RNA–Protein interactions for RNA: ENST00000492170.1

MRPL55-231, Transcript of mitochondrial ribosomal protein L55, human

TSL 5

Gene MRPL55, Length 241 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MRPL55-231	ENST00000492170	LRCH3	Q96II8	777 aa		18.37	■□□□□ 0.53
MRPL55-231	ENST00000492170	ZFY	P08048	801 aa	Predicted RBP	18.36	■□□□□ 0.53
MRPL55-231	ENST00000492170	TSHZ3	Q63HK5	1081 aa		18.36	■□□□□ 0.53
MRPL55-231	ENST00000492170	TDH	Q8IZJ6	230 aa		18.36	■□□□□ 0.53
MRPL55-231	ENST00000492170	UBE2O	Q9C0C9	1292 aa	Known RBP	18.36	■□□□□ 0.53
MRPL55-231	ENST00000492170	MKNK2	Q9HBH9	465 aa		18.36	■□□□□ 0.53
MRPL55-231	ENST00000492170	PPP1R9A	Q9ULJ8	1098 aa		18.36	■□□□□ 0.53
MRPL55-231	ENST00000492170	ROBO3	Q96MS0	1386 aa		18.35	■□□□□ 0.53
MRPL55-231	ENST00000492170	GSG1L2	A8MUP6	293 aa		18.35	■□□□□ 0.53
MRPL55-231	ENST00000492170	RNF113A	O15541	343 aa	Known RBP	18.35	■□□□□ 0.53
MRPL55-231	ENST00000492170	SEPT4	O43236	478 aa		18.35	■□□□□ 0.53
MRPL55-231	ENST00000492170	COPB2	P35606	906 aa		18.35	■□□□□ 0.53
MRPL55-231	ENST00000492170	LRRFIP1	Q32MZ4	808 aa	Known RBP	18.35	■□□□□ 0.53
MRPL55-231	ENST00000492170	FAM83B	Q5T0W9	1011 aa		18.35	■□□□□ 0.53
MRPL55-231	ENST00000492170	ARRDC4	Q8NCT1	418 aa		18.35	■□□□□ 0.53
MRPL55-231	ENST00000492170	OSBP2	Q969R2	916 aa		18.35	■□□□□ 0.53
MRPL55-231	ENST00000492170	MAML3	Q96JK9	1138 aa		18.35	■□□□□ 0.53
MRPL55-231	ENST00000492170	MMP19	Q99542	508 aa		18.35	■□□□□ 0.53
MRPL55-231	ENST00000492170	FBXO28	Q9NVF7	368 aa		18.35	■□□□□ 0.53
MRPL55-231	ENST00000492170	ADAMTS5	Q9UNA0	930 aa		18.35	■□□□□ 0.53
MRPL55-231	ENST00000492170	PARP14	Q460N5	1801 aa		18.35	■□□□□ 0.53
MRPL55-231	ENST00000492170	MINDY4B	A8MYZ0	360 aa		18.34	■□□□□ 0.53
MRPL55-231	ENST00000492170	KBTBD13	C9JR72	458 aa		18.34	■□□□□ 0.53
MRPL55-231	ENST00000492170	VWA5A	O00534	786 aa		18.34	■□□□□ 0.53
MRPL55-231	ENST00000492170	GPAA1	O43292	621 aa		18.34	■□□□□ 0.53
MRPL55-231	ENST00000492170	GNAT2	P19087	354 aa		18.34	■□□□□ 0.53
MRPL55-231	ENST00000492170	RASA1	P20936	1047 aa		18.34	■□□□□ 0.53
MRPL55-231	ENST00000492170	RIOX2	Q8IUF8	465 aa		18.34	■□□□□ 0.53
MRPL55-231	ENST00000492170	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	18.34	■□□□□ 0.53
MRPL55-231	ENST00000492170	ZNF287	Q9HBT7	754 aa		18.34	■□□□□ 0.53
MRPL55-231	ENST00000492170	STAT3	P40763	770 aa		18.33	■□□□□ 0.52
MRPL55-231	ENST00000492170	TDO2	P48775	406 aa		18.33	■□□□□ 0.52
MRPL55-231	ENST00000492170	ATN1	P54259	1190 aa	Predicted RBP	18.33	■□□□□ 0.52
MRPL55-231	ENST00000492170	KCTD2	Q14681	263 aa		18.33	■□□□□ 0.52
MRPL55-231	ENST00000492170	LRIT3	Q3SXY7	679 aa		18.33	■□□□□ 0.52
MRPL55-231	ENST00000492170	GJC2	Q5T442	439 aa	Predicted RBP	18.33	■□□□□ 0.52
MRPL55-231	ENST00000492170	ANO1	Q5XXA6	986 aa		18.33	■□□□□ 0.52
MRPL55-231	ENST00000492170	GPR153	Q6NV75	609 aa		18.33	■□□□□ 0.52
MRPL55-231	ENST00000492170	STK11IP	Q8N1F8	1099 aa		18.33	■□□□□ 0.52
MRPL55-231	ENST00000492170	NYAP2	Q9P242	653 aa		18.33	■□□□□ 0.52
MRPL55-231	ENST00000492170	TTC41P	Q6P2S7	1318 aa		18.32	■□□□□ 0.52
MRPL55-231	ENST00000492170	GREB1L	Q9C091	1923 aa	Predicted RBP	18.32	■□□□□ 0.52
MRPL55-231	ENST00000492170	ERC2	O15083	957 aa		18.32	■□□□□ 0.52
MRPL55-231	ENST00000492170	APP	P05067	770 aa		18.32	■□□□□ 0.52
MRPL55-231	ENST00000492170	MDM2	Q00987	491 aa	Predicted RBP	18.32	■□□□□ 0.52
MRPL55-231	ENST00000492170	LBHD1	Q9BQE6	289 aa	Predicted RBP	18.32	■□□□□ 0.52
MRPL55-231	ENST00000492170	SLF1	Q9BQI6	1058 aa		18.32	■□□□□ 0.52
MRPL55-231	ENST00000492170	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	18.32	■□□□□ 0.52
MRPL55-231	ENST00000492170	PRKAG2	Q9UGJ0	569 aa		18.32	■□□□□ 0.52
MRPL55-231	ENST00000492170	NRBP1	Q9UHY1	535 aa		18.32	■□□□□ 0.52
MRPL55-231	ENST00000492170	ZNF214	Q9UL59	606 aa	Predicted RBP	18.32	■□□□□ 0.52
MRPL55-231	ENST00000492170	COL11A1	P12107	1806 aa	Predicted RBP	18.31	■□□□□ 0.52
MRPL55-231	ENST00000492170		M0R2C6	588 aa		18.31	■□□□□ 0.52
MRPL55-231	ENST00000492170	MYCN	P04198	464 aa	Predicted RBP	18.31	■□□□□ 0.52
MRPL55-231	ENST00000492170	RTP1	P59025	263 aa		18.31	■□□□□ 0.52
MRPL55-231	ENST00000492170	PRAMEF19	Q5SWL8	479 aa		18.31	■□□□□ 0.52
MRPL55-231	ENST00000492170	REPS2	Q8NFH8	660 aa		18.31	■□□□□ 0.52
MRPL55-231	ENST00000492170	NUP88	Q99567	741 aa	Predicted RBP	18.31	■□□□□ 0.52
MRPL55-231	ENST00000492170	DIS3	Q9Y2L1	958 aa	Known RBP	18.31	■□□□□ 0.52
MRPL55-231	ENST00000492170		F5H6K3	240 aa		18.3	■□□□□ 0.52
MRPL55-231	ENST00000492170	NDUFB10	O96000	172 aa		18.3	■□□□□ 0.52
MRPL55-231	ENST00000492170	PGK2	P07205	417 aa		18.3	■□□□□ 0.52
MRPL55-231	ENST00000492170	KLRC3	Q07444	240 aa		18.3	■□□□□ 0.52
MRPL55-231	ENST00000492170	ZNF444	Q8N0Y2	327 aa	Predicted RBP	18.3	■□□□□ 0.52
MRPL55-231	ENST00000492170	TEX13B	Q9BXU2	312 aa		18.3	■□□□□ 0.52
MRPL55-231	ENST00000492170	NACAP1	Q9BZK3	213 aa		18.3	■□□□□ 0.52
MRPL55-231	ENST00000492170	PATL2	C9JE40	543 aa	Known RBP	18.29	■□□□□ 0.52
MRPL55-231	ENST00000492170	ZNF792	Q3KQV3	632 aa		18.29	■□□□□ 0.52
MRPL55-231	ENST00000492170	FAM47A	Q5JRC9	791 aa		18.29	■□□□□ 0.52
MRPL55-231	ENST00000492170	TINF2	Q9BSI4	451 aa		18.29	■□□□□ 0.52
MRPL55-231	ENST00000492170	FSD1	Q9BTV5	496 aa		18.29	■□□□□ 0.52
MRPL55-231	ENST00000492170	CLIP2	Q9UDT6	1046 aa		18.29	■□□□□ 0.52
MRPL55-231	ENST00000492170	ATP11B	Q9Y2G3	1177 aa		18.29	■□□□□ 0.52
MRPL55-231	ENST00000492170	CTDP1	Q9Y5B0	961 aa	Predicted RBP	18.29	■□□□□ 0.52
MRPL55-231	ENST00000492170	IGKV6D-41	A0A0C4DH26	115 aa		18.28	■□□□□ 0.52
MRPL55-231	ENST00000492170	PRDM1	O75626	825 aa		18.28	■□□□□ 0.52
MRPL55-231	ENST00000492170	RARB	P10826	455 aa		18.28	■□□□□ 0.52
MRPL55-231	ENST00000492170	LRRC41	Q15345	812 aa		18.28	■□□□□ 0.52
MRPL55-231	ENST00000492170	SNRNP48	Q6IEG0	339 aa	Known RBP	18.28	■□□□□ 0.52
MRPL55-231	ENST00000492170	SLC39A5	Q6ZMH5	540 aa		18.28	■□□□□ 0.52
MRPL55-231	ENST00000492170	IFNL3	Q8IZI9	196 aa		18.28	■□□□□ 0.52
MRPL55-231	ENST00000492170	DEFB123	Q8N688	67 aa		18.28	■□□□□ 0.52
MRPL55-231	ENST00000492170	PRPF38A	Q8NAV1	312 aa	Known RBP	18.28	■□□□□ 0.52
MRPL55-231	ENST00000492170	PI4K2B	Q8TCG2	481 aa		18.28	■□□□□ 0.52
MRPL55-231	ENST00000492170	SYNPO2	Q9UMS6	1093 aa		18.28	■□□□□ 0.52
MRPL55-231	ENST00000492170	PCDHB15	Q9Y5E8	787 aa		18.28	■□□□□ 0.52
MRPL55-231	ENST00000492170	COL6A3	P12111	3177 aa		18.27	■□□□□ 0.52
MRPL55-231	ENST00000492170	TTLL1	O95922	423 aa		18.27	■□□□□ 0.52
MRPL55-231	ENST00000492170	SLC3A2	P08195	630 aa	Known RBP	18.27	■□□□□ 0.52
MRPL55-231	ENST00000492170	PDE4B	Q07343	736 aa		18.27	■□□□□ 0.52
MRPL55-231	ENST00000492170	CEP95	Q96GE4	821 aa		18.27	■□□□□ 0.52
MRPL55-231	ENST00000492170	NAPB	Q9H115	298 aa		18.27	■□□□□ 0.52
MRPL55-231	ENST00000492170	XPNPEP3	Q9NQH7	507 aa		18.27	■□□□□ 0.52
MRPL55-231	ENST00000492170	CNPY2	Q9Y2B0	182 aa		18.27	■□□□□ 0.52
MRPL55-231	ENST00000492170	PLIN4	Q96Q06	1357 aa		18.27	■□□□□ 0.51
MRPL55-231	ENST00000492170	ZNFX1	Q9P2E3	1918 aa	Known RBP	18.27	■□□□□ 0.51
MRPL55-231	ENST00000492170	ZBED4	O75132	1171 aa		18.26	■□□□□ 0.51
MRPL55-231	ENST00000492170	TSPY3	P0CV98	308 aa		18.26	■□□□□ 0.51
MRPL55-231	ENST00000492170	TSPY8	P0CW00	308 aa		18.26	■□□□□ 0.51
MRPL55-231	ENST00000492170	AKR1A1	P14550	325 aa		18.26	■□□□□ 0.51

Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms