RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-208ENST00000474426 CFDP1Q9UEE9 299 aaPredicted RBP3.93□□□□□ -1.78
UBR3-208ENST00000474426 CDV3Q9UKY7 258 aaKnown RBP3.93□□□□□ -1.78
UBR3-208ENST00000474426 KIAA1257Q9ULG3 409 aa3.93□□□□□ -1.78
UBR3-208ENST00000474426 ZNF510Q9Y2H8 683 aa3.93□□□□□ -1.78
UBR3-208ENST00000474426 PCDHGB7Q9Y5F8 929 aa3.93□□□□□ -1.78
UBR3-208ENST00000474426 GIMAP1-GIMAP5A0A087WTJ2 511 aa3.93□□□□□ -1.78
UBR3-208ENST00000474426 CYP2D7A0A087X1C5 515 aa3.93□□□□□ -1.78
UBR3-208ENST00000474426 FAM221AA4D161 298 aa3.93□□□□□ -1.78
UBR3-208ENST00000474426 OPA1O60313 960 aa3.93□□□□□ -1.78
UBR3-208ENST00000474426 GFPT2O94808 682 aa3.93□□□□□ -1.78
UBR3-208ENST00000474426 EPN2O95208 641 aa3.93□□□□□ -1.78
UBR3-208ENST00000474426 LARGE1O95461 756 aa3.93□□□□□ -1.78
UBR3-208ENST00000474426 USP8P40818 1118 aa3.93□□□□□ -1.78
UBR3-208ENST00000474426 RAD52P43351 418 aa3.93□□□□□ -1.78
UBR3-208ENST00000474426 EPHB1P54762 984 aa3.93□□□□□ -1.78
UBR3-208ENST00000474426 RELQ04864 619 aaPredicted RBP3.93□□□□□ -1.78
UBR3-208ENST00000474426 MZT2BQ6NZ67 158 aa3.93□□□□□ -1.78
UBR3-208ENST00000474426 SYT10Q6XYQ8 523 aa3.93□□□□□ -1.78
UBR3-208ENST00000474426 EEPD1Q7L9B9 569 aa3.93□□□□□ -1.78
UBR3-208ENST00000474426 NLRP10Q86W26 655 aa3.93□□□□□ -1.78
UBR3-208ENST00000474426 ZNF540Q8NDQ6 660 aa3.93□□□□□ -1.78
UBR3-208ENST00000474426 GIMAP5Q96F15 307 aa3.93□□□□□ -1.78
UBR3-208ENST00000474426 MRPL9Q9BYD2 267 aaKnown RBP3.93□□□□□ -1.78
UBR3-208ENST00000474426 CSRNP2Q9H175 543 aa3.93□□□□□ -1.78
UBR3-208ENST00000474426 EPS15L1Q9UBC2 864 aa3.93□□□□□ -1.78
UBR3-208ENST00000474426 PLEKHG2Q9H7P9 1386 aa3.93□□□□□ -1.78
UBR3-208ENST00000474426 ARPC4-TTLL3A0A0A6YYG9 625 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 TSPY2A6NKD2 308 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 OLFM2O95897 454 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 TSPY3P0CV98 308 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 TSPY8P0CW00 308 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 KRT13P13646 458 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 TSPY1Q01534 308 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 C6orf118Q5T5N4 469 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 ISM2Q6H9L7 571 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 IGF2-ASQ6U949 168 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 DSTYKQ6XUX3 929 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 NUTM1Q86Y26 1132 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 SLC15A3Q8IY34 581 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 CKAP2LQ8IYA6 745 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 C7orf61Q8IZ16 206 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 IL17REQ8NFR9 667 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 NXPE3Q969Y0 559 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 TCF12Q99081 682 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 UQCC2Q9BRT2 126 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 HERC2P3Q9BVR0 1158 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 PANK3Q9H999 370 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 GTF2IRD1Q9UHL9 959 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 CDC45O75419 566 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 HSPA8P11142 646 aaKnown RBP3.92□□□□□ -1.78
UBR3-208ENST00000474426 GCFC2P16383 781 aaKnown RBP3.92□□□□□ -1.78
UBR3-208ENST00000474426 ECE1P42892 770 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 PDE6CP51160 858 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 SCNN1BP51168 640 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 NUBP1P53384 320 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 SMTNP53814 917 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 ARID5AQ03989 594 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 LAMB3Q13751 1172 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 INAQ16352 499 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 ERFEQ4G0M1 354 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 PDE12Q6L8Q7 609 aaKnown RBP3.92□□□□□ -1.78
UBR3-208ENST00000474426 NCCRP1Q6ZVX7 275 aaPredicted RBP3.92□□□□□ -1.78
UBR3-208ENST00000474426 TBC1D21Q8IYX1 336 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 B4GALNT2Q8NHY0 566 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 NPLOC4Q8TAT6 608 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 PXYLP1Q8TE99 480 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 AFAP1L1Q8TED9 768 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 ATP6V1E2Q96A05 226 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 TEX13BQ9BXU2 312 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 RTFDC1Q9BY42 306 aaPredicted RBP3.92□□□□□ -1.78
UBR3-208ENST00000474426 ANKEF1Q9NU02 776 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 GAKO14976 1311 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 ESYT3A0FGR9 886 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 ZBED4O75132 1171 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 MBD4O95243 580 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 SKIP12755 728 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 MUTP22033 750 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 MSNP26038 577 aaKnown RBP3.92□□□□□ -1.78
UBR3-208ENST00000474426 ATP5DP30049 168 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 HOXC12P31275 282 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 RANBP1P43487 201 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 HTR3AP46098 478 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 HAAOP46952 286 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 MNAT1P51948 309 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 ARPC4P59998 168 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 CACNB2Q08289 660 aaPredicted RBP3.92□□□□□ -1.78
UBR3-208ENST00000474426 IMMTQ16891 758 aaKnown RBP3.92□□□□□ -1.78
UBR3-208ENST00000474426 ABRAXAS1Q6UWZ7 409 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 FAM196AQ6ZSG2 479 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 CENPQQ7L2Z9 268 aaPredicted RBP3.92□□□□□ -1.78
UBR3-208ENST00000474426 TMC6Q7Z403 805 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 TRMT2AQ8IZ69 625 aaKnown RBP3.92□□□□□ -1.78
UBR3-208ENST00000474426 AFAP1Q8N556 730 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 IL17RDQ8NFM7 739 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 MAELQ96JY0 434 aaKnown RBP3.92□□□□□ -1.78
UBR3-208ENST00000474426 DDX18Q9NVP1 670 aaKnown RBP3.92□□□□□ -1.78
UBR3-208ENST00000474426 DNAAF2Q9NVR5 837 aaKnown RBP3.92□□□□□ -1.78
UBR3-208ENST00000474426 TUBGCP4Q9UGJ1 667 aa3.92□□□□□ -1.78
UBR3-208ENST00000474426 AGO2Q9UKV8 859 aaKnown RBP3.92□□□□□ -1.78
UBR3-208ENST00000474426 MAFBQ9Y5Q3 323 aaPredicted RBP3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms