RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 ERO1AQ96HE7 468 aa12.72□□□□□ -0.37
CHMP3-209ENST00000494623 MAD2L2Q9UI95 211 aa12.72□□□□□ -0.37
CHMP3-209ENST00000494623 FAM205AQ6ZU69 1335 aa12.72□□□□□ -0.37
CHMP3-209ENST00000494623 ARHGAP6O43182 974 aa12.72□□□□□ -0.37
CHMP3-209ENST00000494623 LDHCP07864 332 aa12.72□□□□□ -0.37
CHMP3-209ENST00000494623 GOLGA8HP0CJ92 632 aa12.72□□□□□ -0.37
CHMP3-209ENST00000494623 ETF1P62495 437 aaKnown RBP12.72□□□□□ -0.37
CHMP3-209ENST00000494623 CUL4BQ13620 913 aa12.72□□□□□ -0.37
CHMP3-209ENST00000494623 TYW1BQ6NUM6 668 aa12.72□□□□□ -0.37
CHMP3-209ENST00000494623 TC2NQ8N9U0 490 aa12.72□□□□□ -0.37
CHMP3-209ENST00000494623 PCDHA4Q9UN74 947 aa12.72□□□□□ -0.37
CHMP3-209ENST00000494623 SYNRGQ9UMZ2 1314 aa12.71□□□□□ -0.37
CHMP3-209ENST00000494623 ZSCAN12O43309 604 aa12.71□□□□□ -0.37
CHMP3-209ENST00000494623 GRM4Q14833 912 aa12.71□□□□□ -0.37
CHMP3-209ENST00000494623 RRAGBQ5VZM2 374 aa12.71□□□□□ -0.37
CHMP3-209ENST00000494623 HEATR3Q7Z4Q2 680 aa12.71□□□□□ -0.37
CHMP3-209ENST00000494623 CPLX3Q8WVH0 158 aa12.71□□□□□ -0.37
CHMP3-209ENST00000494623 CGNQ9P2M7 1197 aaKnown RBP12.71□□□□□ -0.37
CHMP3-209ENST00000494623 PPP2R2CQ9Y2T4 447 aa12.71□□□□□ -0.37
CHMP3-209ENST00000494623 A0A1B0GTH6 734 aa12.71□□□□□ -0.38
CHMP3-209ENST00000494623 CCDC194A0A1B0GVG4 234 aa12.71□□□□□ -0.38
CHMP3-209ENST00000494623 UFL1O94874 794 aa12.71□□□□□ -0.38
CHMP3-209ENST00000494623 PPP4CP60510 307 aa12.71□□□□□ -0.38
CHMP3-209ENST00000494623 ELF2Q15723 593 aa12.71□□□□□ -0.38
CHMP3-209ENST00000494623 E2F4Q16254 413 aa12.71□□□□□ -0.38
CHMP3-209ENST00000494623 PRR5LQ6MZQ0 368 aa12.71□□□□□ -0.38
CHMP3-209ENST00000494623 TRIM65Q6PJ69 517 aa12.71□□□□□ -0.38
CHMP3-209ENST00000494623 CREBRFQ8IUR6 639 aa12.71□□□□□ -0.38
CHMP3-209ENST00000494623 ANKS1AQ92625 1134 aa12.71□□□□□ -0.38
CHMP3-209ENST00000494623 TMEM47Q9BQJ4 181 aa12.71□□□□□ -0.38
CHMP3-209ENST00000494623 CPVLQ9H3G5 476 aa12.71□□□□□ -0.38
CHMP3-209ENST00000494623 CD209Q9NNX6 404 aa12.71□□□□□ -0.38
CHMP3-209ENST00000494623 CTNND2Q9UQB3 1225 aa12.71□□□□□ -0.38
CHMP3-209ENST00000494623 CYTH3O43739 400 aa12.7□□□□□ -0.38
CHMP3-209ENST00000494623 TUBB4AP04350 444 aa12.7□□□□□ -0.38
CHMP3-209ENST00000494623 BTDP43251 543 aa12.7□□□□□ -0.38
CHMP3-209ENST00000494623 GNAQP50148 359 aa12.7□□□□□ -0.38
CHMP3-209ENST00000494623 SLC35G1Q2M3R5 365 aa12.7□□□□□ -0.38
CHMP3-209ENST00000494623 CT47A1Q5JQC4 288 aaPredicted RBP12.7□□□□□ -0.38
CHMP3-209ENST00000494623 C4orf32Q8N8J7 132 aa12.7□□□□□ -0.38
CHMP3-209ENST00000494623 MTRQ99707 1265 aa12.7□□□□□ -0.38
CHMP3-209ENST00000494623 L2HGDHQ9H9P8 463 aa12.7□□□□□ -0.38
CHMP3-209ENST00000494623 BTAF1O14981 1849 aa12.7□□□□□ -0.38
CHMP3-209ENST00000494623 DLEC1Q9Y238 1755 aa12.7□□□□□ -0.38
CHMP3-209ENST00000494623 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.7□□□□□ -0.38
CHMP3-209ENST00000494623 STX10O60499 249 aa12.7□□□□□ -0.38
CHMP3-209ENST00000494623 WWC2Q6AWC2 1192 aa12.7□□□□□ -0.38
CHMP3-209ENST00000494623 PDXDC2PQ6P474 469 aa12.7□□□□□ -0.38
CHMP3-209ENST00000494623 TOGARAM2Q6ZUX3 1019 aa12.7□□□□□ -0.38
CHMP3-209ENST00000494623 LRRN4CLQ8ND94 238 aa12.7□□□□□ -0.38
CHMP3-209ENST00000494623 PRDM10Q9NQV6 1147 aa12.7□□□□□ -0.38
CHMP3-209ENST00000494623 SH3GLB2Q9NR46 395 aa12.7□□□□□ -0.38
CHMP3-209ENST00000494623 LRRC4BQ9NT99 713 aa12.7□□□□□ -0.38
CHMP3-209ENST00000494623 PCDHA6Q9UN73 950 aa12.7□□□□□ -0.38
CHMP3-209ENST00000494623 PCDHA8Q9Y5H6 950 aa12.7□□□□□ -0.38
CHMP3-209ENST00000494623 CCDC88AQ3V6T2 1871 aa12.69□□□□□ -0.38
CHMP3-209ENST00000494623 RASA1P20936 1047 aa12.69□□□□□ -0.38
CHMP3-209ENST00000494623 KARSQ15046 597 aaKnown RBP12.69□□□□□ -0.38
CHMP3-209ENST00000494623 INF2Q27J81 1249 aa12.69□□□□□ -0.38
CHMP3-209ENST00000494623 CCDC178Q5BJE1 867 aa12.69□□□□□ -0.38
CHMP3-209ENST00000494623 RASGRP2Q7LDG7 609 aa12.69□□□□□ -0.38
CHMP3-209ENST00000494623 APTXQ7Z2E3 356 aaKnown RBP12.69□□□□□ -0.38
CHMP3-209ENST00000494623 RTFDC1Q9BY42 306 aaPredicted RBP12.69□□□□□ -0.38
CHMP3-209ENST00000494623 MAPK8IP1Q9UQF2 711 aa12.69□□□□□ -0.38
CHMP3-209ENST00000494623 AKR1B15C9JRZ8 316 aaPredicted RBP12.69□□□□□ -0.38
CHMP3-209ENST00000494623 GTPBP6O43824 516 aaPredicted RBP12.69□□□□□ -0.38
CHMP3-209ENST00000494623 URI1O94763 535 aaPredicted RBP12.69□□□□□ -0.38
CHMP3-209ENST00000494623 RBL2Q08999 1139 aa12.69□□□□□ -0.38
CHMP3-209ENST00000494623 FILIP1LQ4L180 1135 aa12.69□□□□□ -0.38
CHMP3-209ENST00000494623 CCDC93Q567U6 631 aa12.69□□□□□ -0.38
CHMP3-209ENST00000494623 DTHD1Q6ZMT9 781 aa12.69□□□□□ -0.38
CHMP3-209ENST00000494623 PPFIBP1Q86W92 1011 aa12.69□□□□□ -0.38
CHMP3-209ENST00000494623 FCHSD1Q86WN1 690 aa12.69□□□□□ -0.38
CHMP3-209ENST00000494623 TEX11Q8IYF3 940 aa12.69□□□□□ -0.38
CHMP3-209ENST00000494623 IGSF22Q8N9C0 903 aa12.69□□□□□ -0.38
CHMP3-209ENST00000494623 RASSF8Q8NHQ8 419 aa12.69□□□□□ -0.38
CHMP3-209ENST00000494623 PLIN2Q99541 437 aa12.69□□□□□ -0.38
CHMP3-209ENST00000494623 VAT1LQ9HCJ6 419 aa12.69□□□□□ -0.38
CHMP3-209ENST00000494623 TCP11L1Q9NUJ3 509 aa12.69□□□□□ -0.38
CHMP3-209ENST00000494623 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.69□□□□□ -0.38
CHMP3-209ENST00000494623 COL24A1Q17RW2 1714 aa12.69□□□□□ -0.38
CHMP3-209ENST00000494623 PP2D1A8MPX8 630 aa12.68□□□□□ -0.38
CHMP3-209ENST00000494623 LONP1P36776 959 aaKnown RBP12.68□□□□□ -0.38
CHMP3-209ENST00000494623 TXLNAP40222 546 aa12.68□□□□□ -0.38
CHMP3-209ENST00000494623 STAT6P42226 847 aa12.68□□□□□ -0.38
CHMP3-209ENST00000494623 CDK8P49336 464 aa12.68□□□□□ -0.38
CHMP3-209ENST00000494623 ERCC6LQ2NKX8 1250 aa12.68□□□□□ -0.38
CHMP3-209ENST00000494623 CDKAL1Q5VV42 579 aa12.68□□□□□ -0.38
CHMP3-209ENST00000494623 ARL6IP4Q66PJ3 421 aaKnown RBP12.68□□□□□ -0.38
CHMP3-209ENST00000494623 EYA3Q99504 573 aa12.68□□□□□ -0.38
CHMP3-209ENST00000494623 DESI2Q9BSY9 194 aa12.68□□□□□ -0.38
CHMP3-209ENST00000494623 TMEM60Q9H2L4 133 aa12.68□□□□□ -0.38
CHMP3-209ENST00000494623 GGA1Q9UJY5 639 aa12.68□□□□□ -0.38
CHMP3-209ENST00000494623 TNRC6CQ9HCJ0 1690 aaKnown RBP12.68□□□□□ -0.38
CHMP3-209ENST00000494623 KIAA1551Q9HCM1 1747 aa12.68□□□□□ -0.38
CHMP3-209ENST00000494623 KLRF2D3W0D1 207 aa12.68□□□□□ -0.38
CHMP3-209ENST00000494623 CCT6AP40227 531 aaKnown RBP12.68□□□□□ -0.38
CHMP3-209ENST00000494623 MTF1Q14872 753 aa12.68□□□□□ -0.38
CHMP3-209ENST00000494623 KMT5BQ4FZB7 885 aa12.68□□□□□ -0.38
CHMP3-209ENST00000494623 PYM1Q9BRP8 204 aaKnown RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms