YBX3-209ENST00000540747 USP38Q8NB14 1042 aa8.84□□□□□ -0.99
YBX3-209ENST00000540747 KLHDC9Q8NEP7 349 aa8.84□□□□□ -0.99
YBX3-209ENST00000540747 RHPN1Q8TCX5 695 aa8.84□□□□□ -0.99
YBX3-209ENST00000540747 TOX2Q96NM4 488 aa8.84□□□□□ -0.99
YBX3-209ENST00000540747 TINF2Q9BSI4 451 aa8.84□□□□□ -0.99
YBX3-209ENST00000540747 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.84□□□□□ -0.99
YBX3-209ENST00000540747 IL1RAPL2Q9NP60 686 aa8.84□□□□□ -0.99
YBX3-209ENST00000540747 XPNPEP3Q9NQH7 507 aa8.84□□□□□ -0.99
YBX3-209ENST00000540747 PRDM6Q9NQX0 595 aa8.84□□□□□ -0.99
YBX3-209ENST00000540747 ATP8A2Q9NTI2 1148 aa8.84□□□□□ -0.99
YBX3-209ENST00000540747 FBXO28Q9NVF7 368 aa8.84□□□□□ -0.99
YBX3-209ENST00000540747 TBX21Q9UL17 535 aa8.84□□□□□ -0.99
YBX3-209ENST00000540747 PPP1R9AQ9ULJ8 1098 aa8.84□□□□□ -0.99
YBX3-209ENST00000540747 TACC3Q9Y6A5 838 aa8.84□□□□□ -0.99
YBX3-209ENST00000540747 TRANK1O15050 2925 aa8.84□□□□□ -0.99
YBX3-209ENST00000540747 COL11A1P12107 1806 aaPredicted RBP8.83□□□□□ -1
YBX3-209ENST00000540747 DNAJC25-GNG10A0A024R161 153 aa8.83□□□□□ -1
YBX3-209ENST00000540747 CYP2D7A0A087X1C5 515 aa8.83□□□□□ -1
YBX3-209ENST00000540747 GOLIM4O00461 696 aa8.83□□□□□ -1
YBX3-209ENST00000540747 VWA5AO00534 786 aa8.83□□□□□ -1
YBX3-209ENST00000540747 PGK1P00558 417 aa8.83□□□□□ -1
YBX3-209ENST00000540747 PGK2P07205 417 aa8.83□□□□□ -1
YBX3-209ENST00000540747 RARBP10826 455 aa8.83□□□□□ -1
YBX3-209ENST00000540747 FOSL2P15408 326 aa8.83□□□□□ -1
YBX3-209ENST00000540747 ADD2P35612 726 aa8.83□□□□□ -1
YBX3-209ENST00000540747 CDK8P49336 464 aa8.83□□□□□ -1
YBX3-209ENST00000540747 FAAP100Q0VG06 881 aa8.83□□□□□ -1
YBX3-209ENST00000540747 SLFNL1Q499Z3 407 aa8.83□□□□□ -1
YBX3-209ENST00000540747 SIRT2Q8IXJ6 389 aa8.83□□□□□ -1
YBX3-209ENST00000540747 LENG1Q96BZ8 264 aaPredicted RBP8.83□□□□□ -1
YBX3-209ENST00000540747 RNPC3Q96LT9 517 aaKnown RBP8.83□□□□□ -1
YBX3-209ENST00000540747 CCDC17Q96LX7 622 aa8.83□□□□□ -1
YBX3-209ENST00000540747 FGD4Q96M96 766 aa8.83□□□□□ -1
YBX3-209ENST00000540747 MMP19Q99542 508 aa8.83□□□□□ -1
YBX3-209ENST00000540747 TSEN34Q9BSV6 310 aaKnown RBP8.83□□□□□ -1
YBX3-209ENST00000540747 SH2D4AQ9H788 454 aa8.83□□□□□ -1
YBX3-209ENST00000540747 ARMT1Q9H993 441 aa8.83□□□□□ -1
YBX3-209ENST00000540747 ARHGEF10LQ9HCE6 1279 aa8.83□□□□□ -1
YBX3-209ENST00000540747 ZNFX1Q9P2E3 1918 aaKnown RBP8.83□□□□□ -1
YBX3-209ENST00000540747 SYNRGQ9UMZ2 1314 aa8.82□□□□□ -1
YBX3-209ENST00000540747 REV3LO60673 3130 aa8.82□□□□□ -1
YBX3-209ENST00000540747 MBD4O95243 580 aa8.82□□□□□ -1
YBX3-209ENST00000540747 SNAI1O95863 264 aaPredicted RBP8.82□□□□□ -1
YBX3-209ENST00000540747 CHGBP05060 677 aa8.82□□□□□ -1
YBX3-209ENST00000540747 EEF2P13639 858 aaKnown RBP8.82□□□□□ -1
YBX3-209ENST00000540747 AKR1A1P14550 325 aa8.82□□□□□ -1
YBX3-209ENST00000540747 CST5P28325 142 aaPredicted RBP8.82□□□□□ -1
YBX3-209ENST00000540747 COPB2P35606 906 aa8.82□□□□□ -1
YBX3-209ENST00000540747 STAT3P40763 770 aa8.82□□□□□ -1
YBX3-209ENST00000540747 CDK7P50613 346 aa8.82□□□□□ -1
YBX3-209ENST00000540747 ACLYP53396 1101 aa8.82□□□□□ -1
YBX3-209ENST00000540747 FPGSQ05932 587 aa8.82□□□□□ -1
YBX3-209ENST00000540747 PLS1Q14651 629 aa8.82□□□□□ -1
YBX3-209ENST00000540747 GRIN2CQ14957 1233 aa8.82□□□□□ -1
YBX3-209ENST00000540747 HSP90AB4PQ58FF6 505 aa8.82□□□□□ -1
YBX3-209ENST00000540747 MAMDC4Q6UXC1 1216 aa8.82□□□□□ -1
YBX3-209ENST00000540747 C16orf59Q7L2K0 433 aa8.82□□□□□ -1
YBX3-209ENST00000540747 RNF180Q86T96 592 aa8.82□□□□□ -1
YBX3-209ENST00000540747 FTSJ3Q8IY81 847 aaKnown RBP8.82□□□□□ -1
YBX3-209ENST00000540747 MSL3Q8N5Y2 521 aaKnown RBP8.82□□□□□ -1
YBX3-209ENST00000540747 PLXNA1Q9UIW2 1896 aa8.82□□□□□ -1
YBX3-209ENST00000540747 BAZ2AQ9UIF9 1905 aaKnown RBP8.82□□□□□ -1
YBX3-209ENST00000540747 SYNGAP1Q96PV0 1343 aa8.81□□□□□ -1
YBX3-209ENST00000540747 MYADML2A6NDP7 307 aa8.81□□□□□ -1
YBX3-209ENST00000540747 MOXD2PA6NHM9 499 aa8.81□□□□□ -1
YBX3-209ENST00000540747 USP17L12C9JPN9 530 aa8.81□□□□□ -1
YBX3-209ENST00000540747 USP17L21D6R901 530 aa8.81□□□□□ -1
YBX3-209ENST00000540747 ATP2A1O14983 1001 aa8.81□□□□□ -1
YBX3-209ENST00000540747 CTAGE5O15320 804 aa8.81□□□□□ -1
YBX3-209ENST00000540747 ADCY6O43306 1168 aa8.81□□□□□ -1
YBX3-209ENST00000540747 PQBP1O60828 265 aaKnown RBP8.81□□□□□ -1
YBX3-209ENST00000540747 ATP5JP18859 108 aa8.81□□□□□ -1
YBX3-209ENST00000540747 DNAJB2P25686 324 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms