RNA–Protein interactions for RNA: ENST00000493949.1

PDLIM1-205, Transcript of PDZ and LIM domain 1, humanhuman

TSL 3

Gene PDLIM1, Length 795 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-205ENST00000493949 LRFN3Q9BTN0 628 aa12.44□□□□□ -0.42
PDLIM1-205ENST00000493949 BICC1Q9H694 974 aaKnown RBP12.44□□□□□ -0.42
PDLIM1-205ENST00000493949 PRDM5Q9NQX1 630 aaPredicted RBP12.44□□□□□ -0.42
PDLIM1-205ENST00000493949 RBPJLQ9UBG7 517 aa12.44□□□□□ -0.42
PDLIM1-205ENST00000493949 USP25Q9UHP3 1055 aa12.44□□□□□ -0.42
PDLIM1-205ENST00000493949 R3HCC1Q9Y3T6 440 aaKnown RBP12.44□□□□□ -0.42
PDLIM1-205ENST00000493949 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.44□□□□□ -0.42
PDLIM1-205ENST00000493949 GAKO14976 1311 aa12.43□□□□□ -0.42
PDLIM1-205ENST00000493949 CCDC171Q6TFL3 1326 aa12.43□□□□□ -0.42
PDLIM1-205ENST00000493949 SYCE3A1L190 88 aa12.43□□□□□ -0.42
PDLIM1-205ENST00000493949 IGHA2P01877 340 aa12.43□□□□□ -0.42
PDLIM1-205ENST00000493949 LDHBP07195 334 aaKnown RBP12.43□□□□□ -0.42
PDLIM1-205ENST00000493949 IFIT1P09914 478 aaKnown RBP12.43□□□□□ -0.42
PDLIM1-205ENST00000493949 UBE2HP62256 183 aa12.43□□□□□ -0.42
PDLIM1-205ENST00000493949 ERVK-9P63128 1117 aa12.43□□□□□ -0.42
PDLIM1-205ENST00000493949 ERVK-24P63145 666 aa12.43□□□□□ -0.42
PDLIM1-205ENST00000493949 IRX3P78415 501 aaPredicted RBP12.43□□□□□ -0.42
PDLIM1-205ENST00000493949 MAP2K5Q13163 448 aa12.43□□□□□ -0.42
PDLIM1-205ENST00000493949 MFSD14CQ5VZR4 134 aa12.43□□□□□ -0.42
PDLIM1-205ENST00000493949 SH3RF1Q7Z6J0 888 aa12.43□□□□□ -0.42
PDLIM1-205ENST00000493949 PLEKHH3Q7Z736 793 aa12.43□□□□□ -0.42
PDLIM1-205ENST00000493949 ZSCAN29Q8IWY8 852 aaPredicted RBP12.43□□□□□ -0.42
PDLIM1-205ENST00000493949 ZGPATQ8N5A5 531 aaKnown RBP12.43□□□□□ -0.42
PDLIM1-205ENST00000493949 PORCNQ9H237 461 aa12.43□□□□□ -0.42
PDLIM1-205ENST00000493949 DDX4Q9NQI0 724 aaKnown RBP12.43□□□□□ -0.42
PDLIM1-205ENST00000493949 SPTLC3Q9NUV7 552 aa12.43□□□□□ -0.42
PDLIM1-205ENST00000493949 SMCHD1A6NHR9 2005 aa12.42□□□□□ -0.42
PDLIM1-205ENST00000493949 USP17L5A8MUK1 530 aa12.42□□□□□ -0.42
PDLIM1-205ENST00000493949 GOLGA6L6A8MZA4 724 aa12.42□□□□□ -0.42
PDLIM1-205ENST00000493949 PEX10O60683 326 aa12.42□□□□□ -0.42
PDLIM1-205ENST00000493949 PTMAP06454 111 aaKnown RBP12.42□□□□□ -0.42
PDLIM1-205ENST00000493949 HOXC6P09630 235 aa12.42□□□□□ -0.42
PDLIM1-205ENST00000493949 BMP1P13497 986 aa12.42□□□□□ -0.42
PDLIM1-205ENST00000493949 CHMLP26374 656 aa12.42□□□□□ -0.42
PDLIM1-205ENST00000493949 EPHB4P54760 987 aa12.42□□□□□ -0.42
PDLIM1-205ENST00000493949 ATP8B2P98198 1209 aa12.42□□□□□ -0.42
PDLIM1-205ENST00000493949 PUM3Q15397 648 aaKnown RBP12.42□□□□□ -0.42
PDLIM1-205ENST00000493949 Q3C1V9 767 aa12.42□□□□□ -0.42
PDLIM1-205ENST00000493949 RABL6Q3YEC7 729 aaPredicted RBP12.42□□□□□ -0.42
PDLIM1-205ENST00000493949 TRIM60Q495X7 471 aa12.42□□□□□ -0.42
PDLIM1-205ENST00000493949 HSP90AB4PQ58FF6 505 aa12.42□□□□□ -0.42
PDLIM1-205ENST00000493949 UTP14CQ5TAP6 766 aaKnown RBP12.42□□□□□ -0.42
PDLIM1-205ENST00000493949 ARRDC4Q8NCT1 418 aa12.42□□□□□ -0.42
PDLIM1-205ENST00000493949 GTF3C2Q8WUA4 911 aaPredicted RBP12.42□□□□□ -0.42
PDLIM1-205ENST00000493949 TIFAQ96CG3 184 aa12.42□□□□□ -0.42
PDLIM1-205ENST00000493949 EDC3Q96F86 508 aaKnown RBP12.42□□□□□ -0.42
PDLIM1-205ENST00000493949 MEIS3Q99687 375 aa12.42□□□□□ -0.42
PDLIM1-205ENST00000493949 WDR18Q9BV38 432 aa12.42□□□□□ -0.42
PDLIM1-205ENST00000493949 FLRT1Q9NZU1 646 aa12.42□□□□□ -0.42
PDLIM1-205ENST00000493949 HDAC5Q9UQL6 1122 aa12.42□□□□□ -0.42
PDLIM1-205ENST00000493949 TRPC6Q9Y210 931 aa12.42□□□□□ -0.42
PDLIM1-205ENST00000493949 GBF1Q92538 1859 aa12.42□□□□□ -0.42
PDLIM1-205ENST00000493949 ZNF236Q9UL36 1845 aa12.41□□□□□ -0.42
PDLIM1-205ENST00000493949 RAD50Q92878 1312 aa12.41□□□□□ -0.42
PDLIM1-205ENST00000493949 MAP3K13O43283 966 aa12.41□□□□□ -0.42
PDLIM1-205ENST00000493949 ALDH1L1O75891 902 aa12.41□□□□□ -0.42
PDLIM1-205ENST00000493949 ITGB8P26012 769 aa12.41□□□□□ -0.42
PDLIM1-205ENST00000493949 HSPA4P34932 840 aa12.41□□□□□ -0.42
PDLIM1-205ENST00000493949 TIE1P35590 1138 aa12.41□□□□□ -0.42
PDLIM1-205ENST00000493949 CAP2P40123 477 aa12.41□□□□□ -0.42
PDLIM1-205ENST00000493949 ZSCAN31Q96LW9 406 aaPredicted RBP12.41□□□□□ -0.42
PDLIM1-205ENST00000493949 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.41□□□□□ -0.42
PDLIM1-205ENST00000493949 AS3MTQ9HBK9 375 aa12.41□□□□□ -0.42
PDLIM1-205ENST00000493949 DIAPH3Q9NSV4 1193 aa12.41□□□□□ -0.42
PDLIM1-205ENST00000493949 SIPA1L1O43166 1804 aa12.41□□□□□ -0.42
PDLIM1-205ENST00000493949 FAM196BA6NMK8 535 aa12.4□□□□□ -0.42
PDLIM1-205ENST00000493949 KIAA0355O15063 1070 aa12.4□□□□□ -0.42
PDLIM1-205ENST00000493949 CYBAP13498 195 aa12.4□□□□□ -0.42
PDLIM1-205ENST00000493949 BACE1P56817 501 aa12.4□□□□□ -0.42
PDLIM1-205ENST00000493949 PKP1Q13835 747 aa12.4□□□□□ -0.42
PDLIM1-205ENST00000493949 GJC2Q5T442 439 aaPredicted RBP12.4□□□□□ -0.42
PDLIM1-205ENST00000493949 TRPV1Q8NER1 839 aa12.4□□□□□ -0.42
PDLIM1-205ENST00000493949 PPM1EQ8WY54 764 aa12.4□□□□□ -0.42
PDLIM1-205ENST00000493949 CCDC94Q9BW85 323 aaPredicted RBP12.4□□□□□ -0.42
PDLIM1-205ENST00000493949 TM6SF1Q9BZW5 370 aa12.4□□□□□ -0.42
PDLIM1-205ENST00000493949 SH2B1Q9NRF2 756 aaPredicted RBP12.4□□□□□ -0.42
PDLIM1-205ENST00000493949 CXXC1Q9P0U4 656 aaPredicted RBP12.4□□□□□ -0.42
PDLIM1-205ENST00000493949 TACC3Q9Y6A5 838 aa12.4□□□□□ -0.42
PDLIM1-205ENST00000493949 KBTBD13C9JR72 458 aa12.39□□□□□ -0.43
PDLIM1-205ENST00000493949 CAVIN2O95810 425 aa12.39□□□□□ -0.43
PDLIM1-205ENST00000493949 ADGRE1Q14246 886 aa12.39□□□□□ -0.43
PDLIM1-205ENST00000493949 RRP1BQ14684 758 aaKnown RBP12.39□□□□□ -0.43
PDLIM1-205ENST00000493949 SYCP1Q15431 976 aa12.39□□□□□ -0.43
PDLIM1-205ENST00000493949 CCAR1Q8IX12 1150 aaKnown RBP12.39□□□□□ -0.43
PDLIM1-205ENST00000493949 LPIN2Q92539 896 aa12.39□□□□□ -0.43
PDLIM1-205ENST00000493949 NECAB3Q96P71 396 aaPredicted RBP12.39□□□□□ -0.43
PDLIM1-205ENST00000493949 TTC41PQ6P2S7 1318 aa12.38□□□□□ -0.43
PDLIM1-205ENST00000493949 SLC15A5A6NIM6 579 aa12.38□□□□□ -0.43
PDLIM1-205ENST00000493949 C19orf81C9J6K1 198 aa12.38□□□□□ -0.43
PDLIM1-205ENST00000493949 SEMA3EO15041 775 aa12.38□□□□□ -0.43
PDLIM1-205ENST00000493949 GPR37L1O60883 481 aa12.38□□□□□ -0.43
PDLIM1-205ENST00000493949 GLRX3O76003 335 aaKnown RBP12.38□□□□□ -0.43
PDLIM1-205ENST00000493949 ZSCAN22P10073 491 aaPredicted RBP12.38□□□□□ -0.43
PDLIM1-205ENST00000493949 SLC5A1P13866 664 aa12.38□□□□□ -0.43
PDLIM1-205ENST00000493949 CNGA1P29973 690 aa12.38□□□□□ -0.43
PDLIM1-205ENST00000493949 TLE2Q04725 743 aa12.38□□□□□ -0.43
PDLIM1-205ENST00000493949 FPGSQ05932 587 aa12.38□□□□□ -0.43
PDLIM1-205ENST00000493949 MTMR2Q13614 643 aa12.38□□□□□ -0.43
PDLIM1-205ENST00000493949 TMEM31Q5JXX7 168 aa12.38□□□□□ -0.43
PDLIM1-205ENST00000493949 ALYREFQ86V81 257 aaKnown RBP12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms