RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 TNPO2O14787 897 aaKnown RBP23.42■■□□□ 1.34
CPSF1-209ENST00000532725 CASC1Q6TDU7 716 aa23.42■■□□□ 1.34
CPSF1-209ENST00000532725 ATG4CQ96DT6 458 aa23.42■■□□□ 1.34
CPSF1-209ENST00000532725 TMEM47Q9BQJ4 181 aa23.42■■□□□ 1.34
CPSF1-209ENST00000532725 PTCH2Q9Y6C5 1203 aa23.42■■□□□ 1.34
CPSF1-209ENST00000532725 MYH4Q9Y623 1939 aa23.41■■□□□ 1.34
CPSF1-209ENST00000532725 TOP1P11387 765 aaKnown RBP23.41■■□□□ 1.34
CPSF1-209ENST00000532725 NECTIN1Q15223 517 aa23.41■■□□□ 1.34
CPSF1-209ENST00000532725 MB21D1Q8N884 522 aa23.41■■□□□ 1.34
CPSF1-209ENST00000532725 ANKS1AQ92625 1134 aa23.41■■□□□ 1.34
CPSF1-209ENST00000532725 GMCL1Q96IK5 515 aa23.41■■□□□ 1.34
CPSF1-209ENST00000532725 ZKSCAN3Q9BRR0 538 aa23.41■■□□□ 1.34
CPSF1-209ENST00000532725 PORCNQ9H237 461 aa23.41■■□□□ 1.34
CPSF1-209ENST00000532725 ANO2Q9NQ90 1003 aa23.41■■□□□ 1.34
CPSF1-209ENST00000532725 GJD2Q9UKL4 321 aa23.41■■□□□ 1.34
CPSF1-209ENST00000532725 PPP1R9AQ9ULJ8 1098 aa23.41■■□□□ 1.34
CPSF1-209ENST00000532725 GABRQQ9UN88 632 aa23.41■■□□□ 1.34
CPSF1-209ENST00000532725 LAMA4Q16363 1823 aa23.4■■□□□ 1.34
CPSF1-209ENST00000532725 BMP3P12645 472 aa23.4■■□□□ 1.34
CPSF1-209ENST00000532725 MCCP23508 829 aa23.4■■□□□ 1.34
CPSF1-209ENST00000532725 PRKCZQ05513 592 aa23.4■■□□□ 1.34
CPSF1-209ENST00000532725 DGKHQ86XP1 1220 aa23.4■■□□□ 1.34
CPSF1-209ENST00000532725 COA7Q96BR5 231 aa23.4■■□□□ 1.34
CPSF1-209ENST00000532725 DOCK3Q8IZD9 2030 aa23.4■■□□□ 1.34
CPSF1-209ENST00000532725 HTTP42858 3142 aa23.39■■□□□ 1.34
CPSF1-209ENST00000532725 E7EWF7 191 aa23.39■■□□□ 1.33
CPSF1-209ENST00000532725 VWA5AO00534 786 aa23.39■■□□□ 1.33
CPSF1-209ENST00000532725 MAPK4P31152 587 aa23.39■■□□□ 1.33
CPSF1-209ENST00000532725 CCNA1P78396 465 aa23.39■■□□□ 1.33
CPSF1-209ENST00000532725 CCDC178Q5BJE1 867 aa23.39■■□□□ 1.33
CPSF1-209ENST00000532725 STOX1Q6ZVD7 989 aa23.39■■□□□ 1.33
CPSF1-209ENST00000532725 IQCA1Q86XH1 822 aa23.39■■□□□ 1.33
CPSF1-209ENST00000532725 PRPF38AQ8NAV1 312 aaKnown RBP23.39■■□□□ 1.33
CPSF1-209ENST00000532725 ZSCAN10Q96SZ4 725 aaPredicted RBP23.39■■□□□ 1.33
CPSF1-209ENST00000532725 SLF1Q9BQI6 1058 aa23.39■■□□□ 1.33
CPSF1-209ENST00000532725 FEM1BQ9UK73 627 aa23.39■■□□□ 1.33
CPSF1-209ENST00000532725 SLC1A4P43007 532 aa23.38■■□□□ 1.33
CPSF1-209ENST00000532725 FLT3LGP49771 235 aa23.38■■□□□ 1.33
CPSF1-209ENST00000532725 IFFO2Q5TF58 517 aa23.38■■□□□ 1.33
CPSF1-209ENST00000532725 SAMD1Q6SPF0 538 aaPredicted RBP23.38■■□□□ 1.33
CPSF1-209ENST00000532725 CYB5R4Q7L1T6 521 aa23.38■■□□□ 1.33
CPSF1-209ENST00000532725 SPATC1LQ9H0A9 340 aa23.38■■□□□ 1.33
CPSF1-209ENST00000532725 MGAMO43451 1857 aa23.38■■□□□ 1.33
CPSF1-209ENST00000532725 TRDNQ13061 729 aa23.37■■□□□ 1.33
CPSF1-209ENST00000532725 TMEM132BQ14DG7 1078 aa23.37■■□□□ 1.33
CPSF1-209ENST00000532725 REPS2Q8NFH8 660 aa23.37■■□□□ 1.33
CPSF1-209ENST00000532725 CHMP4CQ96CF2 233 aa23.37■■□□□ 1.33
CPSF1-209ENST00000532725 MOV10L1Q9BXT6 1211 aaKnown RBP23.37■■□□□ 1.33
CPSF1-209ENST00000532725 CCDC85CA6NKD9 419 aa23.36■■□□□ 1.33
CPSF1-209ENST00000532725 TMEM232C9JQI7 657 aa23.36■■□□□ 1.33
CPSF1-209ENST00000532725 SLC27A2O14975 620 aa23.36■■□□□ 1.33
CPSF1-209ENST00000532725 PLA2G6O60733 806 aa23.36■■□□□ 1.33
CPSF1-209ENST00000532725 IRF5Q13568 498 aa23.36■■□□□ 1.33
CPSF1-209ENST00000532725 CREB3L3Q68CJ9 461 aa23.36■■□□□ 1.33
CPSF1-209ENST00000532725 GPR142Q7Z601 462 aa23.36■■□□□ 1.33
CPSF1-209ENST00000532725 PLEKHH3Q7Z736 793 aa23.36■■□□□ 1.33
CPSF1-209ENST00000532725 CCAR1Q8IX12 1150 aaKnown RBP23.36■■□□□ 1.33
CPSF1-209ENST00000532725 ENAHQ8N8S7 591 aaPredicted RBP23.36■■□□□ 1.33
CPSF1-209ENST00000532725 NCOA7Q8NI08 942 aa23.36■■□□□ 1.33
CPSF1-209ENST00000532725 RAET1EQ8TD07 263 aa23.36■■□□□ 1.33
CPSF1-209ENST00000532725 KCTD1Q719H9 257 aa23.35■■□□□ 1.33
CPSF1-209ENST00000532725 RASGRP2Q7LDG7 609 aa23.35■■□□□ 1.33
CPSF1-209ENST00000532725 CHURC1Q8WUH1 139 aa23.35■■□□□ 1.33
CPSF1-209ENST00000532725 DCAF4Q8WV16 495 aa23.35■■□□□ 1.33
CPSF1-209ENST00000532725 ARMC5Q96C12 935 aa23.35■■□□□ 1.33
CPSF1-209ENST00000532725 PARP14Q460N5 1801 aa23.34■■□□□ 1.33
CPSF1-209ENST00000532725 SEC23AQ15436 765 aa23.34■■□□□ 1.33
CPSF1-209ENST00000532725 MORN1Q5T089 497 aa23.34■■□□□ 1.33
CPSF1-209ENST00000532725 SHCBP1Q8NEM2 672 aa23.34■■□□□ 1.33
CPSF1-209ENST00000532725 USP6NLQ92738 828 aa23.34■■□□□ 1.33
CPSF1-209ENST00000532725 KIFC2Q96AC6 838 aa23.34■■□□□ 1.33
CPSF1-209ENST00000532725 ZNF214Q9UL59 606 aaPredicted RBP23.34■■□□□ 1.33
CPSF1-209ENST00000532725 MTMR7Q9Y216 660 aa23.34■■□□□ 1.33
CPSF1-209ENST00000532725 TNKSO95271 1327 aa23.33■■□□□ 1.33
CPSF1-209ENST00000532725 SNHG28P0DPA3 235 aa23.33■■□□□ 1.33
CPSF1-209ENST00000532725 PDHBP11177 359 aa23.33■■□□□ 1.33
CPSF1-209ENST00000532725 STAT3P40763 770 aa23.33■■□□□ 1.33
CPSF1-209ENST00000532725 STAT2P52630 851 aa23.33■■□□□ 1.33
CPSF1-209ENST00000532725 PLS1Q14651 629 aa23.33■■□□□ 1.33
CPSF1-209ENST00000532725 SLC9C1Q4G0N8 1177 aa23.33■■□□□ 1.33
CPSF1-209ENST00000532725 NBPF11Q86T75 865 aa23.33■■□□□ 1.33
CPSF1-209ENST00000532725 FAM160B2Q86V87 743 aa23.33■■□□□ 1.33
CPSF1-209ENST00000532725 MB21D2Q8IYB1 491 aaPredicted RBP23.33■■□□□ 1.33
CPSF1-209ENST00000532725 NUDT12Q9BQG2 462 aa23.33■■□□□ 1.33
CPSF1-209ENST00000532725 UBAC1Q9BSL1 405 aa23.33■■□□□ 1.33
CPSF1-209ENST00000532725 SLC38A10Q9HBR0 1119 aa23.33■■□□□ 1.33
CPSF1-209ENST00000532725 ATP2A1O14983 1001 aa23.32■■□□□ 1.32
CPSF1-209ENST00000532725 ADCY3O60266 1144 aa23.32■■□□□ 1.32
CPSF1-209ENST00000532725 ZBED4O75132 1171 aa23.32■■□□□ 1.32
CPSF1-209ENST00000532725 ERCC3P19447 782 aa23.32■■□□□ 1.32
CPSF1-209ENST00000532725 PTPREP23469 700 aa23.32■■□□□ 1.32
CPSF1-209ENST00000532725 GRK4P32298 578 aa23.32■■□□□ 1.32
CPSF1-209ENST00000532725 TTBK2Q6IQ55 1244 aa23.32■■□□□ 1.32
CPSF1-209ENST00000532725 BTNL9Q6UXG8 535 aa23.32■■□□□ 1.32
CPSF1-209ENST00000532725 RALYLQ86SE5 291 aaKnown RBP23.32■■□□□ 1.32
CPSF1-209ENST00000532725 RIOX2Q8IUF8 465 aa23.32■■□□□ 1.32
CPSF1-209ENST00000532725 PXYLP1Q8TE99 480 aa23.32■■□□□ 1.32
CPSF1-209ENST00000532725 SH3TC2Q8TF17 1288 aa23.32■■□□□ 1.32
CPSF1-209ENST00000532725 A0A0G2JMZ2 1700 aa23.31■■□□□ 1.32
CPSF1-209ENST00000532725 CAPN15O75808 1086 aa23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms