RNA–Protein interactions for RNA: ENST00000478531.5

BRCA1-215, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,972 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-215ENST00000478531 FBXO28Q9NVF7 368 aa8.12□□□□□ -1.11
BRCA1-215ENST00000478531 MYH6P13533 1939 aa8.12□□□□□ -1.11
BRCA1-215ENST00000478531 TNKSO95271 1327 aa8.12□□□□□ -1.11
BRCA1-215ENST00000478531 SLC27A2O14975 620 aa8.11□□□□□ -1.11
BRCA1-215ENST00000478531 FMNL1O95466 1100 aaPredicted RBP8.11□□□□□ -1.11
BRCA1-215ENST00000478531 PSMC4P43686 418 aa8.11□□□□□ -1.11
BRCA1-215ENST00000478531 IKQ13123 557 aaPredicted RBP8.11□□□□□ -1.11
BRCA1-215ENST00000478531 CCDC96Q2M329 555 aa8.11□□□□□ -1.11
BRCA1-215ENST00000478531 CREB3L3Q68CJ9 461 aa8.11□□□□□ -1.11
BRCA1-215ENST00000478531 SLFN13Q68D06 897 aa8.11□□□□□ -1.11
BRCA1-215ENST00000478531 CYB5R4Q7L1T6 521 aa8.11□□□□□ -1.11
BRCA1-215ENST00000478531 CHST3Q7LGC8 479 aa8.11□□□□□ -1.11
BRCA1-215ENST00000478531 OTOP1Q7RTM1 612 aa8.11□□□□□ -1.11
BRCA1-215ENST00000478531 GMCL1P1Q8NEA9 526 aa8.11□□□□□ -1.11
BRCA1-215ENST00000478531 MKL1Q969V6 931 aa8.11□□□□□ -1.11
BRCA1-215ENST00000478531 TMEM47Q9BQJ4 181 aa8.11□□□□□ -1.11
BRCA1-215ENST00000478531 EFCC1Q9HA90 598 aa8.11□□□□□ -1.11
BRCA1-215ENST00000478531 ZSWIM5Q9P217 1185 aa8.11□□□□□ -1.11
BRCA1-215ENST00000478531 REC8O95072 547 aa8.11□□□□□ -1.11
BRCA1-215ENST00000478531 TOP1P11387 765 aaKnown RBP8.11□□□□□ -1.11
BRCA1-215ENST00000478531 MCCP23508 829 aa8.11□□□□□ -1.11
BRCA1-215ENST00000478531 CTGFP29279 349 aa8.11□□□□□ -1.11
BRCA1-215ENST00000478531 SLC1A4P43007 532 aa8.11□□□□□ -1.11
BRCA1-215ENST00000478531 FCGRTP55899 365 aa8.11□□□□□ -1.11
BRCA1-215ENST00000478531 ERVK-9P63128 1117 aa8.11□□□□□ -1.11
BRCA1-215ENST00000478531 ERVK-24P63145 666 aa8.11□□□□□ -1.11
BRCA1-215ENST00000478531 PLS1Q14651 629 aa8.11□□□□□ -1.11
BRCA1-215ENST00000478531 COG2Q14746 738 aa8.11□□□□□ -1.11
BRCA1-215ENST00000478531 WDR78Q5VTH9 848 aa8.11□□□□□ -1.11
BRCA1-215ENST00000478531 RNF20Q5VTR2 975 aa8.11□□□□□ -1.11
BRCA1-215ENST00000478531 KCTD1Q719H9 257 aa8.11□□□□□ -1.11
BRCA1-215ENST00000478531 CCAR1Q8IX12 1150 aaKnown RBP8.11□□□□□ -1.11
BRCA1-215ENST00000478531 ENAHQ8N8S7 591 aaPredicted RBP8.11□□□□□ -1.11
BRCA1-215ENST00000478531 GPRC5AQ8NFJ5 357 aa8.11□□□□□ -1.11
BRCA1-215ENST00000478531 NCOA7Q8NI08 942 aa8.11□□□□□ -1.11
BRCA1-215ENST00000478531 GTF3C2Q8WUA4 911 aaPredicted RBP8.11□□□□□ -1.11
BRCA1-215ENST00000478531 ATG4CQ96DT6 458 aa8.11□□□□□ -1.11
BRCA1-215ENST00000478531 TRIM47Q96LD4 638 aa8.11□□□□□ -1.11
BRCA1-215ENST00000478531 ZSCAN10Q96SZ4 725 aaPredicted RBP8.11□□□□□ -1.11
BRCA1-215ENST00000478531 MCOLN1Q9GZU1 580 aa8.11□□□□□ -1.11
BRCA1-215ENST00000478531 CWC22Q9HCG8 908 aaKnown RBP8.11□□□□□ -1.11
BRCA1-215ENST00000478531 TCP11L1Q9NUJ3 509 aa8.11□□□□□ -1.11
BRCA1-215ENST00000478531 MKI67P46013 3256 aaKnown RBP8.11□□□□□ -1.11
BRCA1-215ENST00000478531 TMEM232C9JQI7 657 aa8.1□□□□□ -1.11
BRCA1-215ENST00000478531 TNPO2O14787 897 aaKnown RBP8.1□□□□□ -1.11
BRCA1-215ENST00000478531 BMP3P12645 472 aa8.1□□□□□ -1.11
BRCA1-215ENST00000478531 NECTIN1Q15223 517 aa8.1□□□□□ -1.11
BRCA1-215ENST00000478531 RCSD1Q6JBY9 416 aa8.1□□□□□ -1.11
BRCA1-215ENST00000478531 POTEEQ6S8J3 1075 aa8.1□□□□□ -1.11
BRCA1-215ENST00000478531 KIFC2Q96AC6 838 aa8.1□□□□□ -1.11
BRCA1-215ENST00000478531 SLF1Q9BQI6 1058 aa8.1□□□□□ -1.11
BRCA1-215ENST00000478531 KAT14Q9H8E8 782 aa8.1□□□□□ -1.11
BRCA1-215ENST00000478531 HOXC10Q9NYD6 342 aa8.1□□□□□ -1.11
BRCA1-215ENST00000478531 BTBD7Q9P203 1132 aa8.1□□□□□ -1.11
BRCA1-215ENST00000478531 RBPJLQ9UBG7 517 aa8.1□□□□□ -1.11
BRCA1-215ENST00000478531 SYNPO2Q9UMS6 1093 aa8.1□□□□□ -1.11
BRCA1-215ENST00000478531 GTF3C3Q9Y5Q9 886 aa8.1□□□□□ -1.11
BRCA1-215ENST00000478531 FRMPD2Q68DX3 1309 aaPredicted RBP8.1□□□□□ -1.11
BRCA1-215ENST00000478531 ERICH2A1L162 156 aa8.1□□□□□ -1.11
BRCA1-215ENST00000478531 CNMDO75829 334 aa8.1□□□□□ -1.11
BRCA1-215ENST00000478531 DSG3P32926 999 aa8.1□□□□□ -1.11
BRCA1-215ENST00000478531 STAT2P52630 851 aa8.1□□□□□ -1.11
BRCA1-215ENST00000478531 SART3Q15020 963 aaKnown RBP8.1□□□□□ -1.11
BRCA1-215ENST00000478531 ARHGEF6Q15052 776 aa8.1□□□□□ -1.11
BRCA1-215ENST00000478531 Q3C1V9 767 aa8.1□□□□□ -1.11
BRCA1-215ENST00000478531 CCDC178Q5BJE1 867 aa8.1□□□□□ -1.11
BRCA1-215ENST00000478531 IFIT1BQ5T764 474 aaKnown RBP8.1□□□□□ -1.11
BRCA1-215ENST00000478531 PNMA1Q8ND90 353 aa8.1□□□□□ -1.11
BRCA1-215ENST00000478531 GMCL1Q96IK5 515 aa8.1□□□□□ -1.11
BRCA1-215ENST00000478531 PORCNQ9H237 461 aa8.1□□□□□ -1.11
BRCA1-215ENST00000478531 MORF4L1Q9UBU8 362 aa8.1□□□□□ -1.11
BRCA1-215ENST00000478531 PPP1R9AQ9ULJ8 1098 aa8.1□□□□□ -1.11
BRCA1-215ENST00000478531 RABGAP1Q9Y3P9 1069 aa8.1□□□□□ -1.11
BRCA1-215ENST00000478531 CTDP1Q9Y5B0 961 aaPredicted RBP8.1□□□□□ -1.11
BRCA1-215ENST00000478531 BAZ2BQ9UIF8 2168 aaKnown RBP8.09□□□□□ -1.11
BRCA1-215ENST00000478531 MYPNQ86TC9 1320 aa8.09□□□□□ -1.11
BRCA1-215ENST00000478531 ZNFX1Q9P2E3 1918 aaKnown RBP8.09□□□□□ -1.11
BRCA1-215ENST00000478531 SMCHD1A6NHR9 2005 aa8.09□□□□□ -1.11
BRCA1-215ENST00000478531 IFIT3O14879 490 aaKnown RBP8.09□□□□□ -1.11
BRCA1-215ENST00000478531 ZKSCAN1P17029 563 aaPredicted RBP8.09□□□□□ -1.11
BRCA1-215ENST00000478531 NOVP48745 357 aa8.09□□□□□ -1.11
BRCA1-215ENST00000478531 SLC4A3P48751 1232 aa8.09□□□□□ -1.11
BRCA1-215ENST00000478531 NT5C2P49902 561 aa8.09□□□□□ -1.11
BRCA1-215ENST00000478531 CCNA1P78396 465 aa8.09□□□□□ -1.11
BRCA1-215ENST00000478531 PRKCZQ05513 592 aa8.09□□□□□ -1.11
BRCA1-215ENST00000478531 COL9A3Q14050 684 aaPredicted RBP8.09□□□□□ -1.11
BRCA1-215ENST00000478531 LBX2Q6XYB7 198 aa8.09□□□□□ -1.11
BRCA1-215ENST00000478531 DGKHQ86XP1 1220 aa8.09□□□□□ -1.11
BRCA1-215ENST00000478531 MB21D2Q8IYB1 491 aaPredicted RBP8.09□□□□□ -1.11
BRCA1-215ENST00000478531 RASEFQ8IZ41 740 aa8.09□□□□□ -1.11
BRCA1-215ENST00000478531 DCAF4Q8WV16 495 aa8.09□□□□□ -1.11
BRCA1-215ENST00000478531 TTC14Q96N46 770 aa8.09□□□□□ -1.11
BRCA1-215ENST00000478531 GPCPD1Q9NPB8 672 aa8.09□□□□□ -1.11
BRCA1-215ENST00000478531 FEM1BQ9UK73 627 aa8.09□□□□□ -1.11
BRCA1-215ENST00000478531 PLXNA1Q9UIW2 1896 aa8.09□□□□□ -1.11
BRCA1-215ENST00000478531 DNAH12Q6ZR08 3092 aa8.08□□□□□ -1.12
BRCA1-215ENST00000478531 KIAA0100Q14667 2235 aaKnown RBP8.08□□□□□ -1.12
BRCA1-215ENST00000478531 VWA5AO00534 786 aa8.08□□□□□ -1.12
BRCA1-215ENST00000478531 PRC1O43663 620 aa8.08□□□□□ -1.12
BRCA1-215ENST00000478531 GOLGA8HP0CJ92 632 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 153.5 ms