RNA–Protein interactions for RNA: ENST00000470942.1

HDAC6-218, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 668 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-218ENST00000470942 MKL1Q969V6 931 aa18.61■□□□□ 0.57
HDAC6-218ENST00000470942 NUP88Q99567 741 aaPredicted RBP18.61■□□□□ 0.57
HDAC6-218ENST00000470942 MOV10L1Q9BXT6 1211 aaKnown RBP18.61■□□□□ 0.57
HDAC6-218ENST00000470942 SPATC1LQ9H0A9 340 aa18.61■□□□□ 0.57
HDAC6-218ENST00000470942 FBXO28Q9NVF7 368 aa18.61■□□□□ 0.57
HDAC6-218ENST00000470942 ZMYM6O95789 1325 aa18.6■□□□□ 0.57
HDAC6-218ENST00000470942 NDUFB10O96000 172 aa18.6■□□□□ 0.57
HDAC6-218ENST00000470942 HMGCRP04035 888 aa18.6■□□□□ 0.57
HDAC6-218ENST00000470942 GSPT1P15170 499 aaKnown RBP18.6■□□□□ 0.57
HDAC6-218ENST00000470942 RRP12Q5JTH9 1297 aaKnown RBP18.6■□□□□ 0.57
HDAC6-218ENST00000470942 LRRC47Q8N1G4 583 aaKnown RBP18.6■□□□□ 0.57
HDAC6-218ENST00000470942 NKX2-3Q8TAU0 364 aa18.6■□□□□ 0.57
HDAC6-218ENST00000470942 TACC3Q9Y6A5 838 aa18.6■□□□□ 0.57
HDAC6-218ENST00000470942 PDE4DIPQ5VU43 2346 aa18.6■□□□□ 0.57
HDAC6-218ENST00000470942 SLC15A5A6NIM6 579 aa18.59■□□□□ 0.57
HDAC6-218ENST00000470942 ORC4O43929 436 aa18.59■□□□□ 0.57
HDAC6-218ENST00000470942 GJB1P08034 283 aa18.59■□□□□ 0.57
HDAC6-218ENST00000470942 PTPREP23469 700 aa18.59■□□□□ 0.57
HDAC6-218ENST00000470942 MAP2K5Q13163 448 aa18.59■□□□□ 0.57
HDAC6-218ENST00000470942 PPP4R3BQ5MIZ7 849 aa18.59■□□□□ 0.57
HDAC6-218ENST00000470942 TRIB2Q92519 343 aa18.59■□□□□ 0.57
HDAC6-218ENST00000470942 USP6NLQ92738 828 aa18.59■□□□□ 0.57
HDAC6-218ENST00000470942 PPP1R9AQ9ULJ8 1098 aa18.59■□□□□ 0.57
HDAC6-218ENST00000470942 STX8Q9UNK0 236 aa18.59■□□□□ 0.57
HDAC6-218ENST00000470942 XRCC5P13010 732 aaKnown RBP18.58■□□□□ 0.56
HDAC6-218ENST00000470942 ZKSCAN1P17029 563 aaPredicted RBP18.58■□□□□ 0.56
HDAC6-218ENST00000470942 ERCC3P19447 782 aa18.58■□□□□ 0.56
HDAC6-218ENST00000470942 TRIM32Q13049 653 aa18.58■□□□□ 0.56
HDAC6-218ENST00000470942 SLFN13Q68D06 897 aa18.58■□□□□ 0.56
HDAC6-218ENST00000470942 NCAPG2Q86XI2 1143 aa18.58■□□□□ 0.56
HDAC6-218ENST00000470942 TRMT44Q8IYL2 757 aaKnown RBP18.58■□□□□ 0.56
HDAC6-218ENST00000470942 SHCBP1Q8NEM2 672 aa18.58■□□□□ 0.56
HDAC6-218ENST00000470942 SLF1Q9BQI6 1058 aa18.58■□□□□ 0.56
HDAC6-218ENST00000470942 ISY1Q9ULR0 285 aaKnown RBP18.58■□□□□ 0.56
HDAC6-218ENST00000470942 SYNPO2Q9UMS6 1093 aa18.58■□□□□ 0.56
HDAC6-218ENST00000470942 ZNFX1Q9P2E3 1918 aaKnown RBP18.57■□□□□ 0.56
HDAC6-218ENST00000470942 NMT2O60551 498 aa18.57■□□□□ 0.56
HDAC6-218ENST00000470942 FGRP09769 529 aa18.57■□□□□ 0.56
HDAC6-218ENST00000470942 GJA8P48165 433 aa18.57■□□□□ 0.56
HDAC6-218ENST00000470942 TMEM132BQ14DG7 1078 aa18.57■□□□□ 0.56
HDAC6-218ENST00000470942 MFSD6Q6ZSS7 791 aa18.57■□□□□ 0.56
HDAC6-218ENST00000470942 GMCL1P1Q8NEA9 526 aa18.57■□□□□ 0.56
HDAC6-218ENST00000470942 U2AF1L4Q8WU68 220 aaKnown RBP18.57■□□□□ 0.56
HDAC6-218ENST00000470942 CHMP4CQ96CF2 233 aa18.57■□□□□ 0.56
HDAC6-218ENST00000470942 DEFB118Q96PH6 123 aa18.57■□□□□ 0.56
HDAC6-218ENST00000470942 APBA2Q99767 749 aa18.57■□□□□ 0.56
HDAC6-218ENST00000470942 IL17RBQ9NRM6 502 aa18.57■□□□□ 0.56
HDAC6-218ENST00000470942 ADAMTS5Q9UNA0 930 aa18.57■□□□□ 0.56
HDAC6-218ENST00000470942 CTDP1Q9Y5B0 961 aaPredicted RBP18.57■□□□□ 0.56
HDAC6-218ENST00000470942 VWA5AO00534 786 aa18.56■□□□□ 0.56
HDAC6-218ENST00000470942 ZNF213O14771 459 aa18.56■□□□□ 0.56
HDAC6-218ENST00000470942 STRNO43815 780 aa18.56■□□□□ 0.56
HDAC6-218ENST00000470942 SGPL1O95470 568 aa18.56■□□□□ 0.56
HDAC6-218ENST00000470942 GRB14Q14449 540 aa18.56■□□□□ 0.56
HDAC6-218ENST00000470942 CCL14Q16627 93 aa18.56■□□□□ 0.56
HDAC6-218ENST00000470942 AKNAD1Q5T1N1 836 aa18.56■□□□□ 0.56
HDAC6-218ENST00000470942 DPP9Q86TI2 863 aa18.56■□□□□ 0.56
HDAC6-218ENST00000470942 PRPF38AQ8NAV1 312 aaKnown RBP18.56■□□□□ 0.56
HDAC6-218ENST00000470942 SHISA4Q96DD7 197 aa18.56■□□□□ 0.56
HDAC6-218ENST00000470942 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.56■□□□□ 0.56
HDAC6-218ENST00000470942 MROH8Q9H579 483 aa18.56■□□□□ 0.56
HDAC6-218ENST00000470942 HMX1Q9NP08 348 aaPredicted RBP18.56■□□□□ 0.56
HDAC6-218ENST00000470942 RPTORQ8N122 1335 aa18.55■□□□□ 0.56
HDAC6-218ENST00000470942 SLC25A27O95847 323 aa18.55■□□□□ 0.56
HDAC6-218ENST00000470942 TFRCP02786 760 aaKnown RBP18.55■□□□□ 0.56
HDAC6-218ENST00000470942 BMP3P12645 472 aa18.55■□□□□ 0.56
HDAC6-218ENST00000470942 STAT3P40763 770 aa18.55■□□□□ 0.56
HDAC6-218ENST00000470942 KIFC2Q96AC6 838 aa18.55■□□□□ 0.56
HDAC6-218ENST00000470942 DSCC1Q9BVC3 393 aa18.55■□□□□ 0.56
HDAC6-218ENST00000470942 RNF41Q9H4P4 317 aaPredicted RBP18.55■□□□□ 0.56
HDAC6-218ENST00000470942 FEM1BQ9UK73 627 aa18.55■□□□□ 0.56
HDAC6-218ENST00000470942 MTMR7Q9Y216 660 aa18.55■□□□□ 0.56
HDAC6-218ENST00000470942 LAMA4Q16363 1823 aa18.55■□□□□ 0.56
HDAC6-218ENST00000470942 BRCA2P51587 3418 aa18.55■□□□□ 0.56
HDAC6-218ENST00000470942 ZBED4O75132 1171 aa18.54■□□□□ 0.56
HDAC6-218ENST00000470942 PCP11498 1178 aaKnown RBP18.54■□□□□ 0.56
HDAC6-218ENST00000470942 PRKAR2AP13861 404 aaKnown RBP18.54■□□□□ 0.56
HDAC6-218ENST00000470942 ADORA2AP29274 412 aa18.54■□□□□ 0.56
HDAC6-218ENST00000470942 RIOX2Q8IUF8 465 aa18.54■□□□□ 0.56
HDAC6-218ENST00000470942 TBC1D10CQ8IV04 446 aa18.54■□□□□ 0.56
HDAC6-218ENST00000470942 STAG1Q8WVM7 1258 aa18.54■□□□□ 0.56
HDAC6-218ENST00000470942 RUFY2Q8WXA3 655 aa18.54■□□□□ 0.56
HDAC6-218ENST00000470942 NBPF3Q9H094 633 aa18.54■□□□□ 0.56
HDAC6-218ENST00000470942 PAK6Q9NQU5 681 aaPredicted RBP18.54■□□□□ 0.56
HDAC6-218ENST00000470942 CTNNA3Q9UI47 895 aa18.54■□□□□ 0.56
HDAC6-218ENST00000470942 TMEM232C9JQI7 657 aa18.53■□□□□ 0.56
HDAC6-218ENST00000470942 MCCP23508 829 aa18.53■□□□□ 0.56
HDAC6-218ENST00000470942 SLC1A4P43007 532 aa18.53■□□□□ 0.56
HDAC6-218ENST00000470942 SLC4A3P48751 1232 aa18.53■□□□□ 0.56
HDAC6-218ENST00000470942 CACNB2Q08289 660 aaPredicted RBP18.53■□□□□ 0.56
HDAC6-218ENST00000470942 IKQ13123 557 aaPredicted RBP18.53■□□□□ 0.56
HDAC6-218ENST00000470942 REPS2Q8NFH8 660 aa18.53■□□□□ 0.56
HDAC6-218ENST00000470942 NPLOC4Q8TAT6 608 aa18.53■□□□□ 0.56
HDAC6-218ENST00000470942 ZNF236Q9UL36 1845 aa18.52■□□□□ 0.56
HDAC6-218ENST00000470942 HOXC6P09630 235 aa18.52■□□□□ 0.56
HDAC6-218ENST00000470942 FCER1AP12319 257 aa18.52■□□□□ 0.56
HDAC6-218ENST00000470942 CHMLP26374 656 aa18.52■□□□□ 0.56
HDAC6-218ENST00000470942 IMMTQ16891 758 aaKnown RBP18.52■□□□□ 0.56
HDAC6-218ENST00000470942 MFSD14CQ5VZR4 134 aa18.52■□□□□ 0.56
HDAC6-218ENST00000470942 SNRNP48Q6IEG0 339 aaKnown RBP18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms