RNA–Protein interactions for RNA: ENST00000537641.5

CPSF7-218, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 5

Gene CPSF7, Length 1,728 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-218ENST00000537641 RBM28Q9NW13 759 aaKnown RBP13.73□□□□□ -0.21
CPSF7-218ENST00000537641 ANAPC4Q9UJX5 808 aa13.73□□□□□ -0.21
CPSF7-218ENST00000537641 CTNND2Q9UQB3 1225 aa13.73□□□□□ -0.21
CPSF7-218ENST00000537641 NUTM2BA6NNL0 878 aaPredicted RBP13.72□□□□□ -0.21
CPSF7-218ENST00000537641 NUTM2EB1AL46 878 aaPredicted RBP13.72□□□□□ -0.21
CPSF7-218ENST00000537641 PRPF3O43395 683 aaKnown RBP13.72□□□□□ -0.21
CPSF7-218ENST00000537641 AMPD2Q01433 879 aa13.72□□□□□ -0.21
CPSF7-218ENST00000537641 RASGRF1Q13972 1273 aa13.72□□□□□ -0.21
CPSF7-218ENST00000537641 CASP8Q14790 479 aa13.72□□□□□ -0.21
CPSF7-218ENST00000537641 KRT31Q15323 416 aa13.72□□□□□ -0.21
CPSF7-218ENST00000537641 SEC23AQ15436 765 aa13.72□□□□□ -0.21
CPSF7-218ENST00000537641 TOMM22Q9NS69 142 aa13.72□□□□□ -0.21
CPSF7-218ENST00000537641 RMND1Q9NWS8 449 aa13.72□□□□□ -0.21
CPSF7-218ENST00000537641 SLC4A4Q9Y6R1 1079 aa13.72□□□□□ -0.21
CPSF7-218ENST00000537641 A0A0U1RQJ8 604 aa13.71□□□□□ -0.21
CPSF7-218ENST00000537641 GTPBP6O43824 516 aaPredicted RBP13.71□□□□□ -0.21
CPSF7-218ENST00000537641 ATP2B1P20020 1258 aa13.71□□□□□ -0.21
CPSF7-218ENST00000537641 VSNL1P62760 191 aa13.71□□□□□ -0.21
CPSF7-218ENST00000537641 HSP90B2PQ58FF3 399 aa13.71□□□□□ -0.21
CPSF7-218ENST00000537641 CLEC4GQ6UXB4 293 aa13.71□□□□□ -0.21
CPSF7-218ENST00000537641 LCORLQ8N3X6 602 aa13.71□□□□□ -0.21
CPSF7-218ENST00000537641 CTCFLQ8NI51 663 aaPredicted RBP13.71□□□□□ -0.21
CPSF7-218ENST00000537641 NUP133Q8WUM0 1156 aa13.71□□□□□ -0.21
CPSF7-218ENST00000537641 ATRIPQ8WXE1 791 aa13.71□□□□□ -0.21
CPSF7-218ENST00000537641 ESR2Q92731 530 aa13.71□□□□□ -0.21
CPSF7-218ENST00000537641 EPSTI1Q96J88 318 aa13.71□□□□□ -0.21
CPSF7-218ENST00000537641 CDC5LQ99459 802 aaKnown RBP13.71□□□□□ -0.21
CPSF7-218ENST00000537641 ZKSCAN3Q9BRR0 538 aa13.71□□□□□ -0.21
CPSF7-218ENST00000537641 MKRN1Q9UHC7 482 aaKnown RBP13.71□□□□□ -0.21
CPSF7-218ENST00000537641 MYO6Q9UM54 1294 aa13.71□□□□□ -0.21
CPSF7-218ENST00000537641 TNKSO95271 1327 aa13.71□□□□□ -0.22
CPSF7-218ENST00000537641 XDHP47989 1333 aa13.71□□□□□ -0.22
CPSF7-218ENST00000537641 MYO1CO00159 1063 aa13.7□□□□□ -0.22
CPSF7-218ENST00000537641 N4BP3O15049 544 aa13.7□□□□□ -0.22
CPSF7-218ENST00000537641 RGL2O15211 777 aa13.7□□□□□ -0.22
CPSF7-218ENST00000537641 GYS2P54840 703 aa13.7□□□□□ -0.22
CPSF7-218ENST00000537641 ATP2C1P98194 919 aaPredicted RBP13.7□□□□□ -0.22
CPSF7-218ENST00000537641 PPARAQ07869 468 aa13.7□□□□□ -0.22
CPSF7-218ENST00000537641 PAK1Q13153 545 aa13.7□□□□□ -0.22
CPSF7-218ENST00000537641 E2F4Q16254 413 aa13.7□□□□□ -0.22
CPSF7-218ENST00000537641 PKN1Q16512 942 aa13.7□□□□□ -0.22
CPSF7-218ENST00000537641 TTC38Q5R3I4 469 aa13.7□□□□□ -0.22
CPSF7-218ENST00000537641 ZNF662Q6ZS27 426 aa13.7□□□□□ -0.22
CPSF7-218ENST00000537641 CCDC148Q8NFR7 591 aa13.7□□□□□ -0.22
CPSF7-218ENST00000537641 TNFRSF25Q93038 417 aa13.7□□□□□ -0.22
CPSF7-218ENST00000537641 RPGRIP1Q96KN7 1286 aa13.7□□□□□ -0.22
CPSF7-218ENST00000537641 RHOXF2BP0C7M4 288 aa13.7□□□□□ -0.22
CPSF7-218ENST00000537641 CALM1P0DP23 149 aa13.7□□□□□ -0.22
CPSF7-218ENST00000537641 CALM2P0DP24 149 aa13.7□□□□□ -0.22
CPSF7-218ENST00000537641 CALM3P0DP25 149 aa13.7□□□□□ -0.22
CPSF7-218ENST00000537641 TRAPPC10P48553 1259 aa13.7□□□□□ -0.22
CPSF7-218ENST00000537641 AARSP49588 968 aaKnown RBP eCLIP13.7□□□□□ -0.22
CPSF7-218ENST00000537641 MAP9Q49MG5 647 aa13.7□□□□□ -0.22
CPSF7-218ENST00000537641 SHISA4Q96DD7 197 aa13.7□□□□□ -0.22
CPSF7-218ENST00000537641 TRERF1Q96PN7 1200 aa13.7□□□□□ -0.22
CPSF7-218ENST00000537641 NUP88Q99567 741 aaPredicted RBP13.7□□□□□ -0.22
CPSF7-218ENST00000537641 RHOXF2Q9BQY4 288 aa13.7□□□□□ -0.22
CPSF7-218ENST00000537641 HAUS4Q9H6D7 363 aa13.7□□□□□ -0.22
CPSF7-218ENST00000537641 VPS54Q9P1Q0 977 aa13.7□□□□□ -0.22
CPSF7-218ENST00000537641 FAN1Q9Y2M0 1017 aa13.7□□□□□ -0.22
CPSF7-218ENST00000537641 RRP15Q9Y3B9 282 aaKnown RBP13.7□□□□□ -0.22
CPSF7-218ENST00000537641 FAM205CA6NFA0 338 aa13.69□□□□□ -0.22
CPSF7-218ENST00000537641 KCNJ18B7U540 433 aa13.69□□□□□ -0.22
CPSF7-218ENST00000537641 PSMD14O00487 310 aa13.69□□□□□ -0.22
CPSF7-218ENST00000537641 PRKAB2O43741 272 aa13.69□□□□□ -0.22
CPSF7-218ENST00000537641 CCT6AP40227 531 aaKnown RBP13.69□□□□□ -0.22
CPSF7-218ENST00000537641 CKAP4Q07065 602 aaKnown RBP13.69□□□□□ -0.22
CPSF7-218ENST00000537641 FUT2Q10981 343 aa13.69□□□□□ -0.22
CPSF7-218ENST00000537641 SEMA3FQ13275 785 aa13.69□□□□□ -0.22
CPSF7-218ENST00000537641 KCNJ12Q14500 433 aa13.69□□□□□ -0.22
CPSF7-218ENST00000537641 TCP11X2Q5H9J9 407 aa13.69□□□□□ -0.22
CPSF7-218ENST00000537641 ZNF658Q5TYW1 1059 aaPredicted RBP13.69□□□□□ -0.22
CPSF7-218ENST00000537641 RRAGBQ5VZM2 374 aa13.69□□□□□ -0.22
CPSF7-218ENST00000537641 PDXDC2PQ6P474 469 aa13.69□□□□□ -0.22
CPSF7-218ENST00000537641 TRAPPC11Q7Z392 1133 aa13.69□□□□□ -0.22
CPSF7-218ENST00000537641 LAMB1P07942 1786 aa13.69□□□□□ -0.22
CPSF7-218ENST00000537641 A0A1W2PQC6 194 aa13.68□□□□□ -0.22
CPSF7-218ENST00000537641 TARSL2A2RTX5 802 aaKnown RBP13.68□□□□□ -0.22
CPSF7-218ENST00000537641 KCNQ2O43526 872 aa13.68□□□□□ -0.22
CPSF7-218ENST00000537641 DDAH1O94760 285 aa13.68□□□□□ -0.22
CPSF7-218ENST00000537641 PCP11498 1178 aaKnown RBP13.68□□□□□ -0.22
CPSF7-218ENST00000537641 KRT9P35527 623 aa13.68□□□□□ -0.22
CPSF7-218ENST00000537641 USP14P54578 494 aa13.68□□□□□ -0.22
CPSF7-218ENST00000537641 CHRNDQ07001 517 aa13.68□□□□□ -0.22
CPSF7-218ENST00000537641 NOM1Q5C9Z4 860 aaKnown RBP13.68□□□□□ -0.22
CPSF7-218ENST00000537641 SMYD4Q8IYR2 804 aaPredicted RBP13.68□□□□□ -0.22
CPSF7-218ENST00000537641 CMTR1Q8N1G2 835 aaKnown RBP13.68□□□□□ -0.22
CPSF7-218ENST00000537641 CCDC82Q8N4S0 544 aa13.68□□□□□ -0.22
CPSF7-218ENST00000537641 EHBP1Q8NDI1 1231 aa13.68□□□□□ -0.22
CPSF7-218ENST00000537641 TRIM34Q9BYJ4 488 aa13.68□□□□□ -0.22
CPSF7-218ENST00000537641 COL24A1Q17RW2 1714 aa13.68□□□□□ -0.22
CPSF7-218ENST00000537641 COL4A1P02462 1669 aa13.68□□□□□ -0.22
CPSF7-218ENST00000537641 CNTNAP4Q9C0A0 1308 aa13.68□□□□□ -0.22
CPSF7-218ENST00000537641 TAF1P21675 1872 aa13.68□□□□□ -0.22
CPSF7-218ENST00000537641 H7C1D1 291 aa13.67□□□□□ -0.22
CPSF7-218ENST00000537641 TOM1O60784 492 aa13.67□□□□□ -0.22
CPSF7-218ENST00000537641 NDUFA10O95299 355 aa13.67□□□□□ -0.22
CPSF7-218ENST00000537641 CASP1P29466 404 aa13.67□□□□□ -0.22
CPSF7-218ENST00000537641 EARS2Q5JPH6 523 aaKnown RBP13.67□□□□□ -0.22
CPSF7-218ENST00000537641 CATIPQ7Z7H3 387 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms