RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 RRP1P56182 461 aaKnown RBP9.62□□□□□ -0.87
SCN1A-207ENST00000507401 LCORLQ8N3X6 602 aa9.62□□□□□ -0.87
SCN1A-207ENST00000507401 NKX2-3Q8TAU0 364 aa9.62□□□□□ -0.87
SCN1A-207ENST00000507401 SH3TC2Q8TF17 1288 aa9.62□□□□□ -0.87
SCN1A-207ENST00000507401 EDC3Q96F86 508 aaKnown RBP9.62□□□□□ -0.87
SCN1A-207ENST00000507401 P2RX7Q99572 595 aaKnown RBP9.62□□□□□ -0.87
SCN1A-207ENST00000507401 SWAP70Q9UH65 585 aa9.62□□□□□ -0.87
SCN1A-207ENST00000507401 PCDHB15Q9Y5E8 787 aa9.62□□□□□ -0.87
SCN1A-207ENST00000507401 TTC41PQ6P2S7 1318 aa9.61□□□□□ -0.87
SCN1A-207ENST00000507401 GPR37O15354 613 aa9.61□□□□□ -0.87
SCN1A-207ENST00000507401 RRP9O43818 475 aaKnown RBP9.61□□□□□ -0.87
SCN1A-207ENST00000507401 FLT3LGP49771 235 aa9.61□□□□□ -0.87
SCN1A-207ENST00000507401 UBXN2AP68543 259 aa9.61□□□□□ -0.87
SCN1A-207ENST00000507401 IRX3P78415 501 aaPredicted RBP9.61□□□□□ -0.87
SCN1A-207ENST00000507401 PRKCZQ05513 592 aa9.61□□□□□ -0.87
SCN1A-207ENST00000507401 SLC4A8Q2Y0W8 1093 aa9.61□□□□□ -0.87
SCN1A-207ENST00000507401 LRRFIP1Q32MZ4 808 aaKnown RBP9.61□□□□□ -0.87
SCN1A-207ENST00000507401 KBTBD3Q8NAB2 608 aa9.61□□□□□ -0.87
SCN1A-207ENST00000507401 GPRC5AQ8NFJ5 357 aa9.61□□□□□ -0.87
SCN1A-207ENST00000507401 SDR42E1Q8WUS8 393 aa9.61□□□□□ -0.87
SCN1A-207ENST00000507401 KIAA1683Q9H0B3 1180 aa9.61□□□□□ -0.87
SCN1A-207ENST00000507401 ARMT1Q9H993 441 aa9.61□□□□□ -0.87
SCN1A-207ENST00000507401 GABRQQ9UN88 632 aa9.61□□□□□ -0.87
SCN1A-207ENST00000507401 ZSWIM8A7E2V4 1837 aa9.61□□□□□ -0.87
SCN1A-207ENST00000507401 USP17L15C9J2P7 530 aa9.6□□□□□ -0.87
SCN1A-207ENST00000507401 USP17L13C9JLJ4 530 aa9.6□□□□□ -0.87
SCN1A-207ENST00000507401 USP17L11C9JVI0 530 aa9.6□□□□□ -0.87
SCN1A-207ENST00000507401 USP17L18D6R9N7 530 aa9.6□□□□□ -0.87
SCN1A-207ENST00000507401 USP17L22D6RA61 530 aa9.6□□□□□ -0.87
SCN1A-207ENST00000507401 USP17L17D6RBQ6 530 aa9.6□□□□□ -0.87
SCN1A-207ENST00000507401 USP17L19D6RCP7 530 aa9.6□□□□□ -0.87
SCN1A-207ENST00000507401 USP17L20D6RJB6 530 aa9.6□□□□□ -0.87
SCN1A-207ENST00000507401 ADCY3O60266 1144 aa9.6□□□□□ -0.87
SCN1A-207ENST00000507401 MBD4O95243 580 aa9.6□□□□□ -0.87
SCN1A-207ENST00000507401 GJB1P08034 283 aa9.6□□□□□ -0.87
SCN1A-207ENST00000507401 ZFYP08048 801 aaPredicted RBP9.6□□□□□ -0.87
SCN1A-207ENST00000507401 HERVK_113P62684 666 aa9.6□□□□□ -0.87
SCN1A-207ENST00000507401 USP17L24Q0WX57 530 aa9.6□□□□□ -0.87
SCN1A-207ENST00000507401 RAB3GAP1Q15042 981 aa9.6□□□□□ -0.87
SCN1A-207ENST00000507401 SHROOM1Q2M3G4 852 aaPredicted RBP9.6□□□□□ -0.87
SCN1A-207ENST00000507401 C12orf60Q5U649 245 aa9.6□□□□□ -0.87
SCN1A-207ENST00000507401 PRPF38BQ5VTL8 546 aaKnown RBP9.6□□□□□ -0.87
SCN1A-207ENST00000507401 GIMAP6Q6P9H5 292 aa9.6□□□□□ -0.87
SCN1A-207ENST00000507401 AMOTL1Q8IY63 956 aa9.6□□□□□ -0.87
SCN1A-207ENST00000507401 CCDC17Q96LX7 622 aa9.6□□□□□ -0.87
SCN1A-207ENST00000507401 STRBPQ96SI9 672 aaKnown RBP9.6□□□□□ -0.87
SCN1A-207ENST00000507401 RBPJLQ9UBG7 517 aa9.6□□□□□ -0.87
SCN1A-207ENST00000507401 GJD2Q9UKL4 321 aa9.6□□□□□ -0.87
SCN1A-207ENST00000507401 ADGRG1Q9Y653 693 aa9.6□□□□□ -0.87
SCN1A-207ENST00000507401 USP17L12C9JPN9 530 aa9.59□□□□□ -0.87
SCN1A-207ENST00000507401 USP17L21D6R901 530 aa9.59□□□□□ -0.87
SCN1A-207ENST00000507401 ERC2O15083 957 aa9.59□□□□□ -0.87
SCN1A-207ENST00000507401 RNF113AO15541 343 aaKnown RBP9.59□□□□□ -0.87
SCN1A-207ENST00000507401 PRKAB2O43741 272 aa9.59□□□□□ -0.87
SCN1A-207ENST00000507401 XRCC5P13010 732 aaKnown RBP9.59□□□□□ -0.87
SCN1A-207ENST00000507401 GUCY1A2P33402 732 aa9.59□□□□□ -0.87
SCN1A-207ENST00000507401 GJA8P48165 433 aa9.59□□□□□ -0.87
SCN1A-207ENST00000507401 HDAC1Q13547 482 aaPredicted RBP9.59□□□□□ -0.87
SCN1A-207ENST00000507401 LBX2Q6XYB7 198 aa9.59□□□□□ -0.87
SCN1A-207ENST00000507401 CATSPERGQ6ZRH7 1159 aa9.59□□□□□ -0.87
SCN1A-207ENST00000507401 TMEM179Q6ZVK1 233 aa9.59□□□□□ -0.87
SCN1A-207ENST00000507401 TICAM2Q86XR7 235 aa9.59□□□□□ -0.87
SCN1A-207ENST00000507401 GCC1Q96CN9 775 aa9.59□□□□□ -0.87
SCN1A-207ENST00000507401 PUS7LQ9H0K6 701 aaKnown RBP9.59□□□□□ -0.87
SCN1A-207ENST00000507401 BIN2Q9UBW5 565 aaPredicted RBP9.59□□□□□ -0.87
SCN1A-207ENST00000507401 RABGAP1Q9Y3P9 1069 aa9.59□□□□□ -0.87
SCN1A-207ENST00000507401 SLC4A4Q9Y6R1 1079 aa9.59□□□□□ -0.87
SCN1A-207ENST00000507401 MYH7P12883 1935 aa9.58□□□□□ -0.88
SCN1A-207ENST00000507401 DOCK3Q8IZD9 2030 aa9.58□□□□□ -0.88
SCN1A-207ENST00000507401 GLRX3O76003 335 aaKnown RBP9.58□□□□□ -0.88
SCN1A-207ENST00000507401 CCL5P13501 91 aa9.58□□□□□ -0.88
SCN1A-207ENST00000507401 GNAT2P19087 354 aa9.58□□□□□ -0.88
SCN1A-207ENST00000507401 MAPK4P31152 587 aa9.58□□□□□ -0.88
SCN1A-207ENST00000507401 SEPT2Q15019 361 aa9.58□□□□□ -0.88
SCN1A-207ENST00000507401 MTFR1Q15390 333 aa9.58□□□□□ -0.88
SCN1A-207ENST00000507401 Q3C1V9 767 aa9.58□□□□□ -0.88
SCN1A-207ENST00000507401 SLFNL1Q499Z3 407 aa9.58□□□□□ -0.88
SCN1A-207ENST00000507401 SBK1Q52WX2 424 aa9.58□□□□□ -0.88
SCN1A-207ENST00000507401 CTR9Q6PD62 1173 aa9.58□□□□□ -0.88
SCN1A-207ENST00000507401 C16orf86Q6ZW13 317 aa9.58□□□□□ -0.88
SCN1A-207ENST00000507401 ACER1Q8TDN7 264 aa9.58□□□□□ -0.88
SCN1A-207ENST00000507401 APPBP2Q92624 585 aa9.58□□□□□ -0.88
SCN1A-207ENST00000507401 FEZ1Q99689 392 aa9.58□□□□□ -0.88
SCN1A-207ENST00000507401 RNF208Q9H0X6 261 aa9.58□□□□□ -0.88
SCN1A-207ENST00000507401 TXNRD2Q9NNW7 524 aa9.58□□□□□ -0.88
SCN1A-207ENST00000507401 HOXC10Q9NYD6 342 aa9.58□□□□□ -0.88
SCN1A-207ENST00000507401 ISY1Q9ULR0 285 aaKnown RBP9.58□□□□□ -0.88
SCN1A-207ENST00000507401 DDX60LQ5H9U9 1706 aaKnown RBP9.58□□□□□ -0.88
SCN1A-207ENST00000507401 NAV1Q8NEY1 1877 aa9.57□□□□□ -0.88
SCN1A-207ENST00000507401 A0A1W2PRG0 241 aa9.57□□□□□ -0.88
SCN1A-207ENST00000507401 PATL2C9JE40 543 aaKnown RBP9.57□□□□□ -0.88
SCN1A-207ENST00000507401 MPHOSPH10O00566 681 aaKnown RBP9.57□□□□□ -0.88
SCN1A-207ENST00000507401 SGPL1O95470 568 aa9.57□□□□□ -0.88
SCN1A-207ENST00000507401 MYCP01106 439 aaPredicted RBP9.57□□□□□ -0.88
SCN1A-207ENST00000507401 CHGBP05060 677 aa9.57□□□□□ -0.88
SCN1A-207ENST00000507401 CYP2D6P10635 497 aa9.57□□□□□ -0.88
SCN1A-207ENST00000507401 VCAM1P19320 739 aa9.57□□□□□ -0.88
SCN1A-207ENST00000507401 CDK8P49336 464 aa9.57□□□□□ -0.88
SCN1A-207ENST00000507401 ERVK-9P63128 1117 aa9.57□□□□□ -0.88
SCN1A-207ENST00000507401 ERVK-24P63145 666 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms