RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 DYDC1Q8WWB3 177 aa12.02□□□□□ -0.49
LIMCH1-205ENST00000503057 BICD1Q96G01 975 aa12.02□□□□□ -0.49
LIMCH1-205ENST00000503057 BRIP1Q9BX63 1249 aa12.02□□□□□ -0.49
LIMCH1-205ENST00000503057 CUEDC2Q9H467 287 aa12.02□□□□□ -0.49
LIMCH1-205ENST00000503057 VPS18Q9P253 973 aa12.02□□□□□ -0.49
LIMCH1-205ENST00000503057 WDHD1O75717 1129 aaPredicted RBP12.02□□□□□ -0.49
LIMCH1-205ENST00000503057 ALDH1B1P30837 517 aa12.02□□□□□ -0.49
LIMCH1-205ENST00000503057 TNNC1P63316 161 aa12.02□□□□□ -0.49
LIMCH1-205ENST00000503057 NUCKS1Q9H1E3 243 aaKnown RBP12.02□□□□□ -0.49
LIMCH1-205ENST00000503057 CETN3O15182 167 aa12.02□□□□□ -0.49
LIMCH1-205ENST00000503057 VAV2P52735 878 aa12.02□□□□□ -0.49
LIMCH1-205ENST00000503057 MCTP2Q6DN12 878 aa12.02□□□□□ -0.49
LIMCH1-205ENST00000503057 GOLPH3LQ9H4A5 285 aa12.02□□□□□ -0.49
LIMCH1-205ENST00000503057 EFCAB8A8MWE9 144 aa12.01□□□□□ -0.49
LIMCH1-205ENST00000503057 SLFN14P0C7P3 912 aa12.01□□□□□ -0.49
LIMCH1-205ENST00000503057 DNM2P50570 870 aa12.01□□□□□ -0.49
LIMCH1-205ENST00000503057 RBM26Q5T8P6 1007 aaKnown RBP12.01□□□□□ -0.49
LIMCH1-205ENST00000503057 PLA2G4DQ86XP0 818 aa12.01□□□□□ -0.49
LIMCH1-205ENST00000503057 SLF1Q9BQI6 1058 aa12.01□□□□□ -0.49
LIMCH1-205ENST00000503057 ZNF335Q9H4Z2 1342 aaPredicted RBP12.01□□□□□ -0.49
LIMCH1-205ENST00000503057 GNA14O95837 355 aa12.01□□□□□ -0.49
LIMCH1-205ENST00000503057 DCAF17Q5H9S7 520 aaPredicted RBP12.01□□□□□ -0.49
LIMCH1-205ENST00000503057 CYB5R4Q7L1T6 521 aa12.01□□□□□ -0.49
LIMCH1-205ENST00000503057 DYMQ7RTS9 669 aa12.01□□□□□ -0.49
LIMCH1-205ENST00000503057 OR8K1Q8NGG5 319 aa12.01□□□□□ -0.49
LIMCH1-205ENST00000503057 CCDC113Q9H0I3 377 aa12.01□□□□□ -0.49
LIMCH1-205ENST00000503057 VEZTQ9HBM0 779 aa12.01□□□□□ -0.49
LIMCH1-205ENST00000503057 FRMD4BQ9Y2L6 1034 aa12.01□□□□□ -0.49
LIMCH1-205ENST00000503057 FER1L4A9Z1Z3 1794 aa12.01□□□□□ -0.49
LIMCH1-205ENST00000503057 SLC9C1Q4G0N8 1177 aa12.01□□□□□ -0.49
LIMCH1-205ENST00000503057 DNAI2Q9GZS0 605 aa12.01□□□□□ -0.49
LIMCH1-205ENST00000503057 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.01□□□□□ -0.49
LIMCH1-205ENST00000503057 SOS2Q07890 1332 aaPredicted RBP12.01□□□□□ -0.49
LIMCH1-205ENST00000503057 RAPGEF1Q13905 1077 aa12.01□□□□□ -0.49
LIMCH1-205ENST00000503057 ASIC2Q16515 512 aa12.01□□□□□ -0.49
LIMCH1-205ENST00000503057 WHAMMP3Q1A5X7 153 aa12.01□□□□□ -0.49
LIMCH1-205ENST00000503057 NBPF11Q86T75 865 aa12.01□□□□□ -0.49
LIMCH1-205ENST00000503057 ENOX1Q8TC92 643 aaKnown RBP12.01□□□□□ -0.49
LIMCH1-205ENST00000503057 CTNNBL1Q8WYA6 563 aaPredicted RBP12.01□□□□□ -0.49
LIMCH1-205ENST00000503057 NOX5Q96PH1 765 aa12.01□□□□□ -0.49
LIMCH1-205ENST00000503057 IL25Q9H293 177 aa12.01□□□□□ -0.49
LIMCH1-205ENST00000503057 ZNF215Q9UL58 517 aaPredicted RBP12.01□□□□□ -0.49
LIMCH1-205ENST00000503057 FMR1NBQ8N0W7 255 aaPredicted RBP12□□□□□ -0.49
LIMCH1-205ENST00000503057 AIFM3Q96NN9 605 aa12□□□□□ -0.49
LIMCH1-205ENST00000503057 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12□□□□□ -0.49
LIMCH1-205ENST00000503057 RFX5P48382 616 aaPredicted RBP12□□□□□ -0.49
LIMCH1-205ENST00000503057 NR5A1Q13285 461 aa12□□□□□ -0.49
LIMCH1-205ENST00000503057 STOX1Q6ZVD7 989 aa12□□□□□ -0.49
LIMCH1-205ENST00000503057 AK8Q96MA6 479 aa12□□□□□ -0.49
LIMCH1-205ENST00000503057 PHLPP2Q6ZVD8 1323 aa12□□□□□ -0.49
LIMCH1-205ENST00000503057 RIMS1Q86UR5 1692 aaKnown RBP12□□□□□ -0.49
LIMCH1-205ENST00000503057 MYL1P05976 194 aa12□□□□□ -0.49
LIMCH1-205ENST00000503057 GTF2IP78347 998 aa12□□□□□ -0.49
LIMCH1-205ENST00000503057 TSC1Q92574 1164 aa12□□□□□ -0.49
LIMCH1-205ENST00000503057 RPGRIP1Q96KN7 1286 aa12□□□□□ -0.49
LIMCH1-205ENST00000503057 USP40Q9NVE5 1235 aa12□□□□□ -0.49
LIMCH1-205ENST00000503057 DNM3Q9UQ16 869 aa12□□□□□ -0.49
LIMCH1-205ENST00000503057 GSTTP1A0A1W2PQM5 241 aa12□□□□□ -0.49
LIMCH1-205ENST00000503057 CAPN2P17655 700 aa12□□□□□ -0.49
LIMCH1-205ENST00000503057 TRMT1LQ7Z2T5 733 aaKnown RBP12□□□□□ -0.49
LIMCH1-205ENST00000503057 VSTM4Q8IW00 320 aa12□□□□□ -0.49
LIMCH1-205ENST00000503057 KCNB2Q92953 911 aa12□□□□□ -0.49
LIMCH1-205ENST00000503057 TEKT1Q969V4 418 aa12□□□□□ -0.49
LIMCH1-205ENST00000503057 MPHOSPH6Q99547 160 aaKnown RBP12□□□□□ -0.49
LIMCH1-205ENST00000503057 LY9Q9HBG7 655 aa12□□□□□ -0.49
LIMCH1-205ENST00000503057 TSKSQ9UJT2 592 aa12□□□□□ -0.49
LIMCH1-205ENST00000503057 TECP42680 631 aa12□□□□□ -0.49
LIMCH1-205ENST00000503057 NCAPH2Q6IBW4 605 aa12□□□□□ -0.49
LIMCH1-205ENST00000503057 hCG_1984214I3L0E3 225 aa11.99□□□□□ -0.49
LIMCH1-205ENST00000503057 LONRF3Q496Y0 759 aa11.99□□□□□ -0.49
LIMCH1-205ENST00000503057 ZNF713Q8N859 430 aaPredicted RBP11.99□□□□□ -0.49
LIMCH1-205ENST00000503057 ZNF579Q8NAF0 562 aaKnown RBP11.99□□□□□ -0.49
LIMCH1-205ENST00000503057 PCDHB6Q9Y5E3 794 aa11.99□□□□□ -0.49
LIMCH1-205ENST00000503057 COPB1P53618 953 aaKnown RBP11.99□□□□□ -0.49
LIMCH1-205ENST00000503057 HERC4Q5GLZ8 1057 aaPredicted RBP11.99□□□□□ -0.49
LIMCH1-205ENST00000503057 RIPOR2Q9Y4F9 1068 aa11.99□□□□□ -0.49
LIMCH1-205ENST00000503057 CPDO75976 1380 aa11.99□□□□□ -0.49
LIMCH1-205ENST00000503057 A0A087WWV3 80 aa11.99□□□□□ -0.49
LIMCH1-205ENST00000503057 MECOMQ03112 1051 aa11.99□□□□□ -0.49
LIMCH1-205ENST00000503057 BRD3Q15059 726 aa11.99□□□□□ -0.49
LIMCH1-205ENST00000503057 ZNF512BQ96KM6 892 aaPredicted RBP11.99□□□□□ -0.49
LIMCH1-205ENST00000503057 DESI2Q9BSY9 194 aa11.99□□□□□ -0.49
LIMCH1-205ENST00000503057 ZNF658Q5TYW1 1059 aaPredicted RBP11.99□□□□□ -0.49
LIMCH1-205ENST00000503057 SUPT20HQ8NEM7 779 aa11.99□□□□□ -0.49
LIMCH1-205ENST00000503057 GOLGA8HP0CJ92 632 aa11.98□□□□□ -0.49
LIMCH1-205ENST00000503057 MAP2K1Q02750 393 aaPredicted RBP11.98□□□□□ -0.49
LIMCH1-205ENST00000503057 BBXQ8WY36 941 aaPredicted RBP11.98□□□□□ -0.49
LIMCH1-205ENST00000503057 DDX12PQ92771 950 aa11.98□□□□□ -0.49
LIMCH1-205ENST00000503057 SH3GLB2Q9NR46 395 aa11.98□□□□□ -0.49
LIMCH1-205ENST00000503057 SPTLC3Q9NUV7 552 aa11.98□□□□□ -0.49
LIMCH1-205ENST00000503057 PDE6BP35913 854 aa11.98□□□□□ -0.49
LIMCH1-205ENST00000503057 TMC4Q7Z404 712 aa11.98□□□□□ -0.49
LIMCH1-205ENST00000503057 COL15A1P39059 1388 aa11.98□□□□□ -0.49
LIMCH1-205ENST00000503057 FRMPD2Q68DX3 1309 aaPredicted RBP11.98□□□□□ -0.49
LIMCH1-205ENST00000503057 ASPRV1Q53RT3 343 aa11.98□□□□□ -0.49
LIMCH1-205ENST00000503057 SGMS1Q86VZ5 419 aa11.98□□□□□ -0.49
LIMCH1-205ENST00000503057 CCDC155Q8N6L0 562 aa11.98□□□□□ -0.49
LIMCH1-205ENST00000503057 ERCC6LQ2NKX8 1250 aa11.98□□□□□ -0.49
LIMCH1-205ENST00000503057 SFMBT2Q5VUG0 894 aa11.98□□□□□ -0.49
LIMCH1-205ENST00000503057 SLFN12Q8IYM2 578 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms