RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 FBXO18Q8NFZ0 1043 aa14.68□□□□□ -0.06
VPS52-220ENST00000493674 ACER1Q8TDN7 264 aa14.68□□□□□ -0.06
VPS52-220ENST00000493674 WASF1Q92558 559 aa14.68□□□□□ -0.06
VPS52-220ENST00000493674 SHISA4Q96DD7 197 aa14.68□□□□□ -0.06
VPS52-220ENST00000493674 CDCA5Q96FF9 252 aa14.68□□□□□ -0.06
VPS52-220ENST00000493674 RIOX1Q9H6W3 641 aa14.68□□□□□ -0.06
VPS52-220ENST00000493674 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.68□□□□□ -0.06
VPS52-220ENST00000493674 CEP350Q5VT06 3117 aa14.67□□□□□ -0.06
VPS52-220ENST00000493674 KLRF2D3W0D1 207 aa14.67□□□□□ -0.06
VPS52-220ENST00000493674 F5H6K3 240 aa14.67□□□□□ -0.06
VPS52-220ENST00000493674 NDUFB10O96000 172 aa14.67□□□□□ -0.06
VPS52-220ENST00000493674 ECE1P42892 770 aa14.67□□□□□ -0.06
VPS52-220ENST00000493674 KLRC3Q07444 240 aa14.67□□□□□ -0.06
VPS52-220ENST00000493674 MAP3K11Q16584 847 aa14.67□□□□□ -0.06
VPS52-220ENST00000493674 SLFN13Q68D06 897 aa14.67□□□□□ -0.06
VPS52-220ENST00000493674 DLK2Q6UY11 383 aa14.67□□□□□ -0.06
VPS52-220ENST00000493674 USP48Q86UV5 1035 aa14.67□□□□□ -0.06
VPS52-220ENST00000493674 MTMR8Q96EF0 704 aa14.67□□□□□ -0.06
VPS52-220ENST00000493674 AIFM3Q96NN9 605 aa14.67□□□□□ -0.06
VPS52-220ENST00000493674 WRNIP1Q96S55 665 aa14.67□□□□□ -0.06
VPS52-220ENST00000493674 ALG1Q9BT22 464 aa14.67□□□□□ -0.06
VPS52-220ENST00000493674 WDR18Q9BV38 432 aa14.67□□□□□ -0.06
VPS52-220ENST00000493674 SH2D4AQ9H788 454 aa14.67□□□□□ -0.06
VPS52-220ENST00000493674 VPS37CA5D8V6 355 aaPredicted RBP14.66□□□□□ -0.06
VPS52-220ENST00000493674 POTEIP0CG38 1075 aa14.66□□□□□ -0.06
VPS52-220ENST00000493674 POTEJP0CG39 1038 aa14.66□□□□□ -0.06
VPS52-220ENST00000493674 GOLGA8HP0CJ92 632 aa14.66□□□□□ -0.06
VPS52-220ENST00000493674 ATP2B2Q01814 1243 aa14.66□□□□□ -0.06
VPS52-220ENST00000493674 RESTQ13127 1097 aa14.66□□□□□ -0.06
VPS52-220ENST00000493674 PFKFB3Q16875 520 aaPredicted RBP14.66□□□□□ -0.06
VPS52-220ENST00000493674 KIAA1755Q5JYT7 1200 aa14.66□□□□□ -0.06
VPS52-220ENST00000493674 BTNL9Q6UXG8 535 aa14.66□□□□□ -0.06
VPS52-220ENST00000493674 FAM177A1Q8N128 213 aaPredicted RBP14.66□□□□□ -0.06
VPS52-220ENST00000493674 C8orf76Q96K31 380 aa14.66□□□□□ -0.06
VPS52-220ENST00000493674 GLIS2Q9BZE0 524 aaPredicted RBP14.66□□□□□ -0.06
VPS52-220ENST00000493674 KIAA1683Q9H0B3 1180 aa14.66□□□□□ -0.06
VPS52-220ENST00000493674 VCPKMTQ9H867 229 aa14.66□□□□□ -0.06
VPS52-220ENST00000493674 SCG2P13521 617 aa14.65□□□□□ -0.06
VPS52-220ENST00000493674 APLP1P51693 650 aa14.65□□□□□ -0.06
VPS52-220ENST00000493674 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.65□□□□□ -0.06
VPS52-220ENST00000493674 CCDC82Q8N4S0 544 aa14.65□□□□□ -0.06
VPS52-220ENST00000493674 ZKSCAN4Q969J2 545 aaPredicted RBP14.65□□□□□ -0.06
VPS52-220ENST00000493674 GOPCQ9HD26 462 aa14.65□□□□□ -0.06
VPS52-220ENST00000493674 GJB4Q9NTQ9 266 aa14.65□□□□□ -0.06
VPS52-220ENST00000493674 FZD1Q9UP38 647 aa14.65□□□□□ -0.06
VPS52-220ENST00000493674 CLEC11AQ9Y240 323 aa14.65□□□□□ -0.06
VPS52-220ENST00000493674 SNCAIPQ9Y6H5 919 aa14.65□□□□□ -0.06
VPS52-220ENST00000493674 V9GY48 417 aaPredicted RBP14.65□□□□□ -0.06
VPS52-220ENST00000493674 FRMPD2Q68DX3 1309 aaPredicted RBP14.65□□□□□ -0.06
VPS52-220ENST00000493674 PASKQ96RG2 1323 aa14.65□□□□□ -0.06
VPS52-220ENST00000493674 H3BQV1 296 aa14.64□□□□□ -0.07
VPS52-220ENST00000493674 PLA2G6O60733 806 aa14.64□□□□□ -0.07
VPS52-220ENST00000493674 BAG4O95429 457 aaKnown RBP14.64□□□□□ -0.07
VPS52-220ENST00000493674 PTPRAP18433 802 aa14.64□□□□□ -0.07
VPS52-220ENST00000493674 IFFO2Q5TF58 517 aa14.64□□□□□ -0.07
VPS52-220ENST00000493674 KRT40Q6A162 431 aa14.64□□□□□ -0.07
VPS52-220ENST00000493674 CCDC84Q86UT8 332 aaPredicted RBP14.64□□□□□ -0.07
VPS52-220ENST00000493674 CPVLQ9H3G5 476 aa14.64□□□□□ -0.07
VPS52-220ENST00000493674 SH3GLB2Q9NR46 395 aa14.64□□□□□ -0.07
VPS52-220ENST00000493674 MTMR7Q9Y216 660 aa14.64□□□□□ -0.07
VPS52-220ENST00000493674 LCTP09848 1927 aa14.63□□□□□ -0.07
VPS52-220ENST00000493674 PPP1R12BO60237 982 aaPredicted RBP14.63□□□□□ -0.07
VPS52-220ENST00000493674 MMP1P03956 469 aa14.63□□□□□ -0.07
VPS52-220ENST00000493674 BMP3P12645 472 aa14.63□□□□□ -0.07
VPS52-220ENST00000493674 SLC1A4P43007 532 aa14.63□□□□□ -0.07
VPS52-220ENST00000493674 MAP3K9P80192 1104 aa14.63□□□□□ -0.07
VPS52-220ENST00000493674 AKAP17AQ02040 695 aaKnown RBP14.63□□□□□ -0.07
VPS52-220ENST00000493674 KIF23Q02241 960 aaPredicted RBP14.63□□□□□ -0.07
VPS52-220ENST00000493674 NPY5RQ15761 445 aa14.63□□□□□ -0.07
VPS52-220ENST00000493674 CCDC96Q2M329 555 aa14.63□□□□□ -0.07
VPS52-220ENST00000493674 OTUD7BQ6GQQ9 843 aa14.63□□□□□ -0.07
VPS52-220ENST00000493674 TTBK2Q6IQ55 1244 aa14.63□□□□□ -0.07
VPS52-220ENST00000493674 KCTD1Q719H9 257 aa14.63□□□□□ -0.07
VPS52-220ENST00000493674 LPAR1Q92633 364 aa14.63□□□□□ -0.07
VPS52-220ENST00000493674 C12orf42Q96LP6 360 aa14.63□□□□□ -0.07
VPS52-220ENST00000493674 PHF20Q9BVI0 1012 aa14.63□□□□□ -0.07
VPS52-220ENST00000493674 ZSCAN16Q9H4T2 348 aaPredicted RBP14.63□□□□□ -0.07
VPS52-220ENST00000493674 JMJD4Q9H9V9 463 aa14.63□□□□□ -0.07
VPS52-220ENST00000493674 GPCPD1Q9NPB8 672 aa14.63□□□□□ -0.07
VPS52-220ENST00000493674 hCG_1642624A0A1W2PR95 340 aa14.62□□□□□ -0.07
VPS52-220ENST00000493674 hCG_1984214I3L0E3 225 aa14.62□□□□□ -0.07
VPS52-220ENST00000493674 ITGBL1O95965 494 aaPredicted RBP14.62□□□□□ -0.07
VPS52-220ENST00000493674 U2AF2P26368 475 aaKnown RBP eCLIP14.62□□□□□ -0.072e-14■■□□□ 11.8
VPS52-220ENST00000493674 NF2P35240 595 aa14.62□□□□□ -0.07
VPS52-220ENST00000493674 IREB2P48200 963 aaKnown RBP14.62□□□□□ -0.07
VPS52-220ENST00000493674 FOSBP53539 338 aa14.62□□□□□ -0.07
VPS52-220ENST00000493674 GUCY1B3Q02153 619 aa14.62□□□□□ -0.07
VPS52-220ENST00000493674 VGLL4Q14135 290 aa14.62□□□□□ -0.07
VPS52-220ENST00000493674 FOXD4L5Q5VV16 416 aaPredicted RBP14.62□□□□□ -0.07
VPS52-220ENST00000493674 FERMT3Q86UX7 667 aa14.62□□□□□ -0.07
VPS52-220ENST00000493674 ADGRF4Q8IZF3 695 aa14.62□□□□□ -0.07
VPS52-220ENST00000493674 ZNF713Q8N859 430 aaPredicted RBP14.62□□□□□ -0.07
VPS52-220ENST00000493674 FOXD4L4Q8WXT5 416 aaPredicted RBP14.62□□□□□ -0.07
VPS52-220ENST00000493674 NUP88Q99567 741 aaPredicted RBP14.62□□□□□ -0.07
VPS52-220ENST00000493674 UBA5Q9GZZ9 404 aa14.62□□□□□ -0.07
VPS52-220ENST00000493674 AS3MTQ9HBK9 375 aa14.62□□□□□ -0.07
VPS52-220ENST00000493674 PICK1Q9NRD5 415 aa14.62□□□□□ -0.07
VPS52-220ENST00000493674 UNCXA6NJT0 531 aa14.61□□□□□ -0.07
VPS52-220ENST00000493674 KIF28PB7ZC32 967 aa14.61□□□□□ -0.07
VPS52-220ENST00000493674 STXBP3O00186 592 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms