RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 ARL6IP4Q66PJ3 421 aaKnown RBP12.29□□□□□ -0.44
USP4-214ENST00000491791 PODNQ7Z5L7 613 aa12.29□□□□□ -0.44
USP4-214ENST00000491791 SLC51AQ86UW1 340 aa12.29□□□□□ -0.44
USP4-214ENST00000491791 METTL16Q86W50 562 aaKnown RBP12.29□□□□□ -0.44
USP4-214ENST00000491791 MPNDQ8N594 471 aa12.29□□□□□ -0.44
USP4-214ENST00000491791 CLIC6Q96NY7 704 aa12.29□□□□□ -0.44
USP4-214ENST00000491791 EYA3Q99504 573 aa12.29□□□□□ -0.44
USP4-214ENST00000491791 TMEM47Q9BQJ4 181 aa12.29□□□□□ -0.44
USP4-214ENST00000491791 TRIM5Q9C035 493 aa12.29□□□□□ -0.44
USP4-214ENST00000491791 DAGLAQ9Y4D2 1042 aa12.29□□□□□ -0.44
USP4-214ENST00000491791 LTBP3Q9NS15 1303 aa12.29□□□□□ -0.44
USP4-214ENST00000491791 MYH1P12882 1939 aa12.29□□□□□ -0.44
USP4-214ENST00000491791 IGKV6D-41A0A0C4DH26 115 aa12.28□□□□□ -0.44
USP4-214ENST00000491791 C6orf229H3BNL8 230 aa12.28□□□□□ -0.44
USP4-214ENST00000491791 hCG_1984214I3L0E3 225 aa12.28□□□□□ -0.44
USP4-214ENST00000491791 ACTN4O43707 911 aaKnown RBP12.28□□□□□ -0.44
USP4-214ENST00000491791 TSPY3P0CV98 308 aa12.28□□□□□ -0.44
USP4-214ENST00000491791 TSPY8P0CW00 308 aa12.28□□□□□ -0.44
USP4-214ENST00000491791 TOP1P11387 765 aaKnown RBP12.28□□□□□ -0.44
USP4-214ENST00000491791 SEMA3FQ13275 785 aa12.28□□□□□ -0.44
USP4-214ENST00000491791 DPCR1Q3MIW9 517 aa12.28□□□□□ -0.44
USP4-214ENST00000491791 COL13A1Q5TAT6 717 aaPredicted RBP12.28□□□□□ -0.44
USP4-214ENST00000491791 SH3RF1Q7Z6J0 888 aa12.28□□□□□ -0.44
USP4-214ENST00000491791 TNS4Q8IZW8 715 aa12.28□□□□□ -0.44
USP4-214ENST00000491791 CCDC82Q8N4S0 544 aa12.28□□□□□ -0.44
USP4-214ENST00000491791 ZNF713Q8N859 430 aaPredicted RBP12.28□□□□□ -0.44
USP4-214ENST00000491791 DYNLL2Q96FJ2 89 aa12.28□□□□□ -0.44
USP4-214ENST00000491791 GPR101Q96P66 508 aaPredicted RBP12.28□□□□□ -0.44
USP4-214ENST00000491791 ZC3H12CQ9C0D7 883 aaKnown RBP12.28□□□□□ -0.44
USP4-214ENST00000491791 OSBPL5Q9H0X9 879 aaPredicted RBP12.28□□□□□ -0.44
USP4-214ENST00000491791 KCNF1Q9H3M0 494 aa12.28□□□□□ -0.44
USP4-214ENST00000491791 KCND1Q9NSA2 647 aa12.28□□□□□ -0.44
USP4-214ENST00000491791 IMPACTQ9P2X3 320 aa12.28□□□□□ -0.44
USP4-214ENST00000491791 SWAP70Q9UH65 585 aa12.28□□□□□ -0.44
USP4-214ENST00000491791 PCDHA4Q9UN74 947 aa12.28□□□□□ -0.44
USP4-214ENST00000491791 JAG2Q9Y219 1238 aa12.28□□□□□ -0.44
USP4-214ENST00000491791 ZNF646O15015 1829 aaPredicted RBP12.27□□□□□ -0.44
USP4-214ENST00000491791 IQCA1LA6NCM1 817 aa12.27□□□□□ -0.45
USP4-214ENST00000491791 ORC2Q13416 577 aaPredicted RBP12.27□□□□□ -0.45
USP4-214ENST00000491791 NOLC1Q14978 699 aaKnown RBP eCLIP12.27□□□□□ -0.45
USP4-214ENST00000491791 EARS2Q5JPH6 523 aaKnown RBP12.27□□□□□ -0.45
USP4-214ENST00000491791 PPP4R3BQ5MIZ7 849 aa12.27□□□□□ -0.45
USP4-214ENST00000491791 TTC38Q5R3I4 469 aa12.27□□□□□ -0.45
USP4-214ENST00000491791 CC2D2BQ6DHV5 1058 aa12.27□□□□□ -0.45
USP4-214ENST00000491791 FOXP4Q8IVH2 680 aaPredicted RBP12.27□□□□□ -0.45
USP4-214ENST00000491791 MAPKAPK5Q8IW41 473 aa12.27□□□□□ -0.45
USP4-214ENST00000491791 MLKLQ8NB16 471 aa12.27□□□□□ -0.45
USP4-214ENST00000491791 CNNM3Q8NE01 707 aa12.27□□□□□ -0.45
USP4-214ENST00000491791 CCDC148Q8NFR7 591 aa12.27□□□□□ -0.45
USP4-214ENST00000491791 CCDC34Q96HJ3 373 aa12.27□□□□□ -0.45
USP4-214ENST00000491791 EHD4Q9H223 541 aa12.27□□□□□ -0.45
USP4-214ENST00000491791 GREB1LQ9C091 1923 aaPredicted RBP12.27□□□□□ -0.45
USP4-214ENST00000491791 ESYT2A0FGR8 921 aa12.26□□□□□ -0.45
USP4-214ENST00000491791 SLFN14P0C7P3 912 aa12.26□□□□□ -0.45
USP4-214ENST00000491791 SNHG28P0DPA3 235 aa12.26□□□□□ -0.45
USP4-214ENST00000491791 TPM4P67936 248 aa12.26□□□□□ -0.45
USP4-214ENST00000491791 GTF2IP78347 998 aa12.26□□□□□ -0.45
USP4-214ENST00000491791 SLC35G1Q2M3R5 365 aa12.26□□□□□ -0.45
USP4-214ENST00000491791 GRIPAP1Q4V328 841 aa12.26□□□□□ -0.45
USP4-214ENST00000491791 CHADLQ6NUI6 762 aa12.26□□□□□ -0.45
USP4-214ENST00000491791 BLIDQ8IZY5 108 aa12.26□□□□□ -0.45
USP4-214ENST00000491791 CERS5Q8N5B7 392 aa12.26□□□□□ -0.45
USP4-214ENST00000491791 AOPEPQ8N6M6 819 aa12.26□□□□□ -0.45
USP4-214ENST00000491791 C4orf32Q8N8J7 132 aa12.26□□□□□ -0.45
USP4-214ENST00000491791 TTC12Q9H892 705 aaPredicted RBP12.26□□□□□ -0.45
USP4-214ENST00000491791 BARHL2Q9NY43 387 aa12.26□□□□□ -0.45
USP4-214ENST00000491791 PCDHA5Q9Y5H7 936 aa12.26□□□□□ -0.45
USP4-214ENST00000491791 USP17L3A6NCW0 530 aa12.25□□□□□ -0.45
USP4-214ENST00000491791 USP17L4A6NCW7 530 aa12.25□□□□□ -0.45
USP4-214ENST00000491791 LAD1O00515 517 aa12.25□□□□□ -0.45
USP4-214ENST00000491791 CYTH3O43739 400 aa12.25□□□□□ -0.45
USP4-214ENST00000491791 TPM2P07951 284 aa12.25□□□□□ -0.45
USP4-214ENST00000491791 HSPA1AP0DMV8 641 aaKnown RBP12.25□□□□□ -0.45
USP4-214ENST00000491791 HSPA1BP0DMV9 641 aaKnown RBP12.25□□□□□ -0.45
USP4-214ENST00000491791 GSDMDP57764 484 aa12.25□□□□□ -0.45
USP4-214ENST00000491791 NLRP5P59047 1200 aa12.25□□□□□ -0.45
USP4-214ENST00000491791 MYL5Q02045 173 aa12.25□□□□□ -0.45
USP4-214ENST00000491791 GRIN1Q05586 938 aa12.25□□□□□ -0.45
USP4-214ENST00000491791 MORC3Q14149 939 aa12.25□□□□□ -0.45
USP4-214ENST00000491791 POSTNQ15063 836 aa12.25□□□□□ -0.45
USP4-214ENST00000491791 CCDC93Q567U6 631 aa12.25□□□□□ -0.45
USP4-214ENST00000491791 DPP8Q6V1X1 898 aaPredicted RBP12.25□□□□□ -0.45
USP4-214ENST00000491791 USP17L1Q7RTZ2 530 aa12.25□□□□□ -0.45
USP4-214ENST00000491791 CCDC186Q7Z3E2 898 aa12.25□□□□□ -0.45
USP4-214ENST00000491791 STAG2Q8N3U4 1231 aa12.25□□□□□ -0.45
USP4-214ENST00000491791 CCDC12Q8WUD4 166 aaPredicted RBP12.25□□□□□ -0.45
USP4-214ENST00000491791 ZDHHC15Q96MV8 337 aa12.25□□□□□ -0.45
USP4-214ENST00000491791 ZMYND12Q9H0C1 365 aa12.25□□□□□ -0.45
USP4-214ENST00000491791 CSRNP2Q9H175 543 aa12.25□□□□□ -0.45
USP4-214ENST00000491791 TMX4Q9H1E5 349 aaPredicted RBP12.25□□□□□ -0.45
USP4-214ENST00000491791 HSD3B7Q9H2F3 369 aa12.25□□□□□ -0.45
USP4-214ENST00000491791 RIOX1Q9H6W3 641 aa12.25□□□□□ -0.45
USP4-214ENST00000491791 CREBZFQ9NS37 354 aa12.25□□□□□ -0.45
USP4-214ENST00000491791 CLIP2Q9UDT6 1046 aa12.25□□□□□ -0.45
USP4-214ENST00000491791 DACH1Q9UI36 760 aa12.25□□□□□ -0.45
USP4-214ENST00000491791 FAM205CA6NFA0 338 aa12.24□□□□□ -0.45
USP4-214ENST00000491791 POTECB2RU33 542 aa12.24□□□□□ -0.45
USP4-214ENST00000491791 STXBP3O00186 592 aa12.24□□□□□ -0.45
USP4-214ENST00000491791 POLR2DO15514 142 aaKnown RBP12.24□□□□□ -0.45
USP4-214ENST00000491791 CAPN15O75808 1086 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms