RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-223ENST00000476519 SLC5A4Q9NY91 659 aa14.35□□□□□ -0.11
SYNE1-223ENST00000476519 MTMR4Q9NYA4 1195 aa14.35□□□□□ -0.11
SYNE1-223ENST00000476519 CLIP2Q9UDT6 1046 aa14.35□□□□□ -0.11
SYNE1-223ENST00000476519 OGDHLQ9ULD0 1010 aa14.35□□□□□ -0.11
SYNE1-223ENST00000476519 PPP1R9AQ9ULJ8 1098 aa14.35□□□□□ -0.11
SYNE1-223ENST00000476519 NR2E3Q9Y5X4 410 aa14.35□□□□□ -0.11
SYNE1-223ENST00000476519 VWA5AO00534 786 aa14.34□□□□□ -0.11
SYNE1-223ENST00000476519 PRDM1O75626 825 aa14.34□□□□□ -0.11
SYNE1-223ENST00000476519 TTLL1O95922 423 aa14.34□□□□□ -0.11
SYNE1-223ENST00000476519 TSPY3P0CV98 308 aa14.34□□□□□ -0.11
SYNE1-223ENST00000476519 TSPY8P0CW00 308 aa14.34□□□□□ -0.11
SYNE1-223ENST00000476519 PLS1Q14651 629 aa14.34□□□□□ -0.11
SYNE1-223ENST00000476519 TMEM132BQ14DG7 1078 aa14.34□□□□□ -0.11
SYNE1-223ENST00000476519 B4GALNT3Q6L9W6 998 aa14.34□□□□□ -0.11
SYNE1-223ENST00000476519 NCAPG2Q86XI2 1143 aa14.34□□□□□ -0.11
SYNE1-223ENST00000476519 CEP95Q96GE4 821 aa14.34□□□□□ -0.11
SYNE1-223ENST00000476519 PAWRQ96IZ0 340 aaKnown RBP14.34□□□□□ -0.11
SYNE1-223ENST00000476519 OSBPL3Q9H4L5 887 aa14.34□□□□□ -0.11
SYNE1-223ENST00000476519 SUPT16HQ9Y5B9 1047 aaKnown RBP14.34□□□□□ -0.11
SYNE1-223ENST00000476519 H0YGN5 161 aa14.33□□□□□ -0.12
SYNE1-223ENST00000476519 RAD21O60216 631 aa14.33□□□□□ -0.12
SYNE1-223ENST00000476519 NDUFB10O96000 172 aa14.33□□□□□ -0.12
SYNE1-223ENST00000476519 IGHA2P01877 340 aa14.33□□□□□ -0.12
SYNE1-223ENST00000476519 FCER1AP12319 257 aa14.33□□□□□ -0.12
SYNE1-223ENST00000476519 ADORA2AP29274 412 aa14.33□□□□□ -0.12
SYNE1-223ENST00000476519 COPB2P35606 906 aa14.33□□□□□ -0.12
SYNE1-223ENST00000476519 STAT3P40763 770 aa14.33□□□□□ -0.12
SYNE1-223ENST00000476519 TFAP4Q01664 338 aa14.33□□□□□ -0.12
SYNE1-223ENST00000476519 FAM83BQ5T0W9 1011 aa14.33□□□□□ -0.12
SYNE1-223ENST00000476519 OLFML2BQ68BL8 750 aa14.33□□□□□ -0.12
SYNE1-223ENST00000476519 RIOX2Q8IUF8 465 aa14.33□□□□□ -0.12
SYNE1-223ENST00000476519 PRPF38AQ8NAV1 312 aaKnown RBP14.33□□□□□ -0.12
SYNE1-223ENST00000476519 GMCL1P1Q8NEA9 526 aa14.33□□□□□ -0.12
SYNE1-223ENST00000476519 SLF1Q9BQI6 1058 aa14.33□□□□□ -0.12
SYNE1-223ENST00000476519 NBPF3Q9H094 633 aa14.33□□□□□ -0.12
SYNE1-223ENST00000476519 FBXO28Q9NVF7 368 aa14.33□□□□□ -0.12
SYNE1-223ENST00000476519 ANAPC4Q9UJX5 808 aa14.33□□□□□ -0.12
SYNE1-223ENST00000476519 TRIM6-TRIM34B2RNG4 842 aa14.32□□□□□ -0.12
SYNE1-223ENST00000476519 FOXP2O15409 715 aa14.32□□□□□ -0.12
SYNE1-223ENST00000476519 MSCO60682 206 aa14.32□□□□□ -0.12
SYNE1-223ENST00000476519 SLC34A2O95436 690 aa14.32□□□□□ -0.12
SYNE1-223ENST00000476519 FGRP09769 529 aa14.32□□□□□ -0.12
SYNE1-223ENST00000476519 LHX8Q68G74 356 aa14.32□□□□□ -0.12
SYNE1-223ENST00000476519 CCDC129Q6ZRS4 1044 aa14.32□□□□□ -0.12
SYNE1-223ENST00000476519 PLEKHM2Q8IWE5 1019 aa14.32□□□□□ -0.12
SYNE1-223ENST00000476519 NPLOC4Q8TAT6 608 aa14.32□□□□□ -0.12
SYNE1-223ENST00000476519 FLRT1Q9NZU1 646 aa14.32□□□□□ -0.12
SYNE1-223ENST00000476519 EVI5O60447 810 aa14.31□□□□□ -0.12
SYNE1-223ENST00000476519 COBLO75128 1261 aa14.31□□□□□ -0.12
SYNE1-223ENST00000476519 FGAP02671 866 aa14.31□□□□□ -0.12
SYNE1-223ENST00000476519 CCND3P30281 292 aaPredicted RBP14.31□□□□□ -0.12
SYNE1-223ENST00000476519 MNX1P50219 401 aaPredicted RBP14.31□□□□□ -0.12
SYNE1-223ENST00000476519 FAM47AQ5JRC9 791 aa14.31□□□□□ -0.12
SYNE1-223ENST00000476519 VPS53Q5VIR6 699 aa14.31□□□□□ -0.12
SYNE1-223ENST00000476519 SAMD1Q6SPF0 538 aaPredicted RBP14.31□□□□□ -0.12
SYNE1-223ENST00000476519 REPS2Q8NFH8 660 aa14.31□□□□□ -0.12
SYNE1-223ENST00000476519 FAM227BQ96M60 508 aa14.31□□□□□ -0.12
SYNE1-223ENST00000476519 NUP88Q99567 741 aaPredicted RBP14.31□□□□□ -0.12
SYNE1-223ENST00000476519 FEM1BQ9UK73 627 aa14.31□□□□□ -0.12
SYNE1-223ENST00000476519 ZNF214Q9UL59 606 aaPredicted RBP14.31□□□□□ -0.12
SYNE1-223ENST00000476519 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.31□□□□□ -0.12
SYNE1-223ENST00000476519 PLIN4Q96Q06 1357 aa14.31□□□□□ -0.12
SYNE1-223ENST00000476519 BAZ2AQ9UIF9 1905 aaKnown RBP14.31□□□□□ -0.12
SYNE1-223ENST00000476519 ATP2A1O14983 1001 aa14.3□□□□□ -0.12
SYNE1-223ENST00000476519 ZBED4O75132 1171 aa14.3□□□□□ -0.12
SYNE1-223ENST00000476519 FDX1P10109 184 aa14.3□□□□□ -0.12
SYNE1-223ENST00000476519 CYP2C19P33261 490 aa14.3□□□□□ -0.12
SYNE1-223ENST00000476519 MFAP1P55081 439 aaKnown RBP14.3□□□□□ -0.12
SYNE1-223ENST00000476519 HABP4Q5JVS0 413 aaKnown RBP14.3□□□□□ -0.12
SYNE1-223ENST00000476519 SLFN13Q68D06 897 aa14.3□□□□□ -0.12
SYNE1-223ENST00000476519 RILPL2Q969X0 211 aa14.3□□□□□ -0.12
SYNE1-223ENST00000476519 TEX13BQ9BXU2 312 aa14.3□□□□□ -0.12
SYNE1-223ENST00000476519 DIS3Q9Y2L1 958 aaKnown RBP14.3□□□□□ -0.12
SYNE1-223ENST00000476519 MYH7P12883 1935 aa14.3□□□□□ -0.12
SYNE1-223ENST00000476519 RANBP2P49792 3224 aaKnown RBP14.3□□□□□ -0.12
SYNE1-223ENST00000476519 A0A0D9SFI3 127 aa14.29□□□□□ -0.12
SYNE1-223ENST00000476519 TSPY2A6NKD2 308 aa14.29□□□□□ -0.12
SYNE1-223ENST00000476519 ORC4O43929 436 aa14.29□□□□□ -0.12
SYNE1-223ENST00000476519 HSPD1P10809 573 aaKnown RBP14.29□□□□□ -0.12
SYNE1-223ENST00000476519 PCP11498 1178 aaKnown RBP14.29□□□□□ -0.12
SYNE1-223ENST00000476519 BMP3P12645 472 aa14.29□□□□□ -0.12
SYNE1-223ENST00000476519 SDSP20132 328 aa14.29□□□□□ -0.12
SYNE1-223ENST00000476519 CTDSPL2Q05D32 466 aa14.29□□□□□ -0.12
SYNE1-223ENST00000476519 NMIQ13287 307 aaPredicted RBP14.29□□□□□ -0.12
SYNE1-223ENST00000476519 KCTD2Q14681 263 aa14.29□□□□□ -0.12
SYNE1-223ENST00000476519 DIS3LQ8TF46 1054 aaKnown RBP14.29□□□□□ -0.12
SYNE1-223ENST00000476519 MMP19Q99542 508 aa14.29□□□□□ -0.12
SYNE1-223ENST00000476519 C11orf49Q9H6J7 331 aa14.29□□□□□ -0.12
SYNE1-223ENST00000476519 DDX20Q9UHI6 824 aaKnown RBP14.29□□□□□ -0.12
SYNE1-223ENST00000476519 NRBP1Q9UHY1 535 aa14.29□□□□□ -0.12
SYNE1-223ENST00000476519 CTDP1Q9Y5B0 961 aaPredicted RBP14.29□□□□□ -0.12
SYNE1-223ENST00000476519 HIP1O00291 1037 aa14.28□□□□□ -0.12
SYNE1-223ENST00000476519 RANBP6O60518 1105 aaKnown RBP14.28□□□□□ -0.12
SYNE1-223ENST00000476519 PLA2G6O60733 806 aa14.28□□□□□ -0.12
SYNE1-223ENST00000476519 ZMYM6O95789 1325 aa14.28□□□□□ -0.12
SYNE1-223ENST00000476519 COL6A1P12109 1028 aa14.28□□□□□ -0.12
SYNE1-223ENST00000476519 CNGA1P29973 690 aa14.28□□□□□ -0.12
SYNE1-223ENST00000476519 NOVP48745 357 aa14.28□□□□□ -0.12
SYNE1-223ENST00000476519 OAZ1P54368 228 aa14.28□□□□□ -0.12
SYNE1-223ENST00000476519 LRRC47Q8N1G4 583 aaKnown RBP14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms