RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 GOPCQ9HD26 462 aa25.26■■□□□ 1.63
COL9A3-207ENST00000467819 SMCHD1A6NHR9 2005 aa25.25■■□□□ 1.63
COL9A3-207ENST00000467819 ANO1Q5XXA6 986 aa25.25■■□□□ 1.63
COL9A3-207ENST00000467819 OSBP2Q969R2 916 aa25.25■■□□□ 1.63
COL9A3-207ENST00000467819 UBE2OQ9C0C9 1292 aaKnown RBP25.25■■□□□ 1.63
COL9A3-207ENST00000467819 SLC5A4Q9NY91 659 aa25.25■■□□□ 1.63
COL9A3-207ENST00000467819 GSG1L2A8MUP6 293 aa25.24■■□□□ 1.63
COL9A3-207ENST00000467819 MINDY4BA8MYZ0 360 aa25.24■■□□□ 1.63
COL9A3-207ENST00000467819 FCER1AP12319 257 aa25.24■■□□□ 1.63
COL9A3-207ENST00000467819 ATN1P54259 1190 aaPredicted RBP25.24■■□□□ 1.63
COL9A3-207ENST00000467819 FAM83BQ5T0W9 1011 aa25.24■■□□□ 1.63
COL9A3-207ENST00000467819 ABRAQ8N0Z2 381 aa25.24■■□□□ 1.63
COL9A3-207ENST00000467819 APPBP2Q92624 585 aa25.24■■□□□ 1.63
COL9A3-207ENST00000467819 GNL3Q9BVP2 549 aaKnown RBP eCLIP25.24■■□□□ 1.63
COL9A3-207ENST00000467819 DNM1LO00429 736 aa25.23■■□□□ 1.63
COL9A3-207ENST00000467819 SBK1Q52WX2 424 aa25.23■■□□□ 1.63
COL9A3-207ENST00000467819 GJC2Q5T442 439 aaPredicted RBP25.23■■□□□ 1.63
COL9A3-207ENST00000467819 TDHQ8IZJ6 230 aa25.23■■□□□ 1.63
COL9A3-207ENST00000467819 MKNK2Q9HBH9 465 aa25.23■■□□□ 1.63
COL9A3-207ENST00000467819 RNF113AO15541 343 aaKnown RBP25.22■■□□□ 1.63
COL9A3-207ENST00000467819 SLC25A27O95847 323 aa25.22■■□□□ 1.63
COL9A3-207ENST00000467819 RASA1P20936 1047 aa25.22■■□□□ 1.63
COL9A3-207ENST00000467819 MDM2Q00987 491 aaPredicted RBP25.22■■□□□ 1.63
COL9A3-207ENST00000467819 PRAMEF19Q5SWL8 479 aa25.22■■□□□ 1.63
COL9A3-207ENST00000467819 MAML3Q96JK9 1138 aa25.22■■□□□ 1.63
COL9A3-207ENST00000467819 PPP1R9AQ9ULJ8 1098 aa25.22■■□□□ 1.63
COL9A3-207ENST00000467819 ADAMTS5Q9UNA0 930 aa25.22■■□□□ 1.63
COL9A3-207ENST00000467819 ROBO3Q96MS0 1386 aa25.21■■□□□ 1.63
COL9A3-207ENST00000467819 GPAA1O43292 621 aa25.21■■□□□ 1.63
COL9A3-207ENST00000467819 MYCNP04198 464 aaPredicted RBP25.21■■□□□ 1.63
COL9A3-207ENST00000467819 GIMAP6Q6P9H5 292 aa25.21■■□□□ 1.63
COL9A3-207ENST00000467819 MMP19Q99542 508 aa25.21■■□□□ 1.63
COL9A3-207ENST00000467819 EPB41L4AQ9HCS5 686 aaPredicted RBP25.21■■□□□ 1.63
COL9A3-207ENST00000467819 M0R2C6 588 aa25.2■■□□□ 1.62
COL9A3-207ENST00000467819 VWA5AO00534 786 aa25.2■■□□□ 1.62
COL9A3-207ENST00000467819 SEPT4O43236 478 aa25.2■■□□□ 1.62
COL9A3-207ENST00000467819 TDO2P48775 406 aa25.2■■□□□ 1.62
COL9A3-207ENST00000467819 RIOX2Q8IUF8 465 aa25.2■■□□□ 1.62
COL9A3-207ENST00000467819 ARRDC4Q8NCT1 418 aa25.2■■□□□ 1.62
COL9A3-207ENST00000467819 NUP88Q99567 741 aaPredicted RBP25.2■■□□□ 1.62
COL9A3-207ENST00000467819 LTBP2Q14767 1821 aa25.2■■□□□ 1.62
COL9A3-207ENST00000467819 KBTBD13C9JR72 458 aa25.19■■□□□ 1.62
COL9A3-207ENST00000467819 PGK2P07205 417 aa25.19■■□□□ 1.62
COL9A3-207ENST00000467819 ZFYP08048 801 aaPredicted RBP25.19■■□□□ 1.62
COL9A3-207ENST00000467819 STAT3P40763 770 aa25.19■■□□□ 1.62
COL9A3-207ENST00000467819 APPP05067 770 aa25.18■■□□□ 1.62
COL9A3-207ENST00000467819 RTP1P59025 263 aa25.18■■□□□ 1.62
COL9A3-207ENST00000467819 LRIT3Q3SXY7 679 aa25.18■■□□□ 1.62
COL9A3-207ENST00000467819 ZNF214Q9UL59 606 aaPredicted RBP25.18■■□□□ 1.62
COL9A3-207ENST00000467819 COL6A3P12111 3177 aa25.17■■□□□ 1.62
COL9A3-207ENST00000467819 PRDM1O75626 825 aa25.17■■□□□ 1.62
COL9A3-207ENST00000467819 GNAT2P19087 354 aa25.17■■□□□ 1.62
COL9A3-207ENST00000467819 KCTD2Q14681 263 aa25.17■■□□□ 1.62
COL9A3-207ENST00000467819 REPS2Q8NFH8 660 aa25.17■■□□□ 1.62
COL9A3-207ENST00000467819 SLF1Q9BQI6 1058 aa25.17■■□□□ 1.62
COL9A3-207ENST00000467819 NYAP2Q9P242 653 aa25.17■■□□□ 1.62
COL9A3-207ENST00000467819 ATP11BQ9Y2G3 1177 aa25.17■■□□□ 1.62
COL9A3-207ENST00000467819 F5H6K3 240 aa25.16■■□□□ 1.62
COL9A3-207ENST00000467819 NDUFB10O96000 172 aa25.16■■□□□ 1.62
COL9A3-207ENST00000467819 KLRC3Q07444 240 aa25.16■■□□□ 1.62
COL9A3-207ENST00000467819 FAM47AQ5JRC9 791 aa25.16■■□□□ 1.62
COL9A3-207ENST00000467819 LBHD1Q9BQE6 289 aaPredicted RBP25.16■■□□□ 1.62
COL9A3-207ENST00000467819 CLIP2Q9UDT6 1046 aa25.16■■□□□ 1.62
COL9A3-207ENST00000467819 PCDHB15Q9Y5E8 787 aa25.16■■□□□ 1.62
COL9A3-207ENST00000467819 COPB2P35606 906 aa25.15■■□□□ 1.62
COL9A3-207ENST00000467819 LRRFIP1Q32MZ4 808 aaKnown RBP25.15■■□□□ 1.62
COL9A3-207ENST00000467819 ZNF444Q8N0Y2 327 aaPredicted RBP25.15■■□□□ 1.62
COL9A3-207ENST00000467819 PRKAG2Q9UGJ0 569 aa25.15■■□□□ 1.62
COL9A3-207ENST00000467819 TTC41PQ6P2S7 1318 aa25.14■■□□□ 1.62
COL9A3-207ENST00000467819 LRRC41Q15345 812 aa25.14■■□□□ 1.62
COL9A3-207ENST00000467819 ZNF792Q3KQV3 632 aa25.14■■□□□ 1.62
COL9A3-207ENST00000467819 SLC39A5Q6ZMH5 540 aa25.14■■□□□ 1.62
COL9A3-207ENST00000467819 Q7L0L9 218 aa25.14■■□□□ 1.62
COL9A3-207ENST00000467819 IFNL3Q8IZI9 196 aa25.14■■□□□ 1.62
COL9A3-207ENST00000467819 DEFB123Q8N688 67 aa25.14■■□□□ 1.62
COL9A3-207ENST00000467819 OTUD7AQ8TE49 926 aaPredicted RBP25.14■■□□□ 1.62
COL9A3-207ENST00000467819 SEC62Q99442 399 aaKnown RBP25.14■■□□□ 1.62
COL9A3-207ENST00000467819 TINF2Q9BSI4 451 aa25.14■■□□□ 1.62
COL9A3-207ENST00000467819 MCM3APO60318 1980 aa25.14■■□□□ 1.61
COL9A3-207ENST00000467819 IGKV6D-41A0A0C4DH26 115 aa25.13■■□□□ 1.61
COL9A3-207ENST00000467819 PATL2C9JE40 543 aaKnown RBP25.13■■□□□ 1.61
COL9A3-207ENST00000467819 ERC2O15083 957 aa25.13■■□□□ 1.61
COL9A3-207ENST00000467819 ADCYAP1R1P41586 468 aa25.13■■□□□ 1.61
COL9A3-207ENST00000467819 SLC4A3P48751 1232 aa25.13■■□□□ 1.61
COL9A3-207ENST00000467819 SNRNP48Q6IEG0 339 aaKnown RBP25.13■■□□□ 1.61
COL9A3-207ENST00000467819 GPR153Q6NV75 609 aa25.13■■□□□ 1.61
COL9A3-207ENST00000467819 PI4K2BQ8TCG2 481 aa25.13■■□□□ 1.61
COL9A3-207ENST00000467819 FERMT2Q96AC1 680 aa25.13■■□□□ 1.61
COL9A3-207ENST00000467819 CEP95Q96GE4 821 aa25.13■■□□□ 1.61
COL9A3-207ENST00000467819 FSD1Q9BTV5 496 aa25.13■■□□□ 1.61
COL9A3-207ENST00000467819 TEX13BQ9BXU2 312 aa25.13■■□□□ 1.61
COL9A3-207ENST00000467819 ZNF287Q9HBT7 754 aa25.13■■□□□ 1.61
COL9A3-207ENST00000467819 TAL1P17542 331 aaPredicted RBP25.12■■□□□ 1.61
COL9A3-207ENST00000467819 LRRC47Q8N1G4 583 aaKnown RBP25.12■■□□□ 1.61
COL9A3-207ENST00000467819 XPNPEP3Q9NQH7 507 aa25.12■■□□□ 1.61
COL9A3-207ENST00000467819 NRBP1Q9UHY1 535 aa25.12■■□□□ 1.61
COL9A3-207ENST00000467819 DIS3Q9Y2L1 958 aaKnown RBP25.12■■□□□ 1.61
COL9A3-207ENST00000467819 RARBP10826 455 aa25.11■■□□□ 1.61
COL9A3-207ENST00000467819 TRIM60Q495X7 471 aa25.11■■□□□ 1.61
COL9A3-207ENST00000467819 CPXCR1Q8N123 301 aa25.11■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms