RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 FBXO28Q9NVF7 368 aa21.3■■□□□ 1
PCF11-206ENST00000533018 ZBTB47Q9UFB7 747 aaPredicted RBP21.3■■□□□ 1
PCF11-206ENST00000533018 A0A1W2PPC1 479 aa21.29■■□□□ 1
PCF11-206ENST00000533018 M0R2C6 588 aa21.29■■□□□ 1
PCF11-206ENST00000533018 COBLO75128 1261 aa21.29■■□□□ 1
PCF11-206ENST00000533018 SLC25A27O95847 323 aa21.29■■□□□ 1
PCF11-206ENST00000533018 COL6A1P12109 1028 aa21.29■■□□□ 1
PCF11-206ENST00000533018 FCER1AP12319 257 aa21.29■■□□□ 1
PCF11-206ENST00000533018 SENP6Q9GZR1 1112 aaPredicted RBP21.29■■□□□ 1
PCF11-206ENST00000533018 TTC41PQ6P2S7 1318 aa21.29■■□□□ 1
PCF11-206ENST00000533018 ZNF236Q9UL36 1845 aa21.28■■□□□ 1
PCF11-206ENST00000533018 MYCNP04198 464 aaPredicted RBP21.28■■□□□ 1
PCF11-206ENST00000533018 RASA1P20936 1047 aa21.28■■□□□ 1
PCF11-206ENST00000533018 OLFML2BQ68BL8 750 aa21.28■■□□□ 1
PCF11-206ENST00000533018 ZNF444Q8N0Y2 327 aaPredicted RBP21.28■■□□□ 1
PCF11-206ENST00000533018 TRPV1Q8NER1 839 aa21.28■■□□□ 1
PCF11-206ENST00000533018 FSD1Q9BTV5 496 aa21.28■■□□□ 1
PCF11-206ENST00000533018 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.28■■□□□ 1
PCF11-206ENST00000533018 ZNF287Q9HBT7 754 aa21.28■■□□□ 1
PCF11-206ENST00000533018 PATL2C9JE40 543 aaKnown RBP21.27■■□□□ 1
PCF11-206ENST00000533018 PRDM1O75626 825 aa21.27■■□□□ 1
PCF11-206ENST00000533018 LRRC26Q2I0M4 334 aa21.27■■□□□ 1
PCF11-206ENST00000533018 ANO1Q5XXA6 986 aa21.27■■□□□ 1
PCF11-206ENST00000533018 ABRAQ8N0Z2 381 aa21.27■■□□□ 1
PCF11-206ENST00000533018 MMP19Q99542 508 aa21.27■■□□□ 1
PCF11-206ENST00000533018 NACAP1Q9BZK3 213 aa21.27■■□□□ 1
PCF11-206ENST00000533018 EPB41L4AQ9HCS5 686 aaPredicted RBP21.27■■□□□ 1
PCF11-206ENST00000533018 CLIP2Q9UDT6 1046 aa21.27■■□□□ 1
PCF11-206ENST00000533018 PPP1R9AQ9ULJ8 1098 aa21.27■■□□□ 1
PCF11-206ENST00000533018 MYH4Q9Y623 1939 aa21.27■■□□□ 1
PCF11-206ENST00000533018 VWA5AO00534 786 aa21.26■□□□□ 0.99
PCF11-206ENST00000533018 CYBAP13498 195 aa21.26■□□□□ 0.99
PCF11-206ENST00000533018 STAT3P40763 770 aa21.26■□□□□ 0.99
PCF11-206ENST00000533018 MAGEA10P43363 369 aaPredicted RBP21.26■□□□□ 0.99
PCF11-206ENST00000533018 IFNL3Q8IZI9 196 aa21.26■□□□□ 0.99
PCF11-206ENST00000533018 OTUD7AQ8TE49 926 aaPredicted RBP21.26■□□□□ 0.99
PCF11-206ENST00000533018 NUP88Q99567 741 aaPredicted RBP21.26■□□□□ 0.99
PCF11-206ENST00000533018 GDF15Q99988 308 aa21.26■□□□□ 0.99
PCF11-206ENST00000533018 ADAMTS5Q9UNA0 930 aa21.26■□□□□ 0.99
PCF11-206ENST00000533018 F5H6K3 240 aa21.25■□□□□ 0.99
PCF11-206ENST00000533018 MX1P20591 662 aa21.25■□□□□ 0.99
PCF11-206ENST00000533018 SLC4A3P48751 1232 aa21.25■□□□□ 0.99
PCF11-206ENST00000533018 ATN1P54259 1190 aaPredicted RBP21.25■□□□□ 0.99
PCF11-206ENST00000533018 RRP1P56182 461 aaKnown RBP21.25■□□□□ 0.99
PCF11-206ENST00000533018 KLRC3Q07444 240 aa21.25■□□□□ 0.99
PCF11-206ENST00000533018 KCTD2Q14681 263 aa21.25■□□□□ 0.99
PCF11-206ENST00000533018 PRAMEF19Q5SWL8 479 aa21.25■□□□□ 0.99
PCF11-206ENST00000533018 GJC2Q5T442 439 aaPredicted RBP21.25■□□□□ 0.99
PCF11-206ENST00000533018 PI4K2BQ8TCG2 481 aa21.25■□□□□ 0.99
PCF11-206ENST00000533018 MAML3Q96JK9 1138 aa21.25■□□□□ 0.99
PCF11-206ENST00000533018 SEC62Q99442 399 aaKnown RBP21.25■□□□□ 0.99
PCF11-206ENST00000533018 NYAP2Q9P242 653 aa21.25■□□□□ 0.99
PCF11-206ENST00000533018 CTDP1Q9Y5B0 961 aaPredicted RBP21.25■□□□□ 0.99
PCF11-206ENST00000533018 GREB1LQ9C091 1923 aaPredicted RBP21.25■□□□□ 0.99
PCF11-206ENST00000533018 ROBO3Q96MS0 1386 aa21.24■□□□□ 0.99
PCF11-206ENST00000533018 PGK2P07205 417 aa21.24■□□□□ 0.99
PCF11-206ENST00000533018 BMP8BP34820 402 aa21.24■□□□□ 0.99
PCF11-206ENST00000533018 RIOX2Q8IUF8 465 aa21.24■□□□□ 0.99
PCF11-206ENST00000533018 ARRDC4Q8NCT1 418 aa21.24■□□□□ 0.99
PCF11-206ENST00000533018 SLF1Q9BQI6 1058 aa21.24■□□□□ 0.99
PCF11-206ENST00000533018 UBE2OQ9C0C9 1292 aaKnown RBP21.24■□□□□ 0.99
PCF11-206ENST00000533018 PLXNA1Q9UIW2 1896 aa21.24■□□□□ 0.99
PCF11-206ENST00000533018 KBTBD13C9JR72 458 aa21.23■□□□□ 0.99
PCF11-206ENST00000533018 DNM1LO00429 736 aa21.23■□□□□ 0.99
PCF11-206ENST00000533018 SEPT4O43236 478 aa21.23■□□□□ 0.99
PCF11-206ENST00000533018 NDUFB10O96000 172 aa21.23■□□□□ 0.99
PCF11-206ENST00000533018 IGHA2P01877 340 aa21.23■□□□□ 0.99
PCF11-206ENST00000533018 SLC3A2P08195 630 aaKnown RBP21.23■□□□□ 0.99
PCF11-206ENST00000533018 ANKRD45Q5TZF3 282 aa21.23■□□□□ 0.99
PCF11-206ENST00000533018 LRCH3Q96II8 777 aa21.23■□□□□ 0.99
PCF11-206ENST00000533018 NAPBQ9H115 298 aa21.23■□□□□ 0.99
PCF11-206ENST00000533018 SMCHD1A6NHR9 2005 aa21.22■□□□□ 0.99
PCF11-206ENST00000533018 SOX1O00570 391 aaPredicted RBP21.22■□□□□ 0.99
PCF11-206ENST00000533018 TSPY3P0CV98 308 aa21.22■□□□□ 0.99
PCF11-206ENST00000533018 TSPY8P0CW00 308 aa21.22■□□□□ 0.99
PCF11-206ENST00000533018 COPB2P35606 906 aa21.22■□□□□ 0.99
PCF11-206ENST00000533018 PDE4BQ07343 736 aa21.22■□□□□ 0.99
PCF11-206ENST00000533018 CEP95Q96GE4 821 aa21.22■□□□□ 0.99
PCF11-206ENST00000533018 CRBNQ96SW2 442 aa21.22■□□□□ 0.99
PCF11-206ENST00000533018 ZNF214Q9UL59 606 aaPredicted RBP21.22■□□□□ 0.99
PCF11-206ENST00000533018 ISY1Q9ULR0 285 aaKnown RBP21.22■□□□□ 0.99
PCF11-206ENST00000533018 MDM2Q00987 491 aaPredicted RBP21.21■□□□□ 0.99
PCF11-206ENST00000533018 SNRNP48Q6IEG0 339 aaKnown RBP21.21■□□□□ 0.99
PCF11-206ENST00000533018 PRPF38AQ8NAV1 312 aaKnown RBP21.21■□□□□ 0.99
PCF11-206ENST00000533018 KIFC2Q96AC6 838 aa21.21■□□□□ 0.99
PCF11-206ENST00000533018 ZBED4O75132 1171 aa21.2■□□□□ 0.98
PCF11-206ENST00000533018 TTLL1O95922 423 aa21.2■□□□□ 0.98
PCF11-206ENST00000533018 FAM47AQ5JRC9 791 aa21.2■□□□□ 0.98
PCF11-206ENST00000533018 ZMYM1Q5SVZ6 1142 aa21.2■□□□□ 0.98
PCF11-206ENST00000533018 TDHQ8IZJ6 230 aa21.2■□□□□ 0.98
PCF11-206ENST00000533018 CPXCR1Q8N123 301 aa21.2■□□□□ 0.98
PCF11-206ENST00000533018 LRRC47Q8N1G4 583 aaKnown RBP21.2■□□□□ 0.98
PCF11-206ENST00000533018 REPS2Q8NFH8 660 aa21.2■□□□□ 0.98
PCF11-206ENST00000533018 DDX11Q96FC9 970 aa21.2■□□□□ 0.98
PCF11-206ENST00000533018 TEX13BQ9BXU2 312 aa21.2■□□□□ 0.98
PCF11-206ENST00000533018 MTMR4Q9NYA4 1195 aa21.2■□□□□ 0.98
PCF11-206ENST00000533018 PRKAG2Q9UGJ0 569 aa21.2■□□□□ 0.98
PCF11-206ENST00000533018 IGKV6D-41A0A0C4DH26 115 aa21.19■□□□□ 0.98
PCF11-206ENST00000533018 TFAP4Q01664 338 aa21.19■□□□□ 0.98
PCF11-206ENST00000533018 PPARAQ07869 468 aa21.19■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms