RNA–Protein interactions for RNA: ENST00000478896.2

VCL-205, Transcript of vinculin, humanhuman

TSL 5

Gene VCL, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-205ENST00000478896 ATP11BQ9Y2G3 1177 aa15.91■□□□□ 0.14
VCL-205ENST00000478896 ZNFX1Q9P2E3 1918 aaKnown RBP15.91■□□□□ 0.14
VCL-205ENST00000478896 PLXNA1Q9UIW2 1896 aa15.91■□□□□ 0.14
VCL-205ENST00000478896 SMARCA5O60264 1052 aaPredicted RBP15.9■□□□□ 0.14
VCL-205ENST00000478896 SLC25A27O95847 323 aa15.9■□□□□ 0.14
VCL-205ENST00000478896 RTP1P59025 263 aa15.9■□□□□ 0.14
VCL-205ENST00000478896 SIAH1Q8IUQ4 282 aa15.9■□□□□ 0.14
VCL-205ENST00000478896 ABRAQ8N0Z2 381 aa15.9■□□□□ 0.14
VCL-205ENST00000478896 MMP19Q99542 508 aa15.9■□□□□ 0.14
VCL-205ENST00000478896 PUS7LQ9H0K6 701 aaKnown RBP15.9■□□□□ 0.14
VCL-205ENST00000478896 LAMA3Q16787 3333 aa15.89■□□□□ 0.13
VCL-205ENST00000478896 LTBP2Q14767 1821 aa15.89■□□□□ 0.13
VCL-205ENST00000478896 TMEM132BQ14DG7 1078 aa15.89■□□□□ 0.13
VCL-205ENST00000478896 PRAMEF19Q5SWL8 479 aa15.89■□□□□ 0.13
VCL-205ENST00000478896 CTR9Q6PD62 1173 aa15.89■□□□□ 0.13
VCL-205ENST00000478896 STK11IPQ8N1F8 1099 aa15.89■□□□□ 0.13
VCL-205ENST00000478896 GPATCH3Q96I76 525 aa15.89■□□□□ 0.13
VCL-205ENST00000478896 MAML3Q96JK9 1138 aa15.89■□□□□ 0.13
VCL-205ENST00000478896 PRDM5Q9NQX1 630 aaPredicted RBP15.89■□□□□ 0.13
VCL-205ENST00000478896 IGHA2P01877 340 aa15.88■□□□□ 0.13
VCL-205ENST00000478896 KCTD2Q14681 263 aa15.88■□□□□ 0.13
VCL-205ENST00000478896 FAM47AQ5JRC9 791 aa15.88■□□□□ 0.13
VCL-205ENST00000478896 FAM83BQ5T0W9 1011 aa15.88■□□□□ 0.13
VCL-205ENST00000478896 ECHDC1Q9NTX5 307 aa15.88■□□□□ 0.13
VCL-205ENST00000478896 FBXO28Q9NVF7 368 aa15.88■□□□□ 0.13
VCL-205ENST00000478896 GREB1LQ9C091 1923 aaPredicted RBP15.88■□□□□ 0.13
VCL-205ENST00000478896 C20orf194Q5TEA3 1177 aa15.87■□□□□ 0.13
VCL-205ENST00000478896 SLC39A5Q6ZMH5 540 aa15.87■□□□□ 0.13
VCL-205ENST00000478896 RIOX2Q8IUF8 465 aa15.87■□□□□ 0.13
VCL-205ENST00000478896 MKNK2Q9HBH9 465 aa15.87■□□□□ 0.13
VCL-205ENST00000478896 PPP1R9AQ9ULJ8 1098 aa15.87■□□□□ 0.13
VCL-205ENST00000478896 MYH4Q9Y623 1939 aa15.87■□□□□ 0.13
VCL-205ENST00000478896 MINDY4BA8MYZ0 360 aa15.86■□□□□ 0.13
VCL-205ENST00000478896 VWA5AO00534 786 aa15.86■□□□□ 0.13
VCL-205ENST00000478896 PGK2P07205 417 aa15.86■□□□□ 0.13
VCL-205ENST00000478896 RARBP10826 455 aa15.86■□□□□ 0.13
VCL-205ENST00000478896 COPB2P35606 906 aa15.86■□□□□ 0.13
VCL-205ENST00000478896 STAT3P40763 770 aa15.86■□□□□ 0.13
VCL-205ENST00000478896 TRIM60Q495X7 471 aa15.86■□□□□ 0.13
VCL-205ENST00000478896 FERMT2Q96AC1 680 aa15.86■□□□□ 0.13
VCL-205ENST00000478896 DLL1O00548 723 aa15.85■□□□□ 0.13
VCL-205ENST00000478896 TDO2P48775 406 aa15.85■□□□□ 0.13
VCL-205ENST00000478896 LRRC41Q15345 812 aa15.85■□□□□ 0.13
VCL-205ENST00000478896 KBTBD3Q8NAB2 608 aa15.85■□□□□ 0.13
VCL-205ENST00000478896 APPBP2Q92624 585 aa15.85■□□□□ 0.13
VCL-205ENST00000478896 STRBPQ96SI9 672 aaKnown RBP15.85■□□□□ 0.13
VCL-205ENST00000478896 SLF1Q9BQI6 1058 aa15.85■□□□□ 0.13
VCL-205ENST00000478896 XPNPEP3Q9NQH7 507 aa15.85■□□□□ 0.13
VCL-205ENST00000478896 MTMR10Q9NXD2 777 aa15.85■□□□□ 0.13
VCL-205ENST00000478896 ZNF214Q9UL59 606 aaPredicted RBP15.85■□□□□ 0.13
VCL-205ENST00000478896 ADAMTS5Q9UNA0 930 aa15.85■□□□□ 0.13
VCL-205ENST00000478896 STXBP5LQ9Y2K9 1186 aa15.85■□□□□ 0.13
VCL-205ENST00000478896 CTDP1Q9Y5B0 961 aaPredicted RBP15.85■□□□□ 0.13
VCL-205ENST00000478896 SMCHD1A6NHR9 2005 aa15.84■□□□□ 0.13
VCL-205ENST00000478896 RASA1P20936 1047 aa15.84■□□□□ 0.13
VCL-205ENST00000478896 ADCYAP1R1P41586 468 aa15.84■□□□□ 0.13
VCL-205ENST00000478896 SLC4A3P48751 1232 aa15.84■□□□□ 0.13
VCL-205ENST00000478896 SBK1Q52WX2 424 aa15.84■□□□□ 0.13
VCL-205ENST00000478896 TSHZ3Q63HK5 1081 aa15.84■□□□□ 0.13
VCL-205ENST00000478896 RNF180Q86T96 592 aa15.84■□□□□ 0.13
VCL-205ENST00000478896 NUP88Q99567 741 aaPredicted RBP15.84■□□□□ 0.13
VCL-205ENST00000478896 TINF2Q9BSI4 451 aa15.84■□□□□ 0.13
VCL-205ENST00000478896 NRBP1Q9UHY1 535 aa15.84■□□□□ 0.13
VCL-205ENST00000478896 CNPY2Q9Y2B0 182 aa15.84■□□□□ 0.13
VCL-205ENST00000478896 ROBO3Q96MS0 1386 aa15.84■□□□□ 0.13
VCL-205ENST00000478896 GSG1L2A8MUP6 293 aa15.83■□□□□ 0.12
VCL-205ENST00000478896 GPAA1O43292 621 aa15.83■□□□□ 0.12
VCL-205ENST00000478896 APPP05067 770 aa15.83■□□□□ 0.12
VCL-205ENST00000478896 AKR1A1P14550 325 aa15.83■□□□□ 0.12
VCL-205ENST00000478896 SNX17Q15036 470 aa15.83■□□□□ 0.12
VCL-205ENST00000478896 SNRNP48Q6IEG0 339 aaKnown RBP15.83■□□□□ 0.12
VCL-205ENST00000478896 GIMAP6Q6P9H5 292 aa15.83■□□□□ 0.12
VCL-205ENST00000478896 OSBP2Q969R2 916 aa15.83■□□□□ 0.12
VCL-205ENST00000478896 TEX13BQ9BXU2 312 aa15.83■□□□□ 0.12
VCL-205ENST00000478896 ZNF287Q9HBT7 754 aa15.83■□□□□ 0.12
VCL-205ENST00000478896 NYAP2Q9P242 653 aa15.83■□□□□ 0.12
VCL-205ENST00000478896 DIS3Q9Y2L1 958 aaKnown RBP15.83■□□□□ 0.12
VCL-205ENST00000478896 F5H6K3 240 aa15.82■□□□□ 0.12
VCL-205ENST00000478896 RNF113AO15541 343 aaKnown RBP15.82■□□□□ 0.12
VCL-205ENST00000478896 NDUFB10O96000 172 aa15.82■□□□□ 0.12
VCL-205ENST00000478896 PGK1P00558 417 aa15.82■□□□□ 0.12
VCL-205ENST00000478896 ZFYP08048 801 aaPredicted RBP15.82■□□□□ 0.12
VCL-205ENST00000478896 GNAT2P19087 354 aa15.82■□□□□ 0.12
VCL-205ENST00000478896 KLRC3Q07444 240 aa15.82■□□□□ 0.12
VCL-205ENST00000478896 LRRFIP1Q32MZ4 808 aaKnown RBP15.82■□□□□ 0.12
VCL-205ENST00000478896 ZNF792Q3KQV3 632 aa15.82■□□□□ 0.12
VCL-205ENST00000478896 ZNF697Q5TEC3 545 aa15.82■□□□□ 0.12
VCL-205ENST00000478896 ZNF444Q8N0Y2 327 aaPredicted RBP15.82■□□□□ 0.12
VCL-205ENST00000478896 CPXCR1Q8N123 301 aa15.82■□□□□ 0.12
VCL-205ENST00000478896 REPS2Q8NFH8 660 aa15.82■□□□□ 0.12
VCL-205ENST00000478896 DDX11Q96FC9 970 aa15.82■□□□□ 0.12
VCL-205ENST00000478896 FAM161BQ96MY7 647 aa15.82■□□□□ 0.12
VCL-205ENST00000478896 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.82■□□□□ 0.12
VCL-205ENST00000478896 PDLIM7Q9NR12 457 aa15.82■□□□□ 0.12
VCL-205ENST00000478896 M0R2C6 588 aa15.81■□□□□ 0.12
VCL-205ENST00000478896 PRDM1O75626 825 aa15.81■□□□□ 0.12
VCL-205ENST00000478896 BADQ92934 168 aa15.81■□□□□ 0.12
VCL-205ENST00000478896 KIFC2Q96AC6 838 aa15.81■□□□□ 0.12
VCL-205ENST00000478896 LENG1Q96BZ8 264 aaPredicted RBP15.81■□□□□ 0.12
VCL-205ENST00000478896 DCTPP1Q9H773 170 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms