RNA–Protein interactions for RNA: ENST00000481484.1

VPS13D-208, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 360 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-208ENST00000481484 DDX4Q9NQI0 724 aaKnown RBP5.05□□□□□ -1.6
VPS13D-208ENST00000481484 PI4KBQ9UBF8 816 aa5.05□□□□□ -1.6
VPS13D-208ENST00000481484 LIMD1Q9UGP4 676 aa5.05□□□□□ -1.6
VPS13D-208ENST00000481484 AFG3L2Q9Y4W6 797 aa5.05□□□□□ -1.6
VPS13D-208ENST00000481484 MYH4Q9Y623 1939 aa5.05□□□□□ -1.6
VPS13D-208ENST00000481484 DNAH12Q6ZR08 3092 aa5.05□□□□□ -1.6
VPS13D-208ENST00000481484 PNMA6EA0A0J9YXQ4 647 aa5.04□□□□□ -1.6
VPS13D-208ENST00000481484 DDTLA6NHG4 134 aaPredicted RBP5.04□□□□□ -1.6
VPS13D-208ENST00000481484 USP17L5A8MUK1 530 aa5.04□□□□□ -1.6
VPS13D-208ENST00000481484 TNPO2O14787 897 aaKnown RBP5.04□□□□□ -1.6
VPS13D-208ENST00000481484 BCAR3O75815 825 aa5.04□□□□□ -1.6
VPS13D-208ENST00000481484 GRK4P32298 578 aa5.04□□□□□ -1.6
VPS13D-208ENST00000481484 TIMM10P62072 90 aa5.04□□□□□ -1.6
VPS13D-208ENST00000481484 IRX3P78415 501 aaPredicted RBP5.04□□□□□ -1.6
VPS13D-208ENST00000481484 ATP8B2P98198 1209 aa5.04□□□□□ -1.6
VPS13D-208ENST00000481484 MAP3K12Q12852 859 aa5.04□□□□□ -1.6
VPS13D-208ENST00000481484 SH3D19Q5HYK7 790 aa5.04□□□□□ -1.6
VPS13D-208ENST00000481484 GADL1Q6ZQY3 521 aa5.04□□□□□ -1.6
VPS13D-208ENST00000481484 METTL16Q86W50 562 aaKnown RBP5.04□□□□□ -1.6
VPS13D-208ENST00000481484 TRMT44Q8IYL2 757 aaKnown RBP5.04□□□□□ -1.6
VPS13D-208ENST00000481484 CRIPAKQ8N1N5 446 aa5.04□□□□□ -1.6
VPS13D-208ENST00000481484 CRACR2BQ8N4Y2 399 aaPredicted RBP5.04□□□□□ -1.6
VPS13D-208ENST00000481484 ZNF280CQ8ND82 737 aa5.04□□□□□ -1.6
VPS13D-208ENST00000481484 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.04□□□□□ -1.6
VPS13D-208ENST00000481484 CLUAP1Q96AJ1 413 aa5.04□□□□□ -1.6
VPS13D-208ENST00000481484 COA7Q96BR5 231 aa5.04□□□□□ -1.6
VPS13D-208ENST00000481484 WDR18Q9BV38 432 aa5.04□□□□□ -1.6
VPS13D-208ENST00000481484 XPO5Q9HAV4 1204 aaKnown RBP eCLIP5.04□□□□□ -1.6
VPS13D-208ENST00000481484 TMOD4Q9NZQ9 345 aa5.04□□□□□ -1.6
VPS13D-208ENST00000481484 DDX19BQ9UMR2 479 aa5.04□□□□□ -1.6
VPS13D-208ENST00000481484 ZHX2Q9Y6X8 837 aa5.04□□□□□ -1.6
VPS13D-208ENST00000481484 PLXNA1Q9UIW2 1896 aa5.04□□□□□ -1.6
VPS13D-208ENST00000481484 RLFQ13129 1914 aa5.03□□□□□ -1.6
VPS13D-208ENST00000481484 NCOR1O75376 2440 aa5.03□□□□□ -1.6
VPS13D-208ENST00000481484 COL11A1P12107 1806 aaPredicted RBP5.03□□□□□ -1.6
VPS13D-208ENST00000481484 A0A1W2PPC1 479 aa5.03□□□□□ -1.6
VPS13D-208ENST00000481484 TTC24A2A3L6 582 aaPredicted RBP5.03□□□□□ -1.6
VPS13D-208ENST00000481484 TRIM75PA6NK02 468 aa5.03□□□□□ -1.6
VPS13D-208ENST00000481484 C19orf81C9J6K1 198 aa5.03□□□□□ -1.6
VPS13D-208ENST00000481484 SURF6O75683 361 aaKnown RBP5.03□□□□□ -1.6
VPS13D-208ENST00000481484 HMGCRP04035 888 aa5.03□□□□□ -1.6
VPS13D-208ENST00000481484 GJB1P08034 283 aa5.03□□□□□ -1.6
VPS13D-208ENST00000481484 CAP2P40123 477 aa5.03□□□□□ -1.6
VPS13D-208ENST00000481484 GJA8P48165 433 aa5.03□□□□□ -1.6
VPS13D-208ENST00000481484 USP14P54578 494 aa5.03□□□□□ -1.6
VPS13D-208ENST00000481484 PRKCZQ05513 592 aa5.03□□□□□ -1.6
VPS13D-208ENST00000481484 PDE3AQ14432 1141 aa5.03□□□□□ -1.6
VPS13D-208ENST00000481484 QPCTQ16769 361 aa5.03□□□□□ -1.6
VPS13D-208ENST00000481484 DIEXFQ68CQ4 756 aaKnown RBP5.03□□□□□ -1.6
VPS13D-208ENST00000481484 GPAT2Q6NUI2 795 aa5.03□□□□□ -1.6
VPS13D-208ENST00000481484 CEP85Q6P2H3 762 aa5.03□□□□□ -1.6
VPS13D-208ENST00000481484 PI16Q6UXB8 463 aa5.03□□□□□ -1.6
VPS13D-208ENST00000481484 SH3BP5LQ7L8J4 393 aa5.03□□□□□ -1.6
VPS13D-208ENST00000481484 ZNF384Q8TF68 577 aa5.03□□□□□ -1.6
VPS13D-208ENST00000481484 KIF1BPQ96EK5 621 aa5.03□□□□□ -1.6
VPS13D-208ENST00000481484 DBNDD2Q9BQY9 259 aa5.03□□□□□ -1.6
VPS13D-208ENST00000481484 ARHGAP39Q9C0H5 1083 aa5.03□□□□□ -1.6
VPS13D-208ENST00000481484 UNC93B1Q9H1C4 597 aa5.03□□□□□ -1.6
VPS13D-208ENST00000481484 KDM4CQ9H3R0 1056 aa5.03□□□□□ -1.6
VPS13D-208ENST00000481484 AAASQ9NRG9 546 aa5.03□□□□□ -1.6
VPS13D-208ENST00000481484 AATFQ9NY61 560 aaKnown RBP eCLIP5.03□□□□□ -1.6
VPS13D-208ENST00000481484 MORF4L1Q9UBU8 362 aa5.03□□□□□ -1.6
VPS13D-208ENST00000481484 CPA4Q9UI42 421 aa5.03□□□□□ -1.6
VPS13D-208ENST00000481484 SERPINB13Q9UIV8 391 aa5.03□□□□□ -1.6
VPS13D-208ENST00000481484 DBNLQ9UJU6 430 aaKnown RBP5.03□□□□□ -1.6
VPS13D-208ENST00000481484 ZBTB21Q9ULJ3 1066 aa5.03□□□□□ -1.6
VPS13D-208ENST00000481484 LAMA2P24043 3122 aaKnown RBP5.03□□□□□ -1.6
VPS13D-208ENST00000481484 USP17L10C9JJH3 530 aa5.02□□□□□ -1.61
VPS13D-208ENST00000481484 SIAH2O43255 324 aa5.02□□□□□ -1.61
VPS13D-208ENST00000481484 RAB11FIP3O75154 756 aa5.02□□□□□ -1.61
VPS13D-208ENST00000481484 IDH1O75874 414 aaKnown RBP5.02□□□□□ -1.61
VPS13D-208ENST00000481484 GLRX3O76003 335 aaKnown RBP5.02□□□□□ -1.61
VPS13D-208ENST00000481484 FARP2O94887 1054 aaPredicted RBP5.02□□□□□ -1.61
VPS13D-208ENST00000481484 INHAP05111 366 aa5.02□□□□□ -1.61
VPS13D-208ENST00000481484 CYP2E1P05181 493 aaPredicted RBP5.02□□□□□ -1.61
VPS13D-208ENST00000481484 CYP2C8P10632 490 aa5.02□□□□□ -1.61
VPS13D-208ENST00000481484 XRCC5P13010 732 aaKnown RBP5.02□□□□□ -1.61
VPS13D-208ENST00000481484 SMPD1P17405 629 aa5.02□□□□□ -1.61
VPS13D-208ENST00000481484 MAPK4P31152 587 aa5.02□□□□□ -1.61
VPS13D-208ENST00000481484 HOXA7P31268 230 aaPredicted RBP5.02□□□□□ -1.61
VPS13D-208ENST00000481484 SMCPP49901 116 aaPredicted RBP5.02□□□□□ -1.61
VPS13D-208ENST00000481484 HMGCS2P54868 508 aa5.02□□□□□ -1.61
VPS13D-208ENST00000481484 BACE1P56817 501 aa5.02□□□□□ -1.61
VPS13D-208ENST00000481484 SH3BP2P78314 561 aa5.02□□□□□ -1.61
VPS13D-208ENST00000481484 CCNA1P78396 465 aa5.02□□□□□ -1.61
VPS13D-208ENST00000481484 TTC6Q86TZ1 520 aa5.02□□□□□ -1.61
VPS13D-208ENST00000481484 FOXP4Q8IVH2 680 aaPredicted RBP5.02□□□□□ -1.61
VPS13D-208ENST00000481484 RPAP2Q8IXW5 612 aaPredicted RBP5.02□□□□□ -1.61
VPS13D-208ENST00000481484 AMOTL1Q8IY63 956 aa5.02□□□□□ -1.61
VPS13D-208ENST00000481484 CLASRPQ8N2M8 674 aaKnown RBP5.02□□□□□ -1.61
VPS13D-208ENST00000481484 SH3RF3Q8TEJ3 882 aaPredicted RBP5.02□□□□□ -1.61
VPS13D-208ENST00000481484 SH3TC2Q8TF17 1288 aa5.02□□□□□ -1.61
VPS13D-208ENST00000481484 SHISA4Q96DD7 197 aa5.02□□□□□ -1.61
VPS13D-208ENST00000481484 C12orf42Q96LP6 360 aa5.02□□□□□ -1.61
VPS13D-208ENST00000481484 FEZ1Q99689 392 aa5.02□□□□□ -1.61
VPS13D-208ENST00000481484 APBA2Q99767 749 aa5.02□□□□□ -1.61
VPS13D-208ENST00000481484 CRNKL1Q9BZJ0 848 aaKnown RBP5.02□□□□□ -1.61
VPS13D-208ENST00000481484 FAM117AQ9C073 453 aa5.02□□□□□ -1.61
VPS13D-208ENST00000481484 DDX24Q9GZR7 859 aaKnown RBP eCLIP5.02□□□□□ -1.61
VPS13D-208ENST00000481484 SH2D4AQ9H788 454 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms