RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 WDHD1O75717 1129 aaPredicted RBP3.94□□□□□ -1.78
USP53-205ENST00000509769 PAK3O75914 559 aaPredicted RBP3.94□□□□□ -1.78
USP53-205ENST00000509769 CTNNA2P26232 953 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 CCT4P50991 539 aaKnown RBP3.94□□□□□ -1.78
USP53-205ENST00000509769 SKOR1P84550 965 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 PLS1Q14651 629 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 TMTC1Q8IUR5 882 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 CSGALNACT2Q8N6G5 542 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 CCDC89Q8N998 374 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 TNPO1Q92973 898 aaKnown RBP3.94□□□□□ -1.78
USP53-205ENST00000509769 PHACTR3Q96KR7 559 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 CYTH2Q99418 400 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 TRIM39Q9HCM9 518 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 DDX21Q9NR30 783 aaKnown RBP eCLIP3.94□□□□□ -1.78
USP53-205ENST00000509769 PDRG1Q9NUG6 133 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 HACD3Q9P035 362 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 MID2Q9UJV3 735 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 DDX41Q9UJV9 622 aaKnown RBP3.94□□□□□ -1.78
USP53-205ENST00000509769 UTP11Q9Y3A2 253 aaKnown RBP3.94□□□□□ -1.78
USP53-205ENST00000509769 HGSO14964 777 aaPredicted RBP3.94□□□□□ -1.78
USP53-205ENST00000509769 ZEB2O60315 1214 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 TBC1D12O60347 775 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 CLASP2O75122 1294 aaKnown RBP3.94□□□□□ -1.78
USP53-205ENST00000509769 PRDM1O75626 825 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 RASSF9O75901 435 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 SASH1O94885 1247 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 GJA8P48165 433 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 ARPC4P59998 168 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 ARHGAP4P98171 946 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 TFAP4Q01664 338 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 EN1Q05925 392 aaPredicted RBP3.94□□□□□ -1.78
USP53-205ENST00000509769 FCHO2Q0JRZ9 810 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 KRT71Q3SY84 523 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 CFAP221Q4G0U5 840 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 CEP78Q5JTW2 689 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 RBM20Q5T481 1227 aaKnown RBP3.94□□□□□ -1.78
USP53-205ENST00000509769 CEP85Q6P2H3 762 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 FAM177A1Q8N128 213 aaPredicted RBP3.94□□□□□ -1.78
USP53-205ENST00000509769 ANKRD35Q8N283 1001 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 PNISRQ8TF01 805 aaKnown RBP3.94□□□□□ -1.78
USP53-205ENST00000509769 ASZ1Q8WWH4 475 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 FERMT2Q96AC1 680 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 NACAP1Q9BZK3 213 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 TRPC7Q9HCX4 862 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 PRXQ9BXM0 1461 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 ARHGEF10O15013 1369 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 CCDC151A5D8V7 595 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 HNRNPCL2B2RXH8 293 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 GOLGA8TH3BQL2 631 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 MYO1CO00159 1063 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 NOP56O00567 594 aaKnown RBP3.94□□□□□ -1.78
USP53-205ENST00000509769 TTI1O43156 1089 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 DCTN3O75935 186 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 STK10O94804 968 aaKnown RBP3.94□□□□□ -1.78
USP53-205ENST00000509769 GOLGA8HP0CJ92 632 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 MCF2P10911 925 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 POLE2P56282 527 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 SNAP25P60880 206 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 MRPS15P82914 257 aaKnown RBP3.94□□□□□ -1.78
USP53-205ENST00000509769 GRIN1Q05586 938 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 EPS8Q12929 822 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 MKRN3Q13064 507 aaKnown RBP3.94□□□□□ -1.78
USP53-205ENST00000509769 CEP55Q53EZ4 464 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 ATAD3BQ5T9A4 648 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 NUGGCQ68CJ6 796 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 KLC3Q6P597 504 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 TRIML1Q8N9V2 468 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 VTI1AQ96AJ9 217 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 GRAMD1AQ96CP6 724 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 CDCA5Q96FF9 252 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 CATSPER2Q96P56 530 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 CCDC28BQ9BUN5 200 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 UBE2OQ9C0C9 1292 aaKnown RBP3.94□□□□□ -1.78
USP53-205ENST00000509769 FANCEQ9HB96 536 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 ATP6V0A4Q9HBG4 840 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 STOML2Q9UJZ1 356 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 CARD8Q9Y2G2 431 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 ADGRB3O60242 1522 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 CCDC141Q6ZP82 1450 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 INSRP06213 1382 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 GNB5O14775 395 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 STRNO43815 780 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 RHOXF2BP0C7M4 288 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 KRT15P19012 456 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 ERCC5P28715 1186 aaPredicted RBP3.93□□□□□ -1.78
USP53-205ENST00000509769 AFMP43652 599 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 CTCFP49711 727 aaPredicted RBP3.93□□□□□ -1.78
USP53-205ENST00000509769 SNX16P57768 344 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 GUCY1B3Q02153 619 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 SF3A3Q12874 501 aaKnown RBP eCLIP3.93□□□□□ -1.78
USP53-205ENST00000509769 WTAPQ15007 396 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 HHATQ5VTY9 493 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 DAB2IPQ5VWQ8 1189 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 PPP1R2P3Q6NXS1 205 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 C8orf74Q6P047 294 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 EIF3CQ99613 913 aaKnown RBP3.93□□□□□ -1.78
USP53-205ENST00000509769 RHOXF2Q9BQY4 288 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 ZBED2Q9BTP6 218 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 VPS16Q9H269 839 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 SMARCAD1Q9H4L7 1026 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms