RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 LRRC31Q6UY01 552 aa12.66□□□□□ -0.38
SYNE1-237ENST00000539504 SH3RF1Q7Z6J0 888 aa12.66□□□□□ -0.38
SYNE1-237ENST00000539504 PLIN2Q99541 437 aa12.66□□□□□ -0.38
SYNE1-237ENST00000539504 RWDD2AQ9UIY3 292 aa12.66□□□□□ -0.38
SYNE1-237ENST00000539504 XDHP47989 1333 aa12.66□□□□□ -0.38
SYNE1-237ENST00000539504 TRIM49BA6NDI0 452 aa12.66□□□□□ -0.38
SYNE1-237ENST00000539504 SMIM22K7EJ46 135 aa12.66□□□□□ -0.38
SYNE1-237ENST00000539504 PDE8AO60658 829 aa12.66□□□□□ -0.38
SYNE1-237ENST00000539504 USP14P54578 494 aa12.66□□□□□ -0.38
SYNE1-237ENST00000539504 EVA1CP58658 441 aa12.66□□□□□ -0.38
SYNE1-237ENST00000539504 VGLL2Q8N8G2 317 aa12.66□□□□□ -0.38
SYNE1-237ENST00000539504 CTCFLQ8NI51 663 aaPredicted RBP12.66□□□□□ -0.38
SYNE1-237ENST00000539504 TRIM47Q96LD4 638 aa12.66□□□□□ -0.38
SYNE1-237ENST00000539504 HAUS4Q9H6D7 363 aa12.66□□□□□ -0.38
SYNE1-237ENST00000539504 LMTK3Q96Q04 1460 aa12.65□□□□□ -0.38
SYNE1-237ENST00000539504 RTL9Q8NET4 1388 aa12.65□□□□□ -0.38
SYNE1-237ENST00000539504 MACROD2A1Z1Q3 448 aa12.65□□□□□ -0.38
SYNE1-237ENST00000539504 IL2RBP14784 551 aa12.65□□□□□ -0.38
SYNE1-237ENST00000539504 STAT6P42226 847 aa12.65□□□□□ -0.38
SYNE1-237ENST00000539504 CCDC70Q6NSX1 233 aa12.65□□□□□ -0.38
SYNE1-237ENST00000539504 GTPBP6O43824 516 aaPredicted RBP12.65□□□□□ -0.38
SYNE1-237ENST00000539504 PARP1P09874 1014 aaKnown RBP12.65□□□□□ -0.38
SYNE1-237ENST00000539504 TRIM21P19474 475 aaKnown RBP12.65□□□□□ -0.38
SYNE1-237ENST00000539504 IQCA1Q86XH1 822 aa12.65□□□□□ -0.38
SYNE1-237ENST00000539504 JAKMIP2Q96AA8 810 aa12.65□□□□□ -0.38
SYNE1-237ENST00000539504 RMND1Q9NWS8 449 aa12.65□□□□□ -0.38
SYNE1-237ENST00000539504 CYP2D7A0A087X1C5 515 aa12.65□□□□□ -0.39
SYNE1-237ENST00000539504 KRT86O43790 486 aa12.65□□□□□ -0.39
SYNE1-237ENST00000539504 RPN1P04843 607 aaKnown RBP12.65□□□□□ -0.39
SYNE1-237ENST00000539504 DRC1Q96MC2 740 aa12.65□□□□□ -0.39
SYNE1-237ENST00000539504 C4AP0C0L4 1744 aa12.64□□□□□ -0.39
SYNE1-237ENST00000539504 C4BP0C0L5 1744 aa12.64□□□□□ -0.39
SYNE1-237ENST00000539504 PRCPP42785 496 aa12.64□□□□□ -0.39
SYNE1-237ENST00000539504 MATR3P43243 847 aaKnown RBP eCLIP12.64□□□□□ -0.39
SYNE1-237ENST00000539504 CKAP4Q07065 602 aaKnown RBP12.64□□□□□ -0.39
SYNE1-237ENST00000539504 PHF20Q9BVI0 1012 aa12.64□□□□□ -0.39
SYNE1-237ENST00000539504 ADAMTS7Q9UKP4 1686 aa12.64□□□□□ -0.39
SYNE1-237ENST00000539504 MAGEA9P43362 315 aa12.64□□□□□ -0.39
SYNE1-237ENST00000539504 KRT83P78385 493 aa12.64□□□□□ -0.39
SYNE1-237ENST00000539504 AMPD2Q01433 879 aa12.64□□□□□ -0.39
SYNE1-237ENST00000539504 WDR93Q6P2C0 686 aa12.64□□□□□ -0.39
SYNE1-237ENST00000539504 ATRNO75882 1429 aa12.64□□□□□ -0.39
SYNE1-237ENST00000539504 SOS2Q07890 1332 aaPredicted RBP12.64□□□□□ -0.39
SYNE1-237ENST00000539504 WDR17Q8IZU2 1322 aa12.64□□□□□ -0.39
SYNE1-237ENST00000539504 IDEP14735 1019 aa12.64□□□□□ -0.39
SYNE1-237ENST00000539504 GTF2A1P52655 376 aaPredicted RBP12.64□□□□□ -0.39
SYNE1-237ENST00000539504 PKN1Q16512 942 aa12.64□□□□□ -0.39
SYNE1-237ENST00000539504 ZNF658Q5TYW1 1059 aaPredicted RBP12.64□□□□□ -0.39
SYNE1-237ENST00000539504 ENAHQ8N8S7 591 aaPredicted RBP12.64□□□□□ -0.39
SYNE1-237ENST00000539504 SHISA4Q96DD7 197 aa12.64□□□□□ -0.39
SYNE1-237ENST00000539504 ZSCAN10Q96SZ4 725 aaPredicted RBP12.64□□□□□ -0.39
SYNE1-237ENST00000539504 EFCC1Q9HA90 598 aa12.64□□□□□ -0.39
SYNE1-237ENST00000539504 CYLC1P35663 651 aaPredicted RBP12.63□□□□□ -0.39
SYNE1-237ENST00000539504 GGCXP38435 758 aa12.63□□□□□ -0.39
SYNE1-237ENST00000539504 DNAJC21Q5F1R6 531 aaKnown RBP12.63□□□□□ -0.39
SYNE1-237ENST00000539504 TRAPPC11Q7Z392 1133 aa12.63□□□□□ -0.39
SYNE1-237ENST00000539504 GPIHBP1Q8IV16 184 aa12.63□□□□□ -0.39
SYNE1-237ENST00000539504 MTMR7Q9Y216 660 aa12.63□□□□□ -0.39
SYNE1-237ENST00000539504 REXO2Q9Y3B8 237 aaKnown RBP12.63□□□□□ -0.39
SYNE1-237ENST00000539504 MROH5Q6ZUA9 1318 aa12.63□□□□□ -0.39
SYNE1-237ENST00000539504 CDHR2Q9BYE9 1310 aa12.63□□□□□ -0.39
SYNE1-237ENST00000539504 ZNF185O15231 689 aa12.63□□□□□ -0.39
SYNE1-237ENST00000539504 PRPF3O43395 683 aaKnown RBP12.63□□□□□ -0.39
SYNE1-237ENST00000539504 MB21D1Q8N884 522 aa12.63□□□□□ -0.39
SYNE1-237ENST00000539504 FAM76AQ8TAV0 307 aa12.63□□□□□ -0.39
SYNE1-237ENST00000539504 HPCAL4Q9UM19 191 aa12.63□□□□□ -0.39
SYNE1-237ENST00000539504 PLEKHG2Q9H7P9 1386 aa12.63□□□□□ -0.39
SYNE1-237ENST00000539504 MAGEB6P1A0A0J9YX57 407 aa12.63□□□□□ -0.39
SYNE1-237ENST00000539504 H7C1D1 291 aa12.63□□□□□ -0.39
SYNE1-237ENST00000539504 PPFIA4O75335 1185 aa12.63□□□□□ -0.39
SYNE1-237ENST00000539504 MRPS25P82663 173 aaKnown RBP12.63□□□□□ -0.39
SYNE1-237ENST00000539504 CYP27A1Q02318 531 aa12.63□□□□□ -0.39
SYNE1-237ENST00000539504 MICALL1Q8N3F8 863 aa12.63□□□□□ -0.39
SYNE1-237ENST00000539504 MSL3Q8N5Y2 521 aaKnown RBP12.63□□□□□ -0.39
SYNE1-237ENST00000539504 EHBP1Q8NDI1 1231 aa12.63□□□□□ -0.39
SYNE1-237ENST00000539504 ATP2C1P98194 919 aaPredicted RBP12.62□□□□□ -0.39
SYNE1-237ENST00000539504 COG1Q8WTW3 980 aa12.62□□□□□ -0.39
SYNE1-237ENST00000539504 PPM1EQ8WY54 764 aa12.62□□□□□ -0.39
SYNE1-237ENST00000539504 GOLGA6CA6NDK9 693 aa12.62□□□□□ -0.39
SYNE1-237ENST00000539504 LRRC10BA6NIK2 292 aa12.62□□□□□ -0.39
SYNE1-237ENST00000539504 B4DLN1 442 aa12.62□□□□□ -0.39
SYNE1-237ENST00000539504 SYF2O95926 243 aaKnown RBP12.62□□□□□ -0.39
SYNE1-237ENST00000539504 GOLGA6DP0CG33 693 aa12.62□□□□□ -0.39
SYNE1-237ENST00000539504 C2orf54Q08AI8 447 aa12.62□□□□□ -0.39
SYNE1-237ENST00000539504 PPP2R5BQ15173 497 aa12.62□□□□□ -0.39
SYNE1-237ENST00000539504 FKBP15Q5T1M5 1219 aa12.62□□□□□ -0.39
SYNE1-237ENST00000539504 PYM1Q9BRP8 204 aaKnown RBP12.62□□□□□ -0.39
SYNE1-237ENST00000539504 GOLGA6AQ9NYA3 693 aa12.62□□□□□ -0.39
SYNE1-237ENST00000539504 FER1L4A9Z1Z3 1794 aa12.62□□□□□ -0.39
SYNE1-237ENST00000539504 GOLGA6BA6NDN3 693 aa12.61□□□□□ -0.39
SYNE1-237ENST00000539504 PSMD14O00487 310 aa12.61□□□□□ -0.39
SYNE1-237ENST00000539504 TBC1D8BQ0IIM8 1120 aa12.61□□□□□ -0.39
SYNE1-237ENST00000539504 PSMB7Q99436 277 aa12.61□□□□□ -0.39
SYNE1-237ENST00000539504 SELENOOQ9BVL4 669 aa12.61□□□□□ -0.39
SYNE1-237ENST00000539504 RBM28Q9NW13 759 aaKnown RBP12.61□□□□□ -0.39
SYNE1-237ENST00000539504 PSMA7O14818 248 aa12.61□□□□□ -0.39
SYNE1-237ENST00000539504 FECHP22830 423 aa12.61□□□□□ -0.39
SYNE1-237ENST00000539504 MTIF2P46199 727 aaKnown RBP12.61□□□□□ -0.39
SYNE1-237ENST00000539504 HERVK_113P62684 666 aa12.61□□□□□ -0.39
SYNE1-237ENST00000539504 CCDC96Q2M329 555 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms