RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 EAF1Q96JC9 268 aaPredicted RBP6.31□□□□□ -1.4
VPS13A-213ENST00000539950 ZNF512BQ96KM6 892 aaPredicted RBP6.31□□□□□ -1.4
VPS13A-213ENST00000539950 FOXP3Q9BZS1 431 aa6.31□□□□□ -1.4
VPS13A-213ENST00000539950 NOTOA8MTQ0 251 aa6.3□□□□□ -1.4
VPS13A-213ENST00000539950 ETV2O00321 342 aaPredicted RBP6.3□□□□□ -1.4
VPS13A-213ENST00000539950 NFIBO00712 420 aa6.3□□□□□ -1.4
VPS13A-213ENST00000539950 PSPNO60542 156 aa6.3□□□□□ -1.4
VPS13A-213ENST00000539950 EFEMP2O95967 443 aa6.3□□□□□ -1.4
VPS13A-213ENST00000539950 NME1P15531 152 aaKnown RBP6.3□□□□□ -1.4
VPS13A-213ENST00000539950 RPL10P27635 214 aaKnown RBP6.3□□□□□ -1.4
VPS13A-213ENST00000539950 DUSP4Q13115 394 aa6.3□□□□□ -1.4
VPS13A-213ENST00000539950 LCE4AQ5TA78 99 aa6.3□□□□□ -1.4
VPS13A-213ENST00000539950 RNF111Q6ZNA4 994 aa6.3□□□□□ -1.4
VPS13A-213ENST00000539950 ANKLE2Q86XL3 938 aa6.3□□□□□ -1.4
VPS13A-213ENST00000539950 SLITRK4Q8IW52 837 aa6.3□□□□□ -1.4
VPS13A-213ENST00000539950 NKD1Q969G9 470 aa6.3□□□□□ -1.4
VPS13A-213ENST00000539950 SHISA4Q96DD7 197 aa6.3□□□□□ -1.4
VPS13A-213ENST00000539950 TOX2Q96NM4 488 aa6.3□□□□□ -1.4
VPS13A-213ENST00000539950 NT5C1AQ9BXI3 368 aa6.3□□□□□ -1.4
VPS13A-213ENST00000539950 MINPP1Q9UNW1 487 aa6.3□□□□□ -1.4
VPS13A-213ENST00000539950 CLEC3AO75596 197 aa6.29□□□□□ -1.4
VPS13A-213ENST00000539950 PRAMEF1O95521 474 aa6.29□□□□□ -1.4
VPS13A-213ENST00000539950 TMEM253P0C7T8 217 aa6.29□□□□□ -1.4
VPS13A-213ENST00000539950 ZNF165P49910 485 aa6.29□□□□□ -1.4
VPS13A-213ENST00000539950 RAD51AP2Q09MP3 1159 aa6.29□□□□□ -1.4
VPS13A-213ENST00000539950 FBLN7Q53RD9 439 aa6.29□□□□□ -1.4
VPS13A-213ENST00000539950 TMCO4Q5TGY1 634 aa6.29□□□□□ -1.4
VPS13A-213ENST00000539950 ATG14Q6ZNE5 492 aa6.29□□□□□ -1.4
VPS13A-213ENST00000539950 WAPLQ7Z5K2 1190 aa6.29□□□□□ -1.4
VPS13A-213ENST00000539950 SPPL2CQ8IUH8 684 aa6.29□□□□□ -1.4
VPS13A-213ENST00000539950 KIAA0825Q8IV33 1275 aa6.29□□□□□ -1.4
VPS13A-213ENST00000539950 TMEM192Q8IY95 271 aa6.29□□□□□ -1.4
VPS13A-213ENST00000539950 LRRC56Q8IYG6 542 aaPredicted RBP6.29□□□□□ -1.4
VPS13A-213ENST00000539950 ZNF655Q8N720 491 aaPredicted RBP6.29□□□□□ -1.4
VPS13A-213ENST00000539950 ANKS4BQ8N8V4 417 aa6.29□□□□□ -1.4
VPS13A-213ENST00000539950 SPON2Q9BUD6 331 aa6.29□□□□□ -1.4
VPS13A-213ENST00000539950 KRTAP17-1Q9BYP8 105 aa6.29□□□□□ -1.4
VPS13A-213ENST00000539950 BACH2Q9BYV9 841 aa6.29□□□□□ -1.4
VPS13A-213ENST00000539950 PRDM14Q9GZV8 571 aa6.29□□□□□ -1.4
VPS13A-213ENST00000539950 BCL11AQ9H165 835 aa6.29□□□□□ -1.4
VPS13A-213ENST00000539950 CWC22Q9HCG8 908 aaKnown RBP6.29□□□□□ -1.4
VPS13A-213ENST00000539950 CD320Q9NPF0 282 aa6.29□□□□□ -1.4
VPS13A-213ENST00000539950 GPR160Q9UJ42 338 aa6.29□□□□□ -1.4
VPS13A-213ENST00000539950 TCFL5Q9UL49 500 aa6.29□□□□□ -1.4
VPS13A-213ENST00000539950 YBX2Q9Y2T7 364 aaKnown RBP6.29□□□□□ -1.4
VPS13A-213ENST00000539950 TMEM82A0PJX8 343 aa6.28□□□□□ -1.4
VPS13A-213ENST00000539950 MEIS3P2A8K0S8 358 aa6.28□□□□□ -1.4
VPS13A-213ENST00000539950 FKTNO75072 461 aa6.28□□□□□ -1.4
VPS13A-213ENST00000539950 USP2O75604 605 aaPredicted RBP6.28□□□□□ -1.4
VPS13A-213ENST00000539950 CCNFP41002 786 aa6.28□□□□□ -1.4
VPS13A-213ENST00000539950 CHRNEQ04844 493 aa6.28□□□□□ -1.4
VPS13A-213ENST00000539950 BBS9Q3SYG4 887 aa6.28□□□□□ -1.4
VPS13A-213ENST00000539950 ZPBP2Q6X784 338 aa6.28□□□□□ -1.4
VPS13A-213ENST00000539950 IRF2BP1Q8IU81 584 aa6.28□□□□□ -1.4
VPS13A-213ENST00000539950 INTS4Q96HW7 963 aaKnown RBP6.28□□□□□ -1.4
VPS13A-213ENST00000539950 SLC26A8Q96RN1 970 aa6.28□□□□□ -1.4
VPS13A-213ENST00000539950 SLC9A7Q96T83 725 aa6.28□□□□□ -1.4
VPS13A-213ENST00000539950 SLC6A17Q9H1V8 727 aa6.28□□□□□ -1.4
VPS13A-213ENST00000539950 NPIPB6E9PJ23 425 aa6.27□□□□□ -1.41
VPS13A-213ENST00000539950 TNFRSF10CO14798 259 aa6.27□□□□□ -1.41
VPS13A-213ENST00000539950 SIGLEC6O43699 453 aa6.27□□□□□ -1.41
VPS13A-213ENST00000539950 SYPP08247 313 aa6.27□□□□□ -1.41
VPS13A-213ENST00000539950 MED14OSP0DP75 135 aa6.27□□□□□ -1.41
VPS13A-213ENST00000539950 GLDCP23378 1020 aa6.27□□□□□ -1.41
VPS13A-213ENST00000539950 ZNF76P36508 570 aa6.27□□□□□ -1.41
VPS13A-213ENST00000539950 PCBP3P57721 371 aaKnown RBP6.27□□□□□ -1.41
VPS13A-213ENST00000539950 FANCCQ00597 558 aa6.27□□□□□ -1.41
VPS13A-213ENST00000539950 LRRFIP1Q32MZ4 808 aaKnown RBP6.27□□□□□ -1.41
VPS13A-213ENST00000539950 ZNF394Q53GI3 561 aa6.27□□□□□ -1.41
VPS13A-213ENST00000539950 LCNL1Q6ZST4 164 aa6.27□□□□□ -1.41
VPS13A-213ENST00000539950 ZNF605Q86T29 641 aa6.27□□□□□ -1.41
VPS13A-213ENST00000539950 SIRT2Q8IXJ6 389 aa6.27□□□□□ -1.41
VPS13A-213ENST00000539950 KCNN1Q92952 543 aa6.27□□□□□ -1.41
VPS13A-213ENST00000539950 SLC6A18Q96N87 628 aa6.27□□□□□ -1.41
VPS13A-213ENST00000539950 KRTAP4-2Q9BYR5 136 aa6.27□□□□□ -1.41
VPS13A-213ENST00000539950 MCOLN1Q9GZU1 580 aa6.27□□□□□ -1.41
VPS13A-213ENST00000539950 ZMYM5Q9UJ78 669 aa6.27□□□□□ -1.41
VPS13A-213ENST00000539950 MYOCOSA0A1B0GUC4 107 aa6.26□□□□□ -1.41
VPS13A-213ENST00000539950 SSU72P8A0A1W2PR75 194 aa6.26□□□□□ -1.41
VPS13A-213ENST00000539950 FAM86C2PA6NEL3 165 aa6.26□□□□□ -1.41
VPS13A-213ENST00000539950 ACRP10323 421 aa6.26□□□□□ -1.41
VPS13A-213ENST00000539950 SNX17Q15036 470 aa6.26□□□□□ -1.41
VPS13A-213ENST00000539950 KRTAP19-4Q3LI73 84 aa6.26□□□□□ -1.41
VPS13A-213ENST00000539950 NLRX1Q86UT6 975 aa6.26□□□□□ -1.41
VPS13A-213ENST00000539950 LINC00116Q8NCU8 138 aa6.26□□□□□ -1.41
VPS13A-213ENST00000539950 MAP6Q96JE9 813 aa6.26□□□□□ -1.41
VPS13A-213ENST00000539950 MKRN2Q9H000 416 aaKnown RBP6.26□□□□□ -1.41
VPS13A-213ENST00000539950 SMG5Q9UPR3 1016 aaKnown RBP6.26□□□□□ -1.41
VPS13A-213ENST00000539950 PCDHGB7Q9Y5F8 929 aa6.26□□□□□ -1.41
VPS13A-213ENST00000539950 TCAF2A6NFQ2 919 aa6.25□□□□□ -1.41
VPS13A-213ENST00000539950 MEIS1O00470 390 aa6.25□□□□□ -1.41
VPS13A-213ENST00000539950 ZSCAN22P10073 491 aaPredicted RBP6.25□□□□□ -1.41
VPS13A-213ENST00000539950 PDE6BP35913 854 aa6.25□□□□□ -1.41
VPS13A-213ENST00000539950 KCNA10Q16322 511 aa6.25□□□□□ -1.41
VPS13A-213ENST00000539950 USP48Q86UV5 1035 aa6.25□□□□□ -1.41
VPS13A-213ENST00000539950 ZSCAN18Q8TBC5 510 aaPredicted RBP6.25□□□□□ -1.41
VPS13A-213ENST00000539950 HHIPL1Q96JK4 782 aa6.25□□□□□ -1.41
VPS13A-213ENST00000539950 KRTAP4-9Q9BYQ8 210 aa6.25□□□□□ -1.41
VPS13A-213ENST00000539950 ZNF552Q9H707 407 aaPredicted RBP6.25□□□□□ -1.41
VPS13A-213ENST00000539950 CHST7Q9NS84 486 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms