RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 TMEM106CQ9BVX2 250 aa21.51■■□□□ 1.03
COL9A3-214ENST00000490398 A0A0G2JMZ2 1700 aa21.51■■□□□ 1.03
COL9A3-214ENST00000490398 TSPY2A6NKD2 308 aa21.5■■□□□ 1.03
COL9A3-214ENST00000490398 RANBP6O60518 1105 aaKnown RBP21.5■■□□□ 1.03
COL9A3-214ENST00000490398 TTLL1O95922 423 aa21.5■■□□□ 1.03
COL9A3-214ENST00000490398 TMEM132BQ14DG7 1078 aa21.5■■□□□ 1.03
COL9A3-214ENST00000490398 CCL14Q16627 93 aa21.5■■□□□ 1.03
COL9A3-214ENST00000490398 RRP12Q5JTH9 1297 aaKnown RBP21.5■■□□□ 1.03
COL9A3-214ENST00000490398 WDR78Q5VTH9 848 aa21.5■■□□□ 1.03
COL9A3-214ENST00000490398 TRIB2Q92519 343 aa21.5■■□□□ 1.03
COL9A3-214ENST00000490398 SHISA4Q96DD7 197 aa21.5■■□□□ 1.03
COL9A3-214ENST00000490398 SPATC1LQ9H0A9 340 aa21.5■■□□□ 1.03
COL9A3-214ENST00000490398 ADAMTS5Q9UNA0 930 aa21.5■■□□□ 1.03
COL9A3-214ENST00000490398 HIP1O00291 1037 aa21.49■■□□□ 1.03
COL9A3-214ENST00000490398 CCAR1Q8IX12 1150 aaKnown RBP21.49■■□□□ 1.03
COL9A3-214ENST00000490398 REPS2Q8NFH8 660 aa21.49■■□□□ 1.03
COL9A3-214ENST00000490398 NUDT12Q9BQG2 462 aa21.49■■□□□ 1.03
COL9A3-214ENST00000490398 PPP1R9AQ9ULJ8 1098 aa21.49■■□□□ 1.03
COL9A3-214ENST00000490398 PTPREP23469 700 aa21.48■■□□□ 1.03
COL9A3-214ENST00000490398 CHMLP26374 656 aa21.48■■□□□ 1.03
COL9A3-214ENST00000490398 MFAP1P55081 439 aaKnown RBP21.48■■□□□ 1.03
COL9A3-214ENST00000490398 UBXN2AP68543 259 aa21.48■■□□□ 1.03
COL9A3-214ENST00000490398 CCNA1P78396 465 aa21.48■■□□□ 1.03
COL9A3-214ENST00000490398 PLS1Q14651 629 aa21.48■■□□□ 1.03
COL9A3-214ENST00000490398 SLFN13Q68D06 897 aa21.48■■□□□ 1.03
COL9A3-214ENST00000490398 RNF208Q9H0X6 261 aa21.48■■□□□ 1.03
COL9A3-214ENST00000490398 TOMM22Q9NS69 142 aa21.48■■□□□ 1.03
COL9A3-214ENST00000490398 STX8Q9UNK0 236 aa21.48■■□□□ 1.03
COL9A3-214ENST00000490398 NEDD4P46934 1319 aa21.48■■□□□ 1.03
COL9A3-214ENST00000490398 RBBP6Q7Z6E9 1792 aaKnown RBP21.48■■□□□ 1.03
COL9A3-214ENST00000490398 PARP14Q460N5 1801 aa21.48■■□□□ 1.03
COL9A3-214ENST00000490398 ERCC3P19447 782 aa21.47■■□□□ 1.03
COL9A3-214ENST00000490398 NOVP48745 357 aa21.47■■□□□ 1.03
COL9A3-214ENST00000490398 GMCL1P1Q8NEA9 526 aa21.47■■□□□ 1.03
COL9A3-214ENST00000490398 STAG1Q8WVM7 1258 aa21.47■■□□□ 1.03
COL9A3-214ENST00000490398 SOCS4Q8WXH5 440 aa21.47■■□□□ 1.03
COL9A3-214ENST00000490398 CWC22Q9HCG8 908 aaKnown RBP21.47■■□□□ 1.03
COL9A3-214ENST00000490398 FLRT1Q9NZU1 646 aa21.47■■□□□ 1.03
COL9A3-214ENST00000490398 VWA5AO00534 786 aa21.46■■□□□ 1.03
COL9A3-214ENST00000490398 MAP2K5Q13163 448 aa21.46■■□□□ 1.03
COL9A3-214ENST00000490398 GRB14Q14449 540 aa21.46■■□□□ 1.03
COL9A3-214ENST00000490398 AKNAD1Q5T1N1 836 aa21.46■■□□□ 1.03
COL9A3-214ENST00000490398 MB21D1Q8N884 522 aa21.46■■□□□ 1.03
COL9A3-214ENST00000490398 SLF1Q9BQI6 1058 aa21.46■■□□□ 1.03
COL9A3-214ENST00000490398 DSCC1Q9BVC3 393 aa21.46■■□□□ 1.03
COL9A3-214ENST00000490398 ZNF214Q9UL59 606 aaPredicted RBP21.46■■□□□ 1.03
COL9A3-214ENST00000490398 ZNF213O14771 459 aa21.45■■□□□ 1.02
COL9A3-214ENST00000490398 HMGCRP04035 888 aa21.45■■□□□ 1.02
COL9A3-214ENST00000490398 GJB1P08034 283 aa21.45■■□□□ 1.02
COL9A3-214ENST00000490398 RGS2P41220 211 aa21.45■■□□□ 1.02
COL9A3-214ENST00000490398 PTH1RQ03431 593 aa21.45■■□□□ 1.02
COL9A3-214ENST00000490398 CENPQQ7L2Z9 268 aaPredicted RBP21.45■■□□□ 1.02
COL9A3-214ENST00000490398 NPLOC4Q8TAT6 608 aa21.45■■□□□ 1.02
COL9A3-214ENST00000490398 MYH4Q9Y623 1939 aa21.45■■□□□ 1.02
COL9A3-214ENST00000490398 SLC15A5A6NIM6 579 aa21.44■■□□□ 1.02
COL9A3-214ENST00000490398 BMP3P12645 472 aa21.44■■□□□ 1.02
COL9A3-214ENST00000490398 XRCC5P13010 732 aaKnown RBP21.44■■□□□ 1.02
COL9A3-214ENST00000490398 MCCP23508 829 aa21.44■■□□□ 1.02
COL9A3-214ENST00000490398 MFSD6Q6ZSS7 791 aa21.44■■□□□ 1.02
COL9A3-214ENST00000490398 NCAPG2Q86XI2 1143 aa21.44■■□□□ 1.02
COL9A3-214ENST00000490398 SHCBP1Q8NEM2 672 aa21.44■■□□□ 1.02
COL9A3-214ENST00000490398 KIFC2Q96AC6 838 aa21.44■■□□□ 1.02
COL9A3-214ENST00000490398 SYNPO2Q9UMS6 1093 aa21.44■■□□□ 1.02
COL9A3-214ENST00000490398 MTMR7Q9Y216 660 aa21.44■■□□□ 1.02
COL9A3-214ENST00000490398 COBLO75128 1261 aa21.43■■□□□ 1.02
COL9A3-214ENST00000490398 GJA8P48165 433 aa21.43■■□□□ 1.02
COL9A3-214ENST00000490398 RCSD1Q6JBY9 416 aa21.43■■□□□ 1.02
COL9A3-214ENST00000490398 U2AF1L4Q8WU68 220 aaKnown RBP21.43■■□□□ 1.02
COL9A3-214ENST00000490398 DEFB118Q96PH6 123 aa21.43■■□□□ 1.02
COL9A3-214ENST00000490398 APBA2Q99767 749 aa21.43■■□□□ 1.02
COL9A3-214ENST00000490398 TMEM47Q9BQJ4 181 aa21.43■■□□□ 1.02
COL9A3-214ENST00000490398 ZKSCAN3Q9BRR0 538 aa21.43■■□□□ 1.02
COL9A3-214ENST00000490398 PAK6Q9NQU5 681 aaPredicted RBP21.43■■□□□ 1.02
COL9A3-214ENST00000490398 RIPK3Q9Y572 518 aa21.43■■□□□ 1.02
COL9A3-214ENST00000490398 TMEM232C9JQI7 657 aa21.42■■□□□ 1.02
COL9A3-214ENST00000490398 ZKSCAN1P17029 563 aaPredicted RBP21.42■■□□□ 1.02
COL9A3-214ENST00000490398 ADORA2AP29274 412 aa21.42■■□□□ 1.02
COL9A3-214ENST00000490398 STAT3P40763 770 aa21.42■■□□□ 1.02
COL9A3-214ENST00000490398 CACNB2Q08289 660 aaPredicted RBP21.42■■□□□ 1.02
COL9A3-214ENST00000490398 MAP3K21Q5TCX8 1036 aa21.42■■□□□ 1.02
COL9A3-214ENST00000490398 KCTD1Q719H9 257 aa21.42■■□□□ 1.02
COL9A3-214ENST00000490398 RIOX2Q8IUF8 465 aa21.42■■□□□ 1.02
COL9A3-214ENST00000490398 GMCL1Q96IK5 515 aa21.42■■□□□ 1.02
COL9A3-214ENST00000490398 XRN2Q9H0D6 950 aaKnown RBP eCLIP21.42■■□□□ 1.02
COL9A3-214ENST00000490398 TCP11L1Q9NUJ3 509 aa21.42■■□□□ 1.02
COL9A3-214ENST00000490398 TAF6LQ9Y6J9 622 aa21.42■■□□□ 1.02
COL9A3-214ENST00000490398 COL11A1P12107 1806 aaPredicted RBP21.41■■□□□ 1.02
COL9A3-214ENST00000490398 SGSM2O43147 1006 aa21.41■■□□□ 1.02
COL9A3-214ENST00000490398 SGPL1O95470 568 aa21.41■■□□□ 1.02
COL9A3-214ENST00000490398 HOXC6P09630 235 aa21.41■■□□□ 1.02
COL9A3-214ENST00000490398 PRKAR2AP13861 404 aaKnown RBP21.41■■□□□ 1.02
COL9A3-214ENST00000490398 SNAP25P60880 206 aa21.41■■□□□ 1.02
COL9A3-214ENST00000490398 PRPF38AQ8NAV1 312 aaKnown RBP21.41■■□□□ 1.02
COL9A3-214ENST00000490398 MROH8Q9H579 483 aa21.41■■□□□ 1.02
COL9A3-214ENST00000490398 FEM1BQ9UK73 627 aa21.41■■□□□ 1.02
COL9A3-214ENST00000490398 ISY1Q9ULR0 285 aaKnown RBP21.41■■□□□ 1.02
COL9A3-214ENST00000490398 IVNS1ABPQ9Y6Y0 642 aa21.41■■□□□ 1.02
COL9A3-214ENST00000490398 RAD50Q92878 1312 aa21.4■■□□□ 1.02
COL9A3-214ENST00000490398 IGHA2P01877 340 aa21.4■■□□□ 1.02
COL9A3-214ENST00000490398 CCND3P30281 292 aaPredicted RBP21.4■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms