RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 PARP10Q53GL7 1025 aa10.64□□□□□ -0.71
CTNNA1-243ENST00000540387 ANKRD23Q86SG2 305 aa10.64□□□□□ -0.71
CTNNA1-243ENST00000540387 FUKQ8N0W3 1084 aa10.64□□□□□ -0.71
CTNNA1-243ENST00000540387 PIK3R5Q8WYR1 880 aa10.64□□□□□ -0.71
CTNNA1-243ENST00000540387 CCDC85AQ96PX6 553 aaPredicted RBP10.64□□□□□ -0.71
CTNNA1-243ENST00000540387 PA2G4Q9UQ80 394 aaKnown RBP10.64□□□□□ -0.71
CTNNA1-243ENST00000540387 N4BP2Q86UW6 1770 aaPredicted RBP10.64□□□□□ -0.71
CTNNA1-243ENST00000540387 GOLGA6BA6NDN3 693 aa10.64□□□□□ -0.71
CTNNA1-243ENST00000540387 IRS4O14654 1257 aaPredicted RBP10.64□□□□□ -0.71
CTNNA1-243ENST00000540387 SURF6O75683 361 aaKnown RBP10.64□□□□□ -0.71
CTNNA1-243ENST00000540387 SLC3A2P08195 630 aaKnown RBP10.64□□□□□ -0.71
CTNNA1-243ENST00000540387 HMGB2P26583 209 aaKnown RBP10.64□□□□□ -0.71
CTNNA1-243ENST00000540387 NDUFA8P51970 172 aa10.64□□□□□ -0.71
CTNNA1-243ENST00000540387 USP14P54578 494 aa10.64□□□□□ -0.71
CTNNA1-243ENST00000540387 TOB2Q14106 344 aaPredicted RBP10.64□□□□□ -0.71
CTNNA1-243ENST00000540387 ANKRD1Q15327 319 aa10.64□□□□□ -0.71
CTNNA1-243ENST00000540387 RABL6Q3YEC7 729 aaPredicted RBP10.64□□□□□ -0.71
CTNNA1-243ENST00000540387 ACCSLQ4AC99 568 aa10.64□□□□□ -0.71
CTNNA1-243ENST00000540387 FILIP1LQ4L180 1135 aa10.64□□□□□ -0.71
CTNNA1-243ENST00000540387 CAPRIN2Q6IMN6 1127 aaKnown RBP10.64□□□□□ -0.71
CTNNA1-243ENST00000540387 COL23A1Q86Y22 540 aaPredicted RBP10.64□□□□□ -0.71
CTNNA1-243ENST00000540387 SLC35F6Q8N357 371 aa10.64□□□□□ -0.71
CTNNA1-243ENST00000540387 KLHDC4Q8TBB5 520 aa10.64□□□□□ -0.71
CTNNA1-243ENST00000540387 HOOK2Q96ED9 719 aa10.64□□□□□ -0.71
CTNNA1-243ENST00000540387 GYS1P13807 737 aa10.63□□□□□ -0.71
CTNNA1-243ENST00000540387 MCM3P25205 808 aa10.63□□□□□ -0.71
CTNNA1-243ENST00000540387 SKOR1P84550 965 aa10.63□□□□□ -0.71
CTNNA1-243ENST00000540387 CREB3L3Q68CJ9 461 aa10.63□□□□□ -0.71
CTNNA1-243ENST00000540387 SMARCC2Q8TAQ2 1214 aa10.63□□□□□ -0.71
CTNNA1-243ENST00000540387 CCDC114Q96M63 670 aa10.63□□□□□ -0.71
CTNNA1-243ENST00000540387 SETDB2Q96T68 719 aa10.63□□□□□ -0.71
CTNNA1-243ENST00000540387 NUP98P52948 1817 aa10.63□□□□□ -0.71
CTNNA1-243ENST00000540387 SOWAHDA6NJG2 315 aa10.63□□□□□ -0.71
CTNNA1-243ENST00000540387 NTSR2O95665 410 aa10.63□□□□□ -0.71
CTNNA1-243ENST00000540387 NAA35Q5VZE5 725 aa10.63□□□□□ -0.71
CTNNA1-243ENST00000540387 NCAPH2Q6IBW4 605 aa10.63□□□□□ -0.71
CTNNA1-243ENST00000540387 TCP11Q8WWU5 503 aa10.63□□□□□ -0.71
CTNNA1-243ENST00000540387 SELENOOQ9BVL4 669 aa10.63□□□□□ -0.71
CTNNA1-243ENST00000540387 PCDHA7Q9UN72 937 aa10.63□□□□□ -0.71
CTNNA1-243ENST00000540387 RBM8AQ9Y5S9 174 aaKnown RBP10.63□□□□□ -0.71
CTNNA1-243ENST00000540387 ADGRG1Q9Y653 693 aa10.63□□□□□ -0.71
CTNNA1-243ENST00000540387 TNS1Q9HBL0 1735 aaKnown RBP10.63□□□□□ -0.71
CTNNA1-243ENST00000540387 SH3TC1Q8TE82 1336 aa10.63□□□□□ -0.71
CTNNA1-243ENST00000540387 RGL2O15211 777 aa10.62□□□□□ -0.71
CTNNA1-243ENST00000540387 PPFIA2O75334 1257 aa10.62□□□□□ -0.71
CTNNA1-243ENST00000540387 RTN3O95197 1032 aaPredicted RBP10.62□□□□□ -0.71
CTNNA1-243ENST00000540387 PSMA5P28066 241 aa10.62□□□□□ -0.71
CTNNA1-243ENST00000540387 MYL5Q02045 173 aa10.62□□□□□ -0.71
CTNNA1-243ENST00000540387 NFIXQ14938 502 aa10.62□□□□□ -0.71
CTNNA1-243ENST00000540387 CCDC181Q5TID7 509 aa10.62□□□□□ -0.71
CTNNA1-243ENST00000540387 MIS18BP1Q6P0N0 1132 aa10.62□□□□□ -0.71
CTNNA1-243ENST00000540387 BLOC1S2Q6QNY1 142 aa10.62□□□□□ -0.71
CTNNA1-243ENST00000540387 BZW1Q7L1Q6 419 aaKnown RBP10.62□□□□□ -0.71
CTNNA1-243ENST00000540387 GSPT2Q8IYD1 628 aaKnown RBP10.62□□□□□ -0.71
CTNNA1-243ENST00000540387 RUFY2Q8WXA3 655 aa10.62□□□□□ -0.71
CTNNA1-243ENST00000540387 NAPGQ99747 312 aaPredicted RBP10.62□□□□□ -0.71
CTNNA1-243ENST00000540387 TMX4Q9H1E5 349 aaPredicted RBP10.62□□□□□ -0.71
CTNNA1-243ENST00000540387 CHCHD3Q9NX63 227 aaKnown RBP10.62□□□□□ -0.71
CTNNA1-243ENST00000540387 RTEL1Q9NZ71 1219 aa10.62□□□□□ -0.71
CTNNA1-243ENST00000540387 LMCD1Q9NZU5 365 aa10.62□□□□□ -0.71
CTNNA1-243ENST00000540387 GOLGA6L7A0A1B0GV03 622 aa10.62□□□□□ -0.71
CTNNA1-243ENST00000540387 A6NNZ2 444 aa10.62□□□□□ -0.71
CTNNA1-243ENST00000540387 GOLGA8KD6RF30 607 aa10.62□□□□□ -0.71
CTNNA1-243ENST00000540387 ZEB2O60315 1214 aa10.62□□□□□ -0.71
CTNNA1-243ENST00000540387 NEFHP12036 1026 aa10.62□□□□□ -0.71
CTNNA1-243ENST00000540387 FOSBP53539 338 aa10.62□□□□□ -0.71
CTNNA1-243ENST00000540387 IFT88Q13099 833 aa10.62□□□□□ -0.71
CTNNA1-243ENST00000540387 DRP2Q13474 957 aa10.62□□□□□ -0.71
CTNNA1-243ENST00000540387 SLC15A2Q16348 729 aa10.62□□□□□ -0.71
CTNNA1-243ENST00000540387 TUBB8Q3ZCM7 444 aa10.62□□□□□ -0.71
CTNNA1-243ENST00000540387 CCDC24Q8N4L8 307 aa10.62□□□□□ -0.71
CTNNA1-243ENST00000540387 PLA2G12BQ9BX93 195 aa10.62□□□□□ -0.71
CTNNA1-243ENST00000540387 AFDNP55196 1824 aaKnown RBP10.62□□□□□ -0.71
CTNNA1-243ENST00000540387 RFX5P48382 616 aaPredicted RBP10.61□□□□□ -0.71
CTNNA1-243ENST00000540387 ERFEQ4G0M1 354 aa10.61□□□□□ -0.71
CTNNA1-243ENST00000540387 RASSF8Q8NHQ8 419 aa10.61□□□□□ -0.71
CTNNA1-243ENST00000540387 ZNF473Q8WTR7 871 aaKnown RBP10.61□□□□□ -0.71
CTNNA1-243ENST00000540387 ZNF396Q96N95 335 aaPredicted RBP10.61□□□□□ -0.71
CTNNA1-243ENST00000540387 CDC5LQ99459 802 aaKnown RBP10.61□□□□□ -0.71
CTNNA1-243ENST00000540387 SIL1Q9H173 461 aa10.61□□□□□ -0.71
CTNNA1-243ENST00000540387 HAUS2Q9NVX0 235 aa10.61□□□□□ -0.71
CTNNA1-243ENST00000540387 TRPC6Q9Y210 931 aa10.61□□□□□ -0.71
CTNNA1-243ENST00000540387 PDE8AO60658 829 aa10.61□□□□□ -0.71
CTNNA1-243ENST00000540387 ZMYND10O75800 440 aa10.61□□□□□ -0.71
CTNNA1-243ENST00000540387 SMNDC1O75940 238 aaKnown RBP eCLIP10.61□□□□□ -0.71
CTNNA1-243ENST00000540387 CSF1RP07333 972 aa10.61□□□□□ -0.71
CTNNA1-243ENST00000540387 ATP5JP18859 108 aa10.61□□□□□ -0.71
CTNNA1-243ENST00000540387 RPS6KB1P23443 525 aa10.61□□□□□ -0.71
CTNNA1-243ENST00000540387 PTPN12Q05209 780 aaKnown RBP10.61□□□□□ -0.71
CTNNA1-243ENST00000540387 ADALQ6DHV7 355 aa10.61□□□□□ -0.71
CTNNA1-243ENST00000540387 RAD9BQ6WBX8 426 aa10.61□□□□□ -0.71
CTNNA1-243ENST00000540387 TTLL11Q8NHH1 800 aa10.61□□□□□ -0.71
CTNNA1-243ENST00000540387 NSMCE1Q8WV22 266 aa10.61□□□□□ -0.71
CTNNA1-243ENST00000540387 YIPF3Q9GZM5 350 aa10.61□□□□□ -0.71
CTNNA1-243ENST00000540387 ACTR5Q9H9F9 607 aaPredicted RBP10.61□□□□□ -0.71
CTNNA1-243ENST00000540387 PNPLA7Q6ZV29 1317 aa10.61□□□□□ -0.71
CTNNA1-243ENST00000540387 PES1O00541 588 aaKnown RBP10.61□□□□□ -0.71
CTNNA1-243ENST00000540387 SLC27A2O14975 620 aa10.61□□□□□ -0.71
CTNNA1-243ENST00000540387 FESP07332 822 aa10.61□□□□□ -0.71
CTNNA1-243ENST00000540387 SPECC1LQ69YQ0 1117 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms