RNA–Protein interactions for RNA: ENST00000533704.1

CAPN1-225, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 643 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-225ENST00000533704 CLIP2Q9UDT6 1046 aa12.43□□□□□ -0.42
CAPN1-225ENST00000533704 ZNF236Q9UL36 1845 aa12.42□□□□□ -0.42
CAPN1-225ENST00000533704 A0A0D9SFI3 127 aa12.42□□□□□ -0.42
CAPN1-225ENST00000533704 H0YGN5 161 aa12.42□□□□□ -0.42
CAPN1-225ENST00000533704 TSPY3P0CV98 308 aa12.42□□□□□ -0.42
CAPN1-225ENST00000533704 TSPY8P0CW00 308 aa12.42□□□□□ -0.42
CAPN1-225ENST00000533704 CCND3P30281 292 aaPredicted RBP12.42□□□□□ -0.42
CAPN1-225ENST00000533704 CTDSPL2Q05D32 466 aa12.42□□□□□ -0.42
CAPN1-225ENST00000533704 VPS53Q5VIR6 699 aa12.42□□□□□ -0.42
CAPN1-225ENST00000533704 MFSD14CQ5VZR4 134 aa12.42□□□□□ -0.42
CAPN1-225ENST00000533704 DPP9Q86TI2 863 aa12.42□□□□□ -0.42
CAPN1-225ENST00000533704 CHD1LQ86WJ1 897 aa12.42□□□□□ -0.42
CAPN1-225ENST00000533704 LRRC47Q8N1G4 583 aaKnown RBP12.42□□□□□ -0.42
CAPN1-225ENST00000533704 DIS3LQ8TF46 1054 aaKnown RBP12.42□□□□□ -0.42
CAPN1-225ENST00000533704 CEP95Q96GE4 821 aa12.42□□□□□ -0.42
CAPN1-225ENST00000533704 PAWRQ96IZ0 340 aaKnown RBP12.42□□□□□ -0.42
CAPN1-225ENST00000533704 FAM227BQ96M60 508 aa12.42□□□□□ -0.42
CAPN1-225ENST00000533704 CRISPLD2Q9H0B8 497 aa12.42□□□□□ -0.42
CAPN1-225ENST00000533704 FLRT1Q9NZU1 646 aa12.42□□□□□ -0.42
CAPN1-225ENST00000533704 NYAP2Q9P242 653 aa12.42□□□□□ -0.42
CAPN1-225ENST00000533704 MKI67P46013 3256 aaKnown RBP12.42□□□□□ -0.42
CAPN1-225ENST00000533704 F5H6K3 240 aa12.41□□□□□ -0.42
CAPN1-225ENST00000533704 NDUFB10O96000 172 aa12.41□□□□□ -0.42
CAPN1-225ENST00000533704 ADORA2AP29274 412 aa12.41□□□□□ -0.42
CAPN1-225ENST00000533704 CNGA1P29973 690 aa12.41□□□□□ -0.42
CAPN1-225ENST00000533704 SLC4A3P48751 1232 aa12.41□□□□□ -0.42
CAPN1-225ENST00000533704 TFAP4Q01664 338 aa12.41□□□□□ -0.42
CAPN1-225ENST00000533704 KLRC3Q07444 240 aa12.41□□□□□ -0.42
CAPN1-225ENST00000533704 NMIQ13287 307 aaPredicted RBP12.41□□□□□ -0.42
CAPN1-225ENST00000533704 GRB14Q14449 540 aa12.41□□□□□ -0.42
CAPN1-225ENST00000533704 TMEM132BQ14DG7 1078 aa12.41□□□□□ -0.42
CAPN1-225ENST00000533704 UBE2Q1Q7Z7E8 422 aa12.41□□□□□ -0.42
CAPN1-225ENST00000533704 NPLOC4Q8TAT6 608 aa12.41□□□□□ -0.42
CAPN1-225ENST00000533704 HELLSQ9NRZ9 838 aa12.41□□□□□ -0.42
CAPN1-225ENST00000533704 TOMM22Q9NS69 142 aa12.41□□□□□ -0.42
CAPN1-225ENST00000533704 TRIOBPQ9H2D6 2365 aa12.41□□□□□ -0.42
CAPN1-225ENST00000533704 SMCHD1A6NHR9 2005 aa12.4□□□□□ -0.42
CAPN1-225ENST00000533704 IGKV6D-41A0A0C4DH26 115 aa12.4□□□□□ -0.42
CAPN1-225ENST00000533704 RANBP6O60518 1105 aaKnown RBP12.4□□□□□ -0.42
CAPN1-225ENST00000533704 CYP2C19P33261 490 aa12.4□□□□□ -0.42
CAPN1-225ENST00000533704 NUCB1Q02818 461 aa12.4□□□□□ -0.42
CAPN1-225ENST00000533704 MCMDC2Q4G0Z9 681 aa12.4□□□□□ -0.42
CAPN1-225ENST00000533704 MAP3K21Q5TCX8 1036 aa12.4□□□□□ -0.42
CAPN1-225ENST00000533704 NECAB2Q7Z6G3 386 aa12.4□□□□□ -0.42
CAPN1-225ENST00000533704 PLEKHM2Q8IWE5 1019 aa12.4□□□□□ -0.42
CAPN1-225ENST00000533704 SHCBP1Q8NEM2 672 aa12.4□□□□□ -0.42
CAPN1-225ENST00000533704 SLF1Q9BQI6 1058 aa12.4□□□□□ -0.42
CAPN1-225ENST00000533704 MROH8Q9H579 483 aa12.4□□□□□ -0.42
CAPN1-225ENST00000533704 INCENPQ9NQS7 918 aa12.4□□□□□ -0.42
CAPN1-225ENST00000533704 MTMR4Q9NYA4 1195 aa12.4□□□□□ -0.42
CAPN1-225ENST00000533704 PPP1R9AQ9ULJ8 1098 aa12.4□□□□□ -0.42
CAPN1-225ENST00000533704 MTMR7Q9Y216 660 aa12.4□□□□□ -0.42
CAPN1-225ENST00000533704 CTDP1Q9Y5B0 961 aaPredicted RBP12.4□□□□□ -0.42
CAPN1-225ENST00000533704 TSPY2A6NKD2 308 aa12.39□□□□□ -0.43
CAPN1-225ENST00000533704 VWA5AO00534 786 aa12.39□□□□□ -0.43
CAPN1-225ENST00000533704 FOXP2O15409 715 aa12.39□□□□□ -0.43
CAPN1-225ENST00000533704 STRNO43815 780 aa12.39□□□□□ -0.43
CAPN1-225ENST00000533704 TTLL1O95922 423 aa12.39□□□□□ -0.43
CAPN1-225ENST00000533704 STAT3P40763 770 aa12.39□□□□□ -0.43
CAPN1-225ENST00000533704 RRP12Q5JTH9 1297 aaKnown RBP12.39□□□□□ -0.43
CAPN1-225ENST00000533704 NEDD1Q8NHV4 660 aa12.39□□□□□ -0.43
CAPN1-225ENST00000533704 MMP19Q99542 508 aa12.39□□□□□ -0.43
CAPN1-225ENST00000533704 MCM3APO60318 1980 aa12.39□□□□□ -0.43
CAPN1-225ENST00000533704 EVI5O60447 810 aa12.38□□□□□ -0.43
CAPN1-225ENST00000533704 COBLO75128 1261 aa12.38□□□□□ -0.43
CAPN1-225ENST00000533704 SLC25A27O95847 323 aa12.38□□□□□ -0.43
CAPN1-225ENST00000533704 HOXC6P09630 235 aa12.38□□□□□ -0.43
CAPN1-225ENST00000533704 FCER1AP12319 257 aa12.38□□□□□ -0.43
CAPN1-225ENST00000533704 CAPN2P17655 700 aa12.38□□□□□ -0.43
CAPN1-225ENST00000533704 HAND2P61296 217 aa12.38□□□□□ -0.43
CAPN1-225ENST00000533704 IKQ13123 557 aaPredicted RBP12.38□□□□□ -0.43
CAPN1-225ENST00000533704 SLFN13Q68D06 897 aa12.38□□□□□ -0.43
CAPN1-225ENST00000533704 ZNF589Q86UQ0 364 aaPredicted RBP12.38□□□□□ -0.43
CAPN1-225ENST00000533704 CPXCR1Q8N123 301 aa12.38□□□□□ -0.43
CAPN1-225ENST00000533704 PIAS4Q8N2W9 510 aaPredicted RBP12.38□□□□□ -0.43
CAPN1-225ENST00000533704 ANKLE1Q8NAG6 615 aa12.38□□□□□ -0.43
CAPN1-225ENST00000533704 KIFC2Q96AC6 838 aa12.38□□□□□ -0.43
CAPN1-225ENST00000533704 DIAPH3Q9NSV4 1193 aa12.38□□□□□ -0.43
CAPN1-225ENST00000533704 SLC5A4Q9NY91 659 aa12.38□□□□□ -0.43
CAPN1-225ENST00000533704 OGDHLQ9ULD0 1010 aa12.38□□□□□ -0.43
CAPN1-225ENST00000533704 ADAMTS5Q9UNA0 930 aa12.38□□□□□ -0.43
CAPN1-225ENST00000533704 STX8Q9UNK0 236 aa12.38□□□□□ -0.43
CAPN1-225ENST00000533704 NR2E3Q9Y5X4 410 aa12.38□□□□□ -0.43
CAPN1-225ENST00000533704 LAMA4Q16363 1823 aa12.38□□□□□ -0.43
CAPN1-225ENST00000533704 PLIN4Q96Q06 1357 aa12.38□□□□□ -0.43
CAPN1-225ENST00000533704 CCDC171Q6TFL3 1326 aa12.37□□□□□ -0.43
CAPN1-225ENST00000533704 NMT2O60551 498 aa12.37□□□□□ -0.43
CAPN1-225ENST00000533704 ZBED4O75132 1171 aa12.37□□□□□ -0.43
CAPN1-225ENST00000533704 FGAP02671 866 aa12.37□□□□□ -0.43
CAPN1-225ENST00000533704 PGK2P07205 417 aa12.37□□□□□ -0.43
CAPN1-225ENST00000533704 HSPD1P10809 573 aaKnown RBP12.37□□□□□ -0.43
CAPN1-225ENST00000533704 BMP3P12645 472 aa12.37□□□□□ -0.43
CAPN1-225ENST00000533704 SDSP20132 328 aa12.37□□□□□ -0.43
CAPN1-225ENST00000533704 KCTD2Q14681 263 aa12.37□□□□□ -0.43
CAPN1-225ENST00000533704 SNRNP48Q6IEG0 339 aaKnown RBP12.37□□□□□ -0.43
CAPN1-225ENST00000533704 CWC27Q6UX04 472 aaKnown RBP12.37□□□□□ -0.43
CAPN1-225ENST00000533704 RIOX2Q8IUF8 465 aa12.37□□□□□ -0.43
CAPN1-225ENST00000533704 NBPF3Q9H094 633 aa12.37□□□□□ -0.43
CAPN1-225ENST00000533704 C11orf49Q9H6J7 331 aa12.37□□□□□ -0.43
CAPN1-225ENST00000533704 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms