RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 CYP2C8P10632 490 aa6.89□□□□□ -1.31
CUX1-208ENST00000485792 CETPP11597 493 aa6.89□□□□□ -1.31
CUX1-208ENST00000485792 AKR1B1P15121 316 aa6.89□□□□□ -1.31
CUX1-208ENST00000485792 SNAPC2Q13487 334 aa6.89□□□□□ -1.31
CUX1-208ENST00000485792 SBK1Q52WX2 424 aa6.89□□□□□ -1.31
CUX1-208ENST00000485792 SWT1Q5T5J6 900 aaKnown RBP6.89□□□□□ -1.31
CUX1-208ENST00000485792 C12orf60Q5U649 245 aa6.89□□□□□ -1.31
CUX1-208ENST00000485792 ZSCAN25Q6NSZ9 544 aa6.89□□□□□ -1.31
CUX1-208ENST00000485792 CTR9Q6PD62 1173 aa6.89□□□□□ -1.31
CUX1-208ENST00000485792 ANKRD23Q86SG2 305 aa6.89□□□□□ -1.31
CUX1-208ENST00000485792 APPBP2Q92624 585 aa6.89□□□□□ -1.31
CUX1-208ENST00000485792 AIDAQ96BJ3 306 aa6.89□□□□□ -1.31
CUX1-208ENST00000485792 LRCH3Q96II8 777 aa6.89□□□□□ -1.31
CUX1-208ENST00000485792 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.89□□□□□ -1.314e-13■□□□□ 9.1
CUX1-208ENST00000485792 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.89□□□□□ -1.31
CUX1-208ENST00000485792 FAM217BQ9NTX9 383 aaPredicted RBP6.89□□□□□ -1.31
CUX1-208ENST00000485792 SERPINB13Q9UIV8 391 aa6.89□□□□□ -1.31
CUX1-208ENST00000485792 ZBTB21Q9ULJ3 1066 aa6.89□□□□□ -1.31
CUX1-208ENST00000485792 PLIN4Q96Q06 1357 aa6.88□□□□□ -1.31
CUX1-208ENST00000485792 CCL15-CCL14A0A0B4J2E2 113 aa6.88□□□□□ -1.31
CUX1-208ENST00000485792 IGKV6D-41A0A0C4DH26 115 aa6.88□□□□□ -1.31
CUX1-208ENST00000485792 GPAA1O43292 621 aa6.88□□□□□ -1.31
CUX1-208ENST00000485792 TLR2O60603 784 aa6.88□□□□□ -1.31
CUX1-208ENST00000485792 CNMDO75829 334 aa6.88□□□□□ -1.31
CUX1-208ENST00000485792 ASNSP08243 561 aa6.88□□□□□ -1.31
CUX1-208ENST00000485792 FGRP09769 529 aa6.88□□□□□ -1.31
CUX1-208ENST00000485792 HOXA7P31268 230 aaPredicted RBP6.88□□□□□ -1.31
CUX1-208ENST00000485792 CCL15Q16663 113 aa6.88□□□□□ -1.31
CUX1-208ENST00000485792 C17orf99Q6UX52 265 aa6.88□□□□□ -1.31
CUX1-208ENST00000485792 TTC6Q86TZ1 520 aa6.88□□□□□ -1.31
CUX1-208ENST00000485792 TBC1D10CQ8IV04 446 aa6.88□□□□□ -1.31
CUX1-208ENST00000485792 PROCA1Q8NCQ7 364 aaPredicted RBP6.88□□□□□ -1.31
CUX1-208ENST00000485792 EVI5LQ96CN4 794 aa6.88□□□□□ -1.31
CUX1-208ENST00000485792 GPATCH3Q96I76 525 aa6.88□□□□□ -1.31
CUX1-208ENST00000485792 C12orf42Q96LP6 360 aa6.88□□□□□ -1.31
CUX1-208ENST00000485792 NOL10Q9BSC4 688 aaKnown RBP6.88□□□□□ -1.31
CUX1-208ENST00000485792 BEGAINQ9BUH8 593 aa6.88□□□□□ -1.31
CUX1-208ENST00000485792 CRNKL1Q9BZJ0 848 aaKnown RBP6.88□□□□□ -1.31
CUX1-208ENST00000485792 TXNRD2Q9NNW7 524 aa6.88□□□□□ -1.31
CUX1-208ENST00000485792 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.88□□□□□ -1.31
CUX1-208ENST00000485792 DDX52Q9Y2R4 599 aaKnown RBP eCLIP6.88□□□□□ -1.31
CUX1-208ENST00000485792 ZHX2Q9Y6X8 837 aa6.88□□□□□ -1.31
CUX1-208ENST00000485792 BAZ2BQ9UIF8 2168 aaKnown RBP6.88□□□□□ -1.31
CUX1-208ENST00000485792 ZMYM6O95789 1325 aa6.87□□□□□ -1.31
CUX1-208ENST00000485792 TRIM75PA6NK02 468 aa6.87□□□□□ -1.31
CUX1-208ENST00000485792 USP17L5A8MUK1 530 aa6.87□□□□□ -1.31
CUX1-208ENST00000485792 PATL2C9JE40 543 aaKnown RBP6.87□□□□□ -1.31
CUX1-208ENST00000485792 RBAK-RBAKDNI3L0D1 243 aa6.87□□□□□ -1.31
CUX1-208ENST00000485792 GH2P01242 217 aa6.87□□□□□ -1.31
CUX1-208ENST00000485792 BCRP11274 1271 aa6.87□□□□□ -1.31
CUX1-208ENST00000485792 TAL1P17542 331 aaPredicted RBP6.87□□□□□ -1.31
CUX1-208ENST00000485792 GNAT2P19087 354 aa6.87□□□□□ -1.31
CUX1-208ENST00000485792 RASA1P20936 1047 aa6.87□□□□□ -1.31
CUX1-208ENST00000485792 NOVP48745 357 aa6.87□□□□□ -1.31
CUX1-208ENST00000485792 BACE1P56817 501 aa6.87□□□□□ -1.31
CUX1-208ENST00000485792 NMIQ13287 307 aaPredicted RBP6.87□□□□□ -1.31
CUX1-208ENST00000485792 MTMR2Q13614 643 aa6.87□□□□□ -1.31
CUX1-208ENST00000485792 ALX1Q15699 326 aa6.87□□□□□ -1.31
CUX1-208ENST00000485792 C16orf86Q6ZW13 317 aa6.87□□□□□ -1.31
CUX1-208ENST00000485792 ZSCAN29Q8IWY8 852 aaPredicted RBP6.87□□□□□ -1.31
CUX1-208ENST00000485792 ZNF280CQ8ND82 737 aa6.87□□□□□ -1.31
CUX1-208ENST00000485792 MCOLN1Q9GZU1 580 aa6.87□□□□□ -1.31
CUX1-208ENST00000485792 NEDD4P46934 1319 aa6.86□□□□□ -1.31
CUX1-208ENST00000485792 C19orf81C9J6K1 198 aa6.86□□□□□ -1.31
CUX1-208ENST00000485792 USP17L12C9JPN9 530 aa6.86□□□□□ -1.31
CUX1-208ENST00000485792 USP17L21D6R901 530 aa6.86□□□□□ -1.31
CUX1-208ENST00000485792 HLA-DOAP06340 250 aa6.86□□□□□ -1.31
CUX1-208ENST00000485792 SSTR3P32745 418 aaPredicted RBP6.86□□□□□ -1.31
CUX1-208ENST00000485792 USP5P45974 858 aa6.86□□□□□ -1.31
CUX1-208ENST00000485792 HMGCS2P54868 508 aa6.86□□□□□ -1.31
CUX1-208ENST00000485792 SEPT2Q15019 361 aa6.86□□□□□ -1.31
CUX1-208ENST00000485792 TTC22Q5TAA0 569 aa6.86□□□□□ -1.31
CUX1-208ENST00000485792 IFFO2Q5TF58 517 aa6.86□□□□□ -1.31
CUX1-208ENST00000485792 OTUD7BQ6GQQ9 843 aa6.86□□□□□ -1.31
CUX1-208ENST00000485792 FASTKD5Q7L8L6 764 aaKnown RBP6.86□□□□□ -1.31
CUX1-208ENST00000485792 CD99L2Q8TCZ2 262 aa6.86□□□□□ -1.31
CUX1-208ENST00000485792 HELLSQ9NRZ9 838 aa6.86□□□□□ -1.31
CUX1-208ENST00000485792 MCM9Q9NXL9 1143 aa6.86□□□□□ -1.31
CUX1-208ENST00000485792 SWAP70Q9UH65 585 aa6.86□□□□□ -1.31
CUX1-208ENST00000485792 ANAPC4Q9UJX5 808 aa6.86□□□□□ -1.31
CUX1-208ENST00000485792 KIAA1217Q5T5P2 1943 aa6.86□□□□□ -1.31
CUX1-208ENST00000485792 CEP290O15078 2479 aa6.85□□□□□ -1.31
CUX1-208ENST00000485792 DDX11L8A8MPP1 907 aa6.85□□□□□ -1.31
CUX1-208ENST00000485792 PDHXO00330 501 aa6.85□□□□□ -1.31
CUX1-208ENST00000485792 NMT2O60551 498 aa6.85□□□□□ -1.31
CUX1-208ENST00000485792 FKTNO75072 461 aa6.85□□□□□ -1.31
CUX1-208ENST00000485792 PRDM1O75626 825 aa6.85□□□□□ -1.31
CUX1-208ENST00000485792 SDSP20132 328 aa6.85□□□□□ -1.31
CUX1-208ENST00000485792 CDK8P49336 464 aa6.85□□□□□ -1.31
CUX1-208ENST00000485792 SPP2Q13103 211 aa6.85□□□□□ -1.31
CUX1-208ENST00000485792 PKN2Q16513 984 aaKnown RBP6.85□□□□□ -1.31
CUX1-208ENST00000485792 SLC35G1Q2M3R5 365 aa6.85□□□□□ -1.31
CUX1-208ENST00000485792 LRRFIP1Q32MZ4 808 aaKnown RBP6.85□□□□□ -1.31
CUX1-208ENST00000485792 CERKLQ49MI3 558 aaPredicted RBP6.85□□□□□ -1.31
CUX1-208ENST00000485792 LBX2Q6XYB7 198 aa6.85□□□□□ -1.31
CUX1-208ENST00000485792 STOX1Q6ZVD7 989 aa6.85□□□□□ -1.31
CUX1-208ENST00000485792 OTOP1Q7RTM1 612 aa6.85□□□□□ -1.31
CUX1-208ENST00000485792 IFNL3Q8IZI9 196 aa6.85□□□□□ -1.31
CUX1-208ENST00000485792 STK11IPQ8N1F8 1099 aa6.85□□□□□ -1.31
CUX1-208ENST00000485792 CCDC17Q96LX7 622 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms