RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 SSH1Q8WYL5 1049 aa9.4□□□□□ -0.9
USP54-213ENST00000481991 HERVK_113Q902F9 699 aa9.4□□□□□ -0.9
USP54-213ENST00000481991 SPC25Q9HBM1 224 aa9.4□□□□□ -0.9
USP54-213ENST00000481991 COPRSQ9NQ92 184 aa9.4□□□□□ -0.9
USP54-213ENST00000481991 SERPINB13Q9UIV8 391 aa9.4□□□□□ -0.9
USP54-213ENST00000481991 FAM184BQ9ULE4 1060 aa9.4□□□□□ -0.9
USP54-213ENST00000481991 YBX2Q9Y2T7 364 aaKnown RBP9.4□□□□□ -0.9
USP54-213ENST00000481991 ARIH1Q9Y4X5 557 aaPredicted RBP9.4□□□□□ -0.9
USP54-213ENST00000481991 RLFQ13129 1914 aa9.4□□□□□ -0.9
USP54-213ENST00000481991 SYNGAP1Q96PV0 1343 aa9.39□□□□□ -0.91
USP54-213ENST00000481991 SMIM22K7EJ46 135 aa9.39□□□□□ -0.91
USP54-213ENST00000481991 C6orf222P0C671 652 aaPredicted RBP9.39□□□□□ -0.91
USP54-213ENST00000481991 CCL23P55773 120 aa9.39□□□□□ -0.91
USP54-213ENST00000481991 PPP4CP60510 307 aa9.39□□□□□ -0.91
USP54-213ENST00000481991 CCDC158Q5M9N0 1113 aa9.39□□□□□ -0.91
USP54-213ENST00000481991 TATDN1Q6P1N9 297 aa9.39□□□□□ -0.91
USP54-213ENST00000481991 NOL8Q76FK4 1167 aaKnown RBP9.39□□□□□ -0.91
USP54-213ENST00000481991 ADGRA1Q86SQ6 560 aa9.39□□□□□ -0.91
USP54-213ENST00000481991 METTL16Q86W50 562 aaKnown RBP9.39□□□□□ -0.91
USP54-213ENST00000481991 SHCBP1Q8NEM2 672 aa9.39□□□□□ -0.91
USP54-213ENST00000481991 TINF2Q9BSI4 451 aa9.39□□□□□ -0.91
USP54-213ENST00000481991 TSEN34Q9BSV6 310 aaKnown RBP9.39□□□□□ -0.91
USP54-213ENST00000481991 IL23AQ9NPF7 189 aa9.39□□□□□ -0.91
USP54-213ENST00000481991 ZHX1Q9UKY1 873 aaPredicted RBP9.39□□□□□ -0.91
USP54-213ENST00000481991 SLC4A7Q9Y6M7 1214 aa9.39□□□□□ -0.91
USP54-213ENST00000481991 PLXNA1Q9UIW2 1896 aa9.38□□□□□ -0.91
USP54-213ENST00000481991 FRMPD3Q5JV73 1810 aa9.38□□□□□ -0.91
USP54-213ENST00000481991 MROH7Q68CQ1 1323 aa9.38□□□□□ -0.91
USP54-213ENST00000481991 CDH23Q9H251 3354 aa9.38□□□□□ -0.91
USP54-213ENST00000481991 MOXD2PA6NHM9 499 aa9.38□□□□□ -0.91
USP54-213ENST00000481991 ERC2O15083 957 aa9.38□□□□□ -0.91
USP54-213ENST00000481991 IDH1O75874 414 aaKnown RBP9.38□□□□□ -0.91
USP54-213ENST00000481991 DSG3P32926 999 aa9.38□□□□□ -0.91
USP54-213ENST00000481991 MRE11P49959 708 aa9.38□□□□□ -0.91
USP54-213ENST00000481991 IRX5P78411 483 aaPredicted RBP9.38□□□□□ -0.91
USP54-213ENST00000481991 OS9Q13438 667 aaPredicted RBP9.38□□□□□ -0.91
USP54-213ENST00000481991 CSPP1Q1MSJ5 1256 aa9.38□□□□□ -0.91
USP54-213ENST00000481991 GNASQ5JWF2 1037 aa9.38□□□□□ -0.91
USP54-213ENST00000481991 ABRAQ8N0Z2 381 aa9.38□□□□□ -0.91
USP54-213ENST00000481991 MB21D1Q8N884 522 aa9.38□□□□□ -0.91
USP54-213ENST00000481991 ATG4CQ96DT6 458 aa9.38□□□□□ -0.91
USP54-213ENST00000481991 DDX11Q96FC9 970 aa9.38□□□□□ -0.91
USP54-213ENST00000481991 SMC4Q9NTJ3 1288 aa9.38□□□□□ -0.91
USP54-213ENST00000481991 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.38□□□□□ -0.91
USP54-213ENST00000481991 SMCHD1A6NHR9 2005 aa9.38□□□□□ -0.91
USP54-213ENST00000481991 ARVCFO00192 962 aa9.37□□□□□ -0.91
USP54-213ENST00000481991 GPR37L1O60883 481 aa9.37□□□□□ -0.91
USP54-213ENST00000481991 SLC25A27O95847 323 aa9.37□□□□□ -0.91
USP54-213ENST00000481991 IGHA2P01877 340 aa9.37□□□□□ -0.91
USP54-213ENST00000481991 ASGR1P07306 291 aa9.37□□□□□ -0.91
USP54-213ENST00000481991 ARID4AP29374 1257 aaPredicted RBP9.37□□□□□ -0.91
USP54-213ENST00000481991 ZAP70P43403 619 aa9.37□□□□□ -0.91
USP54-213ENST00000481991 KRT40Q6A162 431 aa9.37□□□□□ -0.91
USP54-213ENST00000481991 PCSK9Q8NBP7 692 aaKnown RBP9.37□□□□□ -0.91
USP54-213ENST00000481991 ARNTL2Q8WYA1 636 aa9.37□□□□□ -0.91
USP54-213ENST00000481991 HLA-CQ95604 372 aa9.37□□□□□ -0.91
USP54-213ENST00000481991 HIPK3Q9H422 1215 aa9.37□□□□□ -0.91
USP54-213ENST00000481991 NRBP1Q9UHY1 535 aa9.37□□□□□ -0.91
USP54-213ENST00000481991 TBX21Q9UL17 535 aa9.37□□□□□ -0.91
USP54-213ENST00000481991 NOB1Q9ULX3 412 aaKnown RBP9.37□□□□□ -0.91
USP54-213ENST00000481991 CTDP1Q9Y5B0 961 aaPredicted RBP9.37□□□□□ -0.91
USP54-213ENST00000481991 SYNRGQ9UMZ2 1314 aa9.36□□□□□ -0.91
USP54-213ENST00000481991 A0A0U1RQG5 324 aaPredicted RBP9.36□□□□□ -0.91
USP54-213ENST00000481991 A0A1W2PRG0 241 aa9.36□□□□□ -0.91
USP54-213ENST00000481991 MYADML2A6NDP7 307 aa9.36□□□□□ -0.91
USP54-213ENST00000481991 TLL1O43897 1013 aa9.36□□□□□ -0.91
USP54-213ENST00000481991 CYP2E1P05181 493 aaPredicted RBP9.36□□□□□ -0.91
USP54-213ENST00000481991 ZNF865P0CJ78 1059 aaPredicted RBP9.36□□□□□ -0.91
USP54-213ENST00000481991 ATP2A2P16615 1042 aaKnown RBP9.36□□□□□ -0.91
USP54-213ENST00000481991 SSTR3P32745 418 aaPredicted RBP9.36□□□□□ -0.91
USP54-213ENST00000481991 STAT3P40763 770 aa9.36□□□□□ -0.91
USP54-213ENST00000481991 PLCD1P51178 756 aa9.36□□□□□ -0.91
USP54-213ENST00000481991 TMEM132BQ14DG7 1078 aa9.36□□□□□ -0.91
USP54-213ENST00000481991 TMEM67Q5HYA8 995 aa9.36□□□□□ -0.91
USP54-213ENST00000481991 RPUSD2Q8IZ73 545 aaKnown RBP9.36□□□□□ -0.91
USP54-213ENST00000481991 KHSRPQ92945 711 aaKnown RBP eCLIP9.36□□□□□ -0.91
USP54-213ENST00000481991 MEIS3Q99687 375 aa9.36□□□□□ -0.91
USP54-213ENST00000481991 COG5Q9UP83 839 aa9.36□□□□□ -0.91
USP54-213ENST00000481991 MTCH2Q9Y6C9 303 aa9.36□□□□□ -0.91
USP54-213ENST00000481991 ELP1O95163 1332 aa9.35□□□□□ -0.91
USP54-213ENST00000481991 ZNF521Q96K83 1311 aa9.35□□□□□ -0.91
USP54-213ENST00000481991 ZBTB22O15209 634 aa9.35□□□□□ -0.91
USP54-213ENST00000481991 ADAMTS4O75173 837 aa9.35□□□□□ -0.91
USP54-213ENST00000481991 GUCY1A2P33402 732 aa9.35□□□□□ -0.91
USP54-213ENST00000481991 CDK7P50613 346 aa9.35□□□□□ -0.91
USP54-213ENST00000481991 ZNF792Q3KQV3 632 aa9.35□□□□□ -0.91
USP54-213ENST00000481991 KIAA1755Q5JYT7 1200 aa9.35□□□□□ -0.91
USP54-213ENST00000481991 RASIP1Q5U651 963 aa9.35□□□□□ -0.91
USP54-213ENST00000481991 DEFB128Q7Z7B8 93 aa9.35□□□□□ -0.91
USP54-213ENST00000481991 MAGEB6Q8N7X4 407 aa9.35□□□□□ -0.91
USP54-213ENST00000481991 KLHDC9Q8NEP7 349 aa9.35□□□□□ -0.91
USP54-213ENST00000481991 SNX27Q96L92 541 aa9.35□□□□□ -0.91
USP54-213ENST00000481991 ARHGEF10LQ9HCE6 1279 aa9.35□□□□□ -0.91
USP54-213ENST00000481991 PIH1D3Q9NQM4 214 aaKnown RBP9.35□□□□□ -0.91
USP54-213ENST00000481991 MCM9Q9NXL9 1143 aa9.35□□□□□ -0.91
USP54-213ENST00000481991 PCDHA11Q9Y5I1 949 aa9.35□□□□□ -0.91
USP54-213ENST00000481991 MUC3AQ02505 3323 aa9.34□□□□□ -0.91
USP54-213ENST00000481991 PI4K2BG5E9Z4 385 aa9.34□□□□□ -0.91
USP54-213ENST00000481991 DUSP11O75319 330 aaKnown RBP9.34□□□□□ -0.91
USP54-213ENST00000481991 CA3P07451 260 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms