RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 EPN3Q9H201 632 aa13.1□□□□□ -0.31
HDAC4-210ENST00000493582 EHD2Q9NZN4 543 aa13.1□□□□□ -0.31
HDAC4-210ENST00000493582 VPS54Q9P1Q0 977 aa13.1□□□□□ -0.31
HDAC4-210ENST00000493582 DDX20Q9UHI6 824 aaKnown RBP13.1□□□□□ -0.31
HDAC4-210ENST00000493582 NWD2Q9ULI1 1742 aa13.1□□□□□ -0.31
HDAC4-210ENST00000493582 FAM205CA6NFA0 338 aa13.1□□□□□ -0.31
HDAC4-210ENST00000493582 CXCR5P32302 372 aa13.1□□□□□ -0.31
HDAC4-210ENST00000493582 CCT8L2Q96SF2 557 aa13.1□□□□□ -0.31
HDAC4-210ENST00000493582 PUS3Q9BZE2 481 aaKnown RBP13.1□□□□□ -0.31
HDAC4-210ENST00000493582 ATXN2Q99700 1313 aaKnown RBP13.1□□□□□ -0.31
HDAC4-210ENST00000493582 EPB41P11171 864 aaKnown RBP13.1□□□□□ -0.31
HDAC4-210ENST00000493582 GCFC2P16383 781 aaKnown RBP13.1□□□□□ -0.31
HDAC4-210ENST00000493582 CDR1P51861 262 aa13.1□□□□□ -0.31
HDAC4-210ENST00000493582 E2F5Q15329 346 aa13.1□□□□□ -0.31
HDAC4-210ENST00000493582 WLSQ5T9L3 541 aa13.1□□□□□ -0.31
HDAC4-210ENST00000493582 MICALCLQ6ZW33 695 aa13.1□□□□□ -0.31
HDAC4-210ENST00000493582 MST1RQ04912 1400 aa13.09□□□□□ -0.31
HDAC4-210ENST00000493582 RGPD8O14715 1765 aaPredicted RBP13.09□□□□□ -0.31
HDAC4-210ENST00000493582 PPP1R12AO14974 1030 aaPredicted RBP13.09□□□□□ -0.31
HDAC4-210ENST00000493582 ADORA1P30542 326 aa13.09□□□□□ -0.31
HDAC4-210ENST00000493582 NAIF1Q69YI7 327 aaPredicted RBP13.09□□□□□ -0.31
HDAC4-210ENST00000493582 SYMPKQ92797 1274 aaKnown RBP13.09□□□□□ -0.31
HDAC4-210ENST00000493582 SCLT1Q96NL6 688 aa13.09□□□□□ -0.31
HDAC4-210ENST00000493582 GSDMAQ96QA5 445 aa13.09□□□□□ -0.31
HDAC4-210ENST00000493582 TSR1Q2NL82 804 aaKnown RBP13.09□□□□□ -0.31
HDAC4-210ENST00000493582 YTHDF3Q7Z739 585 aaKnown RBP13.09□□□□□ -0.31
HDAC4-210ENST00000493582 FAM228AQ86W67 206 aa13.09□□□□□ -0.31
HDAC4-210ENST00000493582 SPATS2Q86XZ4 545 aaKnown RBP13.09□□□□□ -0.31
HDAC4-210ENST00000493582 SPATA4Q8NEY3 305 aa13.09□□□□□ -0.31
HDAC4-210ENST00000493582 IGDCC4Q8TDY8 1250 aa13.09□□□□□ -0.31
HDAC4-210ENST00000493582 C4AP0C0L4 1744 aa13.08□□□□□ -0.31
HDAC4-210ENST00000493582 C4BP0C0L5 1744 aa13.08□□□□□ -0.31
HDAC4-210ENST00000493582 KRT83P78385 493 aa13.08□□□□□ -0.32
HDAC4-210ENST00000493582 FOXO4P98177 505 aa13.08□□□□□ -0.32
HDAC4-210ENST00000493582 TRIM14Q14142 442 aa13.08□□□□□ -0.32
HDAC4-210ENST00000493582 TMEM67Q5HYA8 995 aa13.08□□□□□ -0.32
HDAC4-210ENST00000493582 ALS2CLQ60I27 953 aa13.08□□□□□ -0.32
HDAC4-210ENST00000493582 SH3RF1Q7Z6J0 888 aa13.08□□□□□ -0.32
HDAC4-210ENST00000493582 MMGT1Q8N4V1 131 aa13.08□□□□□ -0.32
HDAC4-210ENST00000493582 MYCBPAPQ8TBZ2 947 aa13.08□□□□□ -0.32
HDAC4-210ENST00000493582 CCDC114Q96M63 670 aa13.08□□□□□ -0.32
HDAC4-210ENST00000493582 PXDNQ92626 1479 aa13.08□□□□□ -0.32
HDAC4-210ENST00000493582 PPP1R37O75864 691 aa13.08□□□□□ -0.32
HDAC4-210ENST00000493582 RPSAP08865 295 aaKnown RBP13.08□□□□□ -0.32
HDAC4-210ENST00000493582 ZAP70P43403 619 aa13.08□□□□□ -0.32
HDAC4-210ENST00000493582 EPHB4P54760 987 aa13.08□□□□□ -0.32
HDAC4-210ENST00000493582 SPRED3Q2MJR0 410 aa13.08□□□□□ -0.32
HDAC4-210ENST00000493582 IQCEQ6IPM2 695 aa13.08□□□□□ -0.32
HDAC4-210ENST00000493582 NLRP14Q86W24 1093 aa13.08□□□□□ -0.32
HDAC4-210ENST00000493582 APPBP2Q92624 585 aa13.08□□□□□ -0.32
HDAC4-210ENST00000493582 AGPAT5Q9NUQ2 364 aa13.08□□□□□ -0.32
HDAC4-210ENST00000493582 AMOTL2Q9Y2J4 779 aa13.08□□□□□ -0.32
HDAC4-210ENST00000493582 MARF1Q9Y4F3 1742 aaKnown RBP13.08□□□□□ -0.32
HDAC4-210ENST00000493582 ZNF233A6NK53 670 aa13.08□□□□□ -0.32
HDAC4-210ENST00000493582 A6NNZ2 444 aa13.08□□□□□ -0.32
HDAC4-210ENST00000493582 E7EVH7 732 aa13.08□□□□□ -0.32
HDAC4-210ENST00000493582 SKAP2O75563 359 aaPredicted RBP13.08□□□□□ -0.32
HDAC4-210ENST00000493582 IL15P40933 162 aaPredicted RBP13.08□□□□□ -0.32
HDAC4-210ENST00000493582 PTGISQ16647 500 aa13.08□□□□□ -0.32
HDAC4-210ENST00000493582 TUBB8Q3ZCM7 444 aa13.08□□□□□ -0.32
HDAC4-210ENST00000493582 ZNF790Q6PG37 636 aa13.08□□□□□ -0.32
HDAC4-210ENST00000493582 TEX11Q8IYF3 940 aa13.08□□□□□ -0.32
HDAC4-210ENST00000493582 EHBP1Q8NDI1 1231 aa13.08□□□□□ -0.32
HDAC4-210ENST00000493582 EEF2KMTQ96G04 330 aa13.08□□□□□ -0.32
HDAC4-210ENST00000493582 CCDC43Q96MW1 224 aaKnown RBP13.08□□□□□ -0.32
HDAC4-210ENST00000493582 LY9Q9HBG7 655 aa13.08□□□□□ -0.32
HDAC4-210ENST00000493582 PPANQ9NQ55 473 aaKnown RBP13.08□□□□□ -0.32
HDAC4-210ENST00000493582 SLC12A7Q9Y666 1083 aa13.08□□□□□ -0.32
HDAC4-210ENST00000493582 WDR17Q8IZU2 1322 aa13.07□□□□□ -0.32
HDAC4-210ENST00000493582 WDR19Q8NEZ3 1342 aa13.07□□□□□ -0.32
HDAC4-210ENST00000493582 FMNL1O95466 1100 aaPredicted RBP13.07□□□□□ -0.32
HDAC4-210ENST00000493582 FAM153BP0C7A2 387 aa13.07□□□□□ -0.32
HDAC4-210ENST00000493582 CASP7P55210 303 aa13.07□□□□□ -0.32
HDAC4-210ENST00000493582 FAM153CQ494X1 144 aa13.07□□□□□ -0.32
HDAC4-210ENST00000493582 PARP9Q8IXQ6 854 aa13.07□□□□□ -0.32
HDAC4-210ENST00000493582 NELFBQ8WX92 580 aa13.07□□□□□ -0.32
HDAC4-210ENST00000493582 DNAJC7Q99615 494 aa13.07□□□□□ -0.32
HDAC4-210ENST00000493582 FAM153AQ9UHL3 310 aa13.07□□□□□ -0.32
HDAC4-210ENST00000493582 TRHP20396 242 aaPredicted RBP13.07□□□□□ -0.32
HDAC4-210ENST00000493582 LTKP29376 864 aa13.07□□□□□ -0.32
HDAC4-210ENST00000493582 CLNS1AP54105 237 aaKnown RBP13.07□□□□□ -0.32
HDAC4-210ENST00000493582 SNCBQ16143 134 aa13.07□□□□□ -0.32
HDAC4-210ENST00000493582 CYB5D1Q6P9G0 228 aa13.07□□□□□ -0.32
HDAC4-210ENST00000493582 KRT26Q7Z3Y9 468 aa13.07□□□□□ -0.32
HDAC4-210ENST00000493582 STIM2Q9P246 746 aa13.07□□□□□ -0.32
HDAC4-210ENST00000493582 SNX12Q9UMY4 172 aa13.07□□□□□ -0.32
HDAC4-210ENST00000493582 ADAMTS13Q76LX8 1427 aa13.06□□□□□ -0.32
HDAC4-210ENST00000493582 ESYT3A0FGR9 886 aa13.06□□□□□ -0.32
HDAC4-210ENST00000493582 TRIM49BA6NDI0 452 aa13.06□□□□□ -0.32
HDAC4-210ENST00000493582 PATL2C9JE40 543 aaKnown RBP13.06□□□□□ -0.32
HDAC4-210ENST00000493582 NR1D1P20393 614 aa13.06□□□□□ -0.32
HDAC4-210ENST00000493582 PAK1Q13153 545 aa13.06□□□□□ -0.32
HDAC4-210ENST00000493582 AMOTQ4VCS5 1084 aa13.06□□□□□ -0.32
HDAC4-210ENST00000493582 EMBQ6PCB8 327 aa13.06□□□□□ -0.32
HDAC4-210ENST00000493582 KDM7AQ6ZMT4 941 aa13.06□□□□□ -0.32
HDAC4-210ENST00000493582 MB21D1Q8N884 522 aa13.06□□□□□ -0.32
HDAC4-210ENST00000493582 FOXP1Q9H334 677 aaPredicted RBP13.06□□□□□ -0.32
HDAC4-210ENST00000493582 NHEJ1Q9H9Q4 299 aaPredicted RBP13.06□□□□□ -0.32
HDAC4-210ENST00000493582 DIP2BQ9P265 1576 aa13.06□□□□□ -0.32
HDAC4-210ENST00000493582 ANO9A1A5B4 782 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms