RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 A0A1W2PQ45 241 aaPredicted RBP15.09■□□□□ 0.01
CLSTN3-208ENST00000538933 A0A1W2PQY0 241 aa15.09■□□□□ 0.01
CLSTN3-208ENST00000538933 PQBP1O60828 265 aaKnown RBP15.09■□□□□ 0.01
CLSTN3-208ENST00000538933 BAG3O95817 575 aa15.09■□□□□ 0.01
CLSTN3-208ENST00000538933 TIMP1P01033 207 aa15.09■□□□□ 0.01
CLSTN3-208ENST00000538933 USP14P54578 494 aa15.09■□□□□ 0.01
CLSTN3-208ENST00000538933 TMEM240Q5SV17 173 aa15.09■□□□□ 0.01
CLSTN3-208ENST00000538933 SMC5Q8IY18 1101 aa15.09■□□□□ 0.01
CLSTN3-208ENST00000538933 SHCBP1Q8NEM2 672 aa15.09■□□□□ 0.01
CLSTN3-208ENST00000538933 KIF1BPQ96EK5 621 aa15.09■□□□□ 0.01
CLSTN3-208ENST00000538933 LRFN3Q9BTN0 628 aa15.09■□□□□ 0.01
CLSTN3-208ENST00000538933 LRRCC1Q9C099 1032 aa15.09■□□□□ 0.01
CLSTN3-208ENST00000538933 SAP30BPQ9UHR5 308 aaKnown RBP15.09■□□□□ 0.01
CLSTN3-208ENST00000538933 NOP58Q9Y2X3 529 aaKnown RBP15.09■□□□□ 0.01
CLSTN3-208ENST00000538933 PLCG2P16885 1265 aa15.08■□□□□ 0
CLSTN3-208ENST00000538933 ERCC3P19447 782 aa15.08■□□□□ 0
CLSTN3-208ENST00000538933 SLC44A5Q8NCS7 719 aa15.08■□□□□ 0
CLSTN3-208ENST00000538933 MAML3Q96JK9 1138 aa15.08■□□□□ 0
CLSTN3-208ENST00000538933 NEUROD6Q96NK8 337 aa15.08■□□□□ 0
CLSTN3-208ENST00000538933 FEZ1Q99689 392 aa15.08■□□□□ 0
CLSTN3-208ENST00000538933 SPATC1LQ9H0A9 340 aa15.08■□□□□ 0
CLSTN3-208ENST00000538933 RPAP3Q9H6T3 665 aaPredicted RBP15.08■□□□□ 0
CLSTN3-208ENST00000538933 XPNPEP3Q9NQH7 507 aa15.08■□□□□ 0
CLSTN3-208ENST00000538933 CXXC1Q9P0U4 656 aaPredicted RBP15.08■□□□□ 0
CLSTN3-208ENST00000538933 LRP2BPQ9P2M1 347 aa15.08■□□□□ 0
CLSTN3-208ENST00000538933 TBX21Q9UL17 535 aa15.08■□□□□ 0
CLSTN3-208ENST00000538933 PARP14Q460N5 1801 aa15.08■□□□□ 0
CLSTN3-208ENST00000538933 PGK1P00558 417 aa15.07■□□□□ 0
CLSTN3-208ENST00000538933 GUCY1A2P33402 732 aa15.07■□□□□ 0
CLSTN3-208ENST00000538933 NAA16Q6N069 864 aaPredicted RBP15.07■□□□□ 0
CLSTN3-208ENST00000538933 MFSD5Q6N075 450 aa15.07■□□□□ 0
CLSTN3-208ENST00000538933 ABRAQ8N0Z2 381 aa15.07■□□□□ 0
CLSTN3-208ENST00000538933 TRIM34Q9BYJ4 488 aa15.07■□□□□ 0
CLSTN3-208ENST00000538933 EPHX3Q9H6B9 360 aa15.07■□□□□ 0
CLSTN3-208ENST00000538933 TAL1P17542 331 aaPredicted RBP15.06■□□□□ 0
CLSTN3-208ENST00000538933 COG2Q14746 738 aa15.06■□□□□ 0
CLSTN3-208ENST00000538933 RNF180Q86T96 592 aa15.06■□□□□ 0
CLSTN3-208ENST00000538933 CLASRPQ8N2M8 674 aaKnown RBP15.06■□□□□ 0
CLSTN3-208ENST00000538933 RHPN1Q8TCX5 695 aa15.06■□□□□ 0
CLSTN3-208ENST00000538933 NOL10Q9BSC4 688 aaKnown RBP15.06■□□□□ 0
CLSTN3-208ENST00000538933 LNPKQ9C0E8 428 aa15.06■□□□□ 0
CLSTN3-208ENST00000538933 HOXC10Q9NYD6 342 aa15.06■□□□□ 0
CLSTN3-208ENST00000538933 NRBP1Q9UHY1 535 aa15.06■□□□□ 0
CLSTN3-208ENST00000538933 COL11A1P12107 1806 aaPredicted RBP15.06■□□□□ 0
CLSTN3-208ENST00000538933 PRRC2BQ5JSZ5 2229 aaKnown RBP15.05■□□□□ 0
CLSTN3-208ENST00000538933 SMARCA5O60264 1052 aaPredicted RBP15.05■□□□□ -0
CLSTN3-208ENST00000538933 ADAMTS4O75173 837 aa15.05■□□□□ -0
CLSTN3-208ENST00000538933 RARBP10826 455 aa15.05■□□□□ -0
CLSTN3-208ENST00000538933 IGFBP4P22692 258 aa15.05■□□□□ -0
CLSTN3-208ENST00000538933 DYNLL1P63167 89 aaKnown RBP15.05■□□□□ -0
CLSTN3-208ENST00000538933 TFF2Q03403 129 aa15.05■□□□□ -0
CLSTN3-208ENST00000538933 RAB3GAP1Q15042 981 aa15.05■□□□□ -0
CLSTN3-208ENST00000538933 CCSAPQ6IQ19 270 aaPredicted RBP15.05■□□□□ -0
CLSTN3-208ENST00000538933 MROH8Q9H579 483 aa15.05■□□□□ -0
CLSTN3-208ENST00000538933 IL1RAPL2Q9NP60 686 aa15.05■□□□□ -0
CLSTN3-208ENST00000538933 ROBO3Q96MS0 1386 aa15.04■□□□□ -0
CLSTN3-208ENST00000538933 A0A1W2PRG0 241 aa15.04■□□□□ -0
CLSTN3-208ENST00000538933 DCDC2CA8MYV0 355 aa15.04■□□□□ -0
CLSTN3-208ENST00000538933 HLA-DOAP06340 250 aa15.04■□□□□ -0
CLSTN3-208ENST00000538933 ZNF865P0CJ78 1059 aaPredicted RBP15.04■□□□□ -0
CLSTN3-208ENST00000538933 CDK7P50613 346 aa15.04■□□□□ -0
CLSTN3-208ENST00000538933 ACLYP53396 1101 aa15.04■□□□□ -0
CLSTN3-208ENST00000538933 NUCB1Q02818 461 aa15.04■□□□□ -0
CLSTN3-208ENST00000538933 ABCB5Q2M3G0 1257 aa15.04■□□□□ -0
CLSTN3-208ENST00000538933 KIAA1755Q5JYT7 1200 aa15.04■□□□□ -0
CLSTN3-208ENST00000538933 CCDC129Q6ZRS4 1044 aa15.04■□□□□ -0
CLSTN3-208ENST00000538933 ZNF365Q70YC5 407 aa15.04■□□□□ -0
CLSTN3-208ENST00000538933 CHD1LQ86WJ1 897 aa15.04■□□□□ -0
CLSTN3-208ENST00000538933 TSEN34Q9BSV6 310 aaKnown RBP15.04■□□□□ -0
CLSTN3-208ENST00000538933 EHD4Q9H223 541 aa15.04■□□□□ -0
CLSTN3-208ENST00000538933 SNRKQ9NRH2 765 aa15.04■□□□□ -0
CLSTN3-208ENST00000538933 SLC5A4Q9NY91 659 aa15.04■□□□□ -0
CLSTN3-208ENST00000538933 TRIOO75962 3097 aa15.03■□□□□ -0
CLSTN3-208ENST00000538933 CYP2E1P05181 493 aaPredicted RBP15.03■□□□□ -0
CLSTN3-208ENST00000538933 IFIT2P09913 472 aaKnown RBP15.03■□□□□ -0
CLSTN3-208ENST00000538933 UQCRFS1P1P0C7P4 283 aa15.03■□□□□ -0
CLSTN3-208ENST00000538933 CSF2RAP15509 400 aa15.03■□□□□ -0
CLSTN3-208ENST00000538933 SHMT1P34896 483 aa15.03■□□□□ -0
CLSTN3-208ENST00000538933 KCNQ1P51787 676 aa15.03■□□□□ -0
CLSTN3-208ENST00000538933 PPIGQ13427 754 aaKnown RBP eCLIP15.03■□□□□ -01e-7■■□□□ 12.5
CLSTN3-208ENST00000538933 CERKLQ49MI3 558 aaPredicted RBP15.03■□□□□ -0
CLSTN3-208ENST00000538933 GORABQ5T7V8 394 aa15.03■□□□□ -0
CLSTN3-208ENST00000538933 KLHDC9Q8NEP7 349 aa15.03■□□□□ -0
CLSTN3-208ENST00000538933 IL27Q8NEV9 243 aa15.03■□□□□ -0
CLSTN3-208ENST00000538933 LENG1Q96BZ8 264 aaPredicted RBP15.03■□□□□ -0
CLSTN3-208ENST00000538933 C11orf16Q9NQ32 467 aa15.03■□□□□ -0
CLSTN3-208ENST00000538933 SERPINB13Q9UIV8 391 aa15.03■□□□□ -0
CLSTN3-208ENST00000538933 YBX2Q9Y2T7 364 aaKnown RBP15.03■□□□□ -0
CLSTN3-208ENST00000538933 ACRP10323 421 aa15.02■□□□□ -0
CLSTN3-208ENST00000538933 AACSQ86V21 672 aa15.02■□□□□ -0
CLSTN3-208ENST00000538933 GPATCH3Q96I76 525 aa15.02■□□□□ -0
CLSTN3-208ENST00000538933 TINF2Q9BSI4 451 aa15.02■□□□□ -0
CLSTN3-208ENST00000538933 NKX2-4Q9H2Z4 354 aa15.02■□□□□ -0
CLSTN3-208ENST00000538933 HCN4Q9Y3Q4 1203 aa15.02■□□□□ -0
CLSTN3-208ENST00000538933 DSG3P32926 999 aa15.01□□□□□ -0.01
CLSTN3-208ENST00000538933 SEPT2Q15019 361 aa15.01□□□□□ -0.01
CLSTN3-208ENST00000538933 RAB30Q15771 203 aa15.01□□□□□ -0.01
CLSTN3-208ENST00000538933 ZNF792Q3KQV3 632 aa15.01□□□□□ -0.01
CLSTN3-208ENST00000538933 TNNI3KQ59H18 835 aa15.01□□□□□ -0.01
CLSTN3-208ENST00000538933 NCAPG2Q86XI2 1143 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms