RNA–Protein interactions for RNA: ENST00000525257.1

USP47-205, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 4

Gene USP47, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-205ENST00000525257 USP17L12C9JPN9 530 aa28.85■■■□□ 2.21
USP47-205ENST00000525257 USP17L21D6R901 530 aa28.85■■■□□ 2.21
USP47-205ENST00000525257 FCER1AP12319 257 aa28.85■■■□□ 2.21
USP47-205ENST00000525257 TMEM132BQ14DG7 1078 aa28.85■■■□□ 2.21
USP47-205ENST00000525257 ZNFX1Q9P2E3 1918 aaKnown RBP28.84■■■□□ 2.21
USP47-205ENST00000525257 C16orf86Q6ZW13 317 aa28.84■■■□□ 2.21
USP47-205ENST00000525257 HAUS7Q99871 368 aa28.84■■■□□ 2.21
USP47-205ENST00000525257 PRDM5Q9NQX1 630 aaPredicted RBP28.84■■■□□ 2.21
USP47-205ENST00000525257 UNC80Q8N2C7 3258 aa28.83■■■□□ 2.21
USP47-205ENST00000525257 EEF2P13639 858 aaKnown RBP28.83■■■□□ 2.21
USP47-205ENST00000525257 TRIM60Q495X7 471 aa28.83■■■□□ 2.21
USP47-205ENST00000525257 DDRGK1Q96HY6 314 aa28.83■■■□□ 2.21
USP47-205ENST00000525257 FBXO28Q9NVF7 368 aa28.83■■■□□ 2.21
USP47-205ENST00000525257 SLC4A4Q9Y6R1 1079 aa28.83■■■□□ 2.21
USP47-205ENST00000525257 POTEB2H3BUK9 544 aa28.82■■■□□ 2.2
USP47-205ENST00000525257 ADCYAP1R1P41586 468 aa28.82■■■□□ 2.2
USP47-205ENST00000525257 LRRC41Q15345 812 aa28.82■■■□□ 2.2
USP47-205ENST00000525257 FAM47AQ5JRC9 791 aa28.82■■■□□ 2.2
USP47-205ENST00000525257 FERMT2Q96AC1 680 aa28.82■■■□□ 2.2
USP47-205ENST00000525257 FAM161BQ96MY7 647 aa28.82■■■□□ 2.2
USP47-205ENST00000525257 RAD21O60216 631 aa28.81■■■□□ 2.2
USP47-205ENST00000525257 SLC25A27O95847 323 aa28.81■■■□□ 2.2
USP47-205ENST00000525257 UBE3CQ15386 1083 aa28.81■■■□□ 2.2
USP47-205ENST00000525257 MMP19Q99542 508 aa28.81■■■□□ 2.2
USP47-205ENST00000525257 PGK2P07205 417 aa28.8■■■□□ 2.2
USP47-205ENST00000525257 SNX17Q15036 470 aa28.8■■■□□ 2.2
USP47-205ENST00000525257 FAM109BQ6ICB4 259 aaPredicted RBP28.8■■■□□ 2.2
USP47-205ENST00000525257 GUCD1Q96NT3 240 aa28.8■■■□□ 2.2
USP47-205ENST00000525257 KANSL2Q9H9L4 492 aa28.8■■■□□ 2.2
USP47-205ENST00000525257 PLXNA1Q9UIW2 1896 aa28.8■■■□□ 2.2
USP47-205ENST00000525257 CTR9Q6PD62 1173 aa28.79■■■□□ 2.2
USP47-205ENST00000525257 PUS7LQ9H0K6 701 aaKnown RBP28.79■■■□□ 2.2
USP47-205ENST00000525257 GOPCQ9HD26 462 aa28.79■■■□□ 2.2
USP47-205ENST00000525257 ADAMTS5Q9UNA0 930 aa28.79■■■□□ 2.2
USP47-205ENST00000525257 SMCHD1A6NHR9 2005 aa28.78■■■□□ 2.2
USP47-205ENST00000525257 SHHQ15465 462 aa28.78■■■□□ 2.2
USP47-205ENST00000525257 FAM83BQ5T0W9 1011 aa28.78■■■□□ 2.2
USP47-205ENST00000525257 RIOX2Q8IUF8 465 aa28.78■■■□□ 2.2
USP47-205ENST00000525257 BADQ92934 168 aa28.78■■■□□ 2.2
USP47-205ENST00000525257 XPNPEP3Q9NQH7 507 aa28.78■■■□□ 2.2
USP47-205ENST00000525257 PDLIM7Q9NR12 457 aa28.78■■■□□ 2.2
USP47-205ENST00000525257 VWA5AO00534 786 aa28.77■■■□□ 2.2
USP47-205ENST00000525257 KCTD2Q14681 263 aa28.77■■■□□ 2.2
USP47-205ENST00000525257 C9orf50Q5SZB4 431 aa28.77■■■□□ 2.2
USP47-205ENST00000525257 ZSCAN25Q6NSZ9 544 aa28.77■■■□□ 2.2
USP47-205ENST00000525257 PPP1R9AQ9ULJ8 1098 aa28.77■■■□□ 2.2
USP47-205ENST00000525257 RARBP10826 455 aa28.76■■■□□ 2.19
USP47-205ENST00000525257 STAT3P40763 770 aa28.76■■■□□ 2.19
USP47-205ENST00000525257 ZNF697Q5TEC3 545 aa28.76■■■□□ 2.19
USP47-205ENST00000525257 SH3RF1Q7Z6J0 888 aa28.76■■■□□ 2.19
USP47-205ENST00000525257 TINF2Q9BSI4 451 aa28.76■■■□□ 2.19
USP47-205ENST00000525257 NRBP1Q9UHY1 535 aa28.76■■■□□ 2.19
USP47-205ENST00000525257 GREB1LQ9C091 1923 aaPredicted RBP28.75■■■□□ 2.19
USP47-205ENST00000525257 SMARCA5O60264 1052 aaPredicted RBP28.75■■■□□ 2.19
USP47-205ENST00000525257 TAL1P17542 331 aaPredicted RBP28.75■■■□□ 2.19
USP47-205ENST00000525257 LRRCC1Q9C099 1032 aa28.75■■■□□ 2.19
USP47-205ENST00000525257 ARPP21Q9UBL0 812 aaPredicted RBP28.75■■■□□ 2.19
USP47-205ENST00000525257 ZNF214Q9UL59 606 aaPredicted RBP28.75■■■□□ 2.19
USP47-205ENST00000525257 TRIM43BA6NCK2 446 aa28.74■■■□□ 2.19
USP47-205ENST00000525257 PGK1P00558 417 aa28.74■■■□□ 2.19
USP47-205ENST00000525257 ZNF792Q3KQV3 632 aa28.74■■■□□ 2.19
USP47-205ENST00000525257 STK11IPQ8N1F8 1099 aa28.74■■■□□ 2.19
USP47-205ENST00000525257 REPS2Q8NFH8 660 aa28.74■■■□□ 2.19
USP47-205ENST00000525257 TRIM43Q96BQ3 446 aaPredicted RBP28.74■■■□□ 2.19
USP47-205ENST00000525257 GNL3Q9BVP2 549 aaKnown RBP eCLIP28.74■■■□□ 2.19
USP47-205ENST00000525257 CHMP4BQ9H444 224 aaKnown RBP28.74■■■□□ 2.19
USP47-205ENST00000525257 PHF24Q9UPV7 400 aa28.74■■■□□ 2.19
USP47-205ENST00000525257 TLE2Q04725 743 aa28.73■■■□□ 2.19
USP47-205ENST00000525257 C1orf53Q5VUE5 145 aa28.73■■■□□ 2.19
USP47-205ENST00000525257 DIEXFQ68CQ4 756 aaKnown RBP28.73■■■□□ 2.19
USP47-205ENST00000525257 NUP88Q99567 741 aaPredicted RBP28.73■■■□□ 2.19
USP47-205ENST00000525257 DIS3Q9Y2L1 958 aaKnown RBP28.73■■■□□ 2.19
USP47-205ENST00000525257 COPB2P35606 906 aa28.72■■■□□ 2.19
USP47-205ENST00000525257 RNF180Q86T96 592 aa28.72■■■□□ 2.19
USP47-205ENST00000525257 LENG1Q96BZ8 264 aaPredicted RBP28.72■■■□□ 2.19
USP47-205ENST00000525257 STRBPQ96SI9 672 aaKnown RBP28.71■■■□□ 2.19
USP47-205ENST00000525257 SLF1Q9BQI6 1058 aa28.71■■■□□ 2.19
USP47-205ENST00000525257 ROBO3Q96MS0 1386 aa28.71■■■□□ 2.19
USP47-205ENST00000525257 ZNF865P0CJ78 1059 aaPredicted RBP28.7■■■□□ 2.18
USP47-205ENST00000525257 RASA1P20936 1047 aa28.7■■■□□ 2.18
USP47-205ENST00000525257 PHF6Q8IWS0 365 aaKnown RBP eCLIP28.7■■■□□ 2.18
USP47-205ENST00000525257 A0A1W2PQ45 241 aaPredicted RBP28.69■■■□□ 2.18
USP47-205ENST00000525257 A0A1W2PQY0 241 aa28.69■■■□□ 2.18
USP47-205ENST00000525257 AKR1A1P14550 325 aa28.69■■■□□ 2.18
USP47-205ENST00000525257 SBK1Q52WX2 424 aa28.69■■■□□ 2.18
USP47-205ENST00000525257 SNRNP48Q6IEG0 339 aaKnown RBP28.69■■■□□ 2.18
USP47-205ENST00000525257 MKNK2Q9HBH9 465 aa28.69■■■□□ 2.18
USP47-205ENST00000525257 CNPY2Q9Y2B0 182 aa28.69■■■□□ 2.18
USP47-205ENST00000525257 EYSQ5T1H1 3165 aa28.69■■■□□ 2.18
USP47-205ENST00000525257 GSG1L2A8MUP6 293 aa28.68■■■□□ 2.18
USP47-205ENST00000525257 MINDY4BA8MYZ0 360 aa28.68■■■□□ 2.18
USP47-205ENST00000525257 CLTBP09497 229 aa28.68■■■□□ 2.18
USP47-205ENST00000525257 ITGB8P26012 769 aa28.68■■■□□ 2.18
USP47-205ENST00000525257 TEX13BQ9BXU2 312 aa28.68■■■□□ 2.18
USP47-205ENST00000525257 ECHDC1Q9NTX5 307 aa28.68■■■□□ 2.18
USP47-205ENST00000525257 TACC3Q9Y6A5 838 aa28.68■■■□□ 2.18
USP47-205ENST00000525257 F5H6K3 240 aa28.67■■■□□ 2.18
USP47-205ENST00000525257 PQBP1O60828 265 aaKnown RBP28.67■■■□□ 2.18
USP47-205ENST00000525257 SLC4A3P48751 1232 aa28.67■■■□□ 2.18
USP47-205ENST00000525257 KLRC3Q07444 240 aa28.67■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms